Contig 007148:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024N13Sequence450012056 (2)ref|XP_006343610.1|4e-66PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like isoform X1 [Solanum tuber778007148 (2)gb|KDO51195.1|1e-48hypothetical protein CISIN_1g0096412mg, partial [Citrus sinensis]
JMSF030B05Sequence592012056 (2)ref|XP_004134588.1|4e-51PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cucumis sativus] ref|XP_792007148 (2)ref|XP_009381565.1|3e-32PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Musa acuminata subsp. malacce

Alignment

This contig is upended


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rJMFF024N13+                                                   TTCCGGGATGGGGAAGTTC
                      ____________________________________________________________
consensus                                                      TTCCGGGATGGGGAAGTTC
 
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rJMFF024N13+          AAGTACTTATTTCCTCTGATGCTATGACACGTGGAATGGATGTCGAAGGGGTGAGAAATG
rJMSF030B05+                                                          GGGTGAGAAATG
                      ____________________________________________________________
consensus             AAGTACTTATTTCCTCTGATGCTATGACACGTGGAATGGATGTCGAAGGGGTGAGAAATG
 
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rJMFF024N13+          TCATTAATTATGATATGCCTGCATATATTAAGACCTATATACATCGAGCTGGTCGAACTG
rJMSF030B05+          TCATTNATTATGATATGCCTGCATATATTAAGACCTATATACATCGAGCTGGTCGAACTG
                      ____________________________________________________________
consensus             TCATTAATTATGATATGCCTGCATATATTAAGACCTATATACATCGAGCTGGTCGAACTG
 
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rJMFF024N13+          CAAGAGCTGGTCAAACTGGTTATTGCTTCACATTGTTGCGTAAGGATGAGGTCAAGAAAT
rJMSF030B05+          CAAGAGCTGGTCAAACTGGTTATTGCTTCACATTGGTGCGTAAGGATGAGGTCAAGAAAT
                      ____________________________________________________________
consensus             CAAGAGCTGGTCAAACTGGTTATTGCTTCACATTGTTGCGTAAGGATGAGGTCAAGAAAT
 
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rJMFF024N13+          TTAAGAAAATGTTACAAAAAGTTGACAACAACTCTTGTACAGCTCATCCTATTGAATCAC
rJMSF030B05+          TTAAGAAAATGTTACAAAAAGTTGACAACAACTCTTGTACAGCTCATCCTATTGAATCAC
                      ____________________________________________________________
consensus             TTAAGAAAATGTTACAAAAAGTTGACAACAACTCTTGTACAGCTCATCCTATTGAATCAC
 
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rJMFF024N13+          AAGCAGTAGAGTCGCTTCGCCCCATCTATACGTCAGCATTGGAGAAATTGAAAGAGAGTG
rJMSF030B05+          AAGCAGTAGAGTCGCTTCGCCCCATCTATACGTCAGCATTGGAGAAATTGAAAGAGAGTG
                      ____________________________________________________________
consensus             AAGCAGTAGAGTCGCTTCGCCCCATCTATACGTCAGCATTGGAGAAATTGAAAGAGAGTG
 
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rJMFF024N13+          TTGAATCAGAAAAATTTAAGAAACGACGTACTAGTCTGAAGCCTTCTAATGCAAGTAAAC
rJMSF030B05+          TTGAATCAGAAAAATTTAAGAAACGACGTACTAGTCTGAAGCCTTCTAATGCAAGTAAAC
                      ____________________________________________________________
consensus             TTGAATCAGAAAAATTTAAGAAACGACGTACTAGTCTGAAGCCTTCTAATGCAAGTAAAC
 
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rJMFF024N13+          GCAAGAGAGAAGAGCGTTTAGAGTAGTTCCAACTTCCTTTTCAAGTAGAGCTCGTTCTGG
rJMSF030B05+          GCAAGAGAGAAGAGCGTTTAGAGTAGTTCCAACTTCCTTTTCAAGTAGAGCTCGTTCTGG
                      ____________________________________________________________
consensus             GCAAGAGAGAAGAGCGTTTAGAGTAGTTCCAACTTCCTTTTCAAGTAGAGCTCGTTCTGG
 
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rJMFF024N13+          GTGGATCATTTCTACTCCATTTTGAAAACGCCAAGTCATTTGAGTTCTTTTGAGGATCAA
rJMSF030B05+          GTGGATCATTTCTACTCCATTTTGAAAACGCCAAGTCATTTGAGTTCTTTTGAGGATCAA
                      ____________________________________________________________
consensus             GTGGATCATTTCTACTCCATTTTGAAAACGCCAAGTCATTTGAGTTCTTTTGAGGATCAA
 
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rJMFF024N13+          CCTTTGAAAGTGGTGAGTGGTAACAGGGAGAGCTTCATTTTGTCTTCCAAGGAAAGCGGA
rJMSF030B05+          CCTTTGAAAGTGGTGAGTGGTAACAGGGAGAGCTTCATTTTGTCTTCCAAGGAAAGCGGA
                      ____________________________________________________________
consensus             CCTTTGAAAGTGGTGAGTGGTAACAGGGAGAGCTTCATTTTGTCTTCCAAGGAAAGCGGA
 
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rJMFF024N13+          TTATATATTATGTGTCTCTTATTATGCATAATTTCATTTAATTGTGAATACCTATTTGAA
rJMSF030B05+          TTATATATTATGTGTCTCTTATTATGCATAATTTCATTTAATTGTGAATACCTATTTGAA
                      ____________________________________________________________
consensus             TTATATATTATGTGTCTCTTATTATGCATAATTTCATTTAATTGTGAATACCTATTTGAA
 
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rJMFF024N13+          TTATACATCTTCATATGTTACTCTTCCATATTCATAACTTACTCCCCATAGCCATTTGGT
rJMSF030B05+          TTATACATCTTCATATGTTACTCTTCCATATTCATAACTTACTCCCCATAGCCATTTGGT
                      ____________________________________________________________
consensus             TTATACATCTTCATATGTTACTCTTCCATATTCATAACTTACTCCCCATAGCCATTTGGT
 
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rJMFF024N13+          TTTCTCTTTTTCCGCTTATTCTTGCGAGGCTATAGATAGAGGTCTAGTTGTAGGTGAAGA
rJMSF030B05+          TTTCTCTTTTTCCGCTTATTCTTGCGAGGCTATAGATAGAGGTCTAGTTGTAGGTGAAGA
                      ____________________________________________________________
consensus             TTTCTCTTTTTCCGCTTATTCTTGCGAGGCTATAGATAGAGGTCTAGTTGTAGGTGAAGA
 
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rJMFF024N13+          TTGAATACAATCATCTCTCTTCTCTAAAGTTGCTCAATT                     
rJMSF030B05+          TTGAATACAATCATCTCTCTTCTCTAAAGTTGCTCAATTACTTTTATAATAGCTCGAGCT
                      ____________________________________________________________
consensus             TTGAATACAATCATCTCTCTTCTCTAAAGTTGCTCAATTACTTTTATAATAGCTCGAGCT
 
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rJMSF030B05+          TTGATACCGAGATTTTCTTATTTTCTTCGAGGTGTTATAAATAATGGGATATGATATCTG
                      ____________________________________________________________
consensus             TTGATACCGAGATTTTCTTATTTTCTTCGAGGTGTTATAAATAATGGGATATGATATCTG