Contig 007146:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020K04Sequence679007869 (3)341007146 (4)
JMSF020L09Sequence675007869 (3)368007146 (4)
JMSF029L15Sequence612014692624007146 (4)
JMSF044B06Sequence750014745325007146 (4)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF020L09+ CCGNAAANTNTGNTNCCCANTTTGTNNGNCCCCCNGCCTNAT
                      ____________________________________________________________
consensus CCGNAAANTNTGNTNCCCANTTTGTNNGNCCCCCNGCCTNAT
 
. : . : . : . : . : . :
rJMSF020L09+ CCCAAAAAAATNTCCANNCNATTTTCNAAAAAAAAAAAACAAACAAACAAATGTGCAGGT
rJMSF020K04+ AAAAAAAAAAAACAAACAAACAAATGTGCAGGT
                      ____________________________________________________________
consensus CCCAAAAAAATNTCCANNCNATTTTCNAAAAAAAAAAAACAAACAAACAAATGTGCAGGT
 
. : . : . : . : . : . :
rJMSF020L09+ GTTCTCACCGTAATCTTCAAGCAACTGTGTTTTATCAATACTGAGATGGCAGTGGCAGGT
rJMSF020K04+ GTTCTCACCGTAATCTTCAAGCAACTGTGTTTTATCAATACTGAGATGGCAGTGGCAGGT
                      ____________________________________________________________
consensus GTTCTCACCGTAATCTTCAAGCAACTGTGTTTTATCAATACTGAGATGGCAGTGGCAGGT
 
. : . : . : . : . : . :
rJMSF020L09+ GGCAGGTGGCAGGTGTTCTCACCGTAATCGCAACTGTGTTTAATCAATATTGAGATGACA
rJMSF020K04+ GGCAGGTGGCAGGTGTTCTCACCGTAATCGCAACTGTGTTTAATCAATATTGAGATGACA
rJMSF044B06+ CTGTGTTTTATCAATACTGAGATGACA
rJMSF029L15+ CTGTGTTTTATCAATACTGAGATGACA
                      ____________________________________________________________
consensus GGCAGGTGGCAGGTGTTCTCACCGTAATCGCAACTGTGTTTTATCAATATTGAGATGACA
 
. : . : . : . : . : . :
rJMSF020L09+ TAGTATCTTTGCCCAGATATTTGGTTATTTGTTTGCGTATTTGCAAGTGGTTCGAACTGG
rJMSF020K04+ TAGTATCTTTGCCCAGATATTTGGTTATTTGTTTGCGTATTTGCAAGTGGTTCGAACTGG
rJMSF044B06+ TAGTATCTTTGTCCAGATTTTTGGTTCTTTGTTTGCATACTTGCAGGTAGTTTGAACTGG
rJMSF029L15+ TAGTATCTTTGTCCAGATTTTTGGTTCTTTGTTTGCATACTTGCAGGTAGTTTGAACTGG
                      ____________________________________________________________
consensus TAGTATCTTTGTCCAGATTTTTGGTTCTTTGTTTGCGTATTTGCAGGTGGTTTGAACTGG
 
. : . : . : . : . : . :
rJMSF020L09+ AGAGATGGTTTACTTGTGAGTGAATATTGATATCAAGGGAGCTTTATATAGAGGCTGAGA
rJMSF020K04+ AGAGATGGTTTACTTGTGAGTGAATATTGATATCAAGGGAGCTTTATATAGAGGCTGAGA
rJMSF044B06+ AGAGATGGTGAACTTGTGAGTGATTATTGATATCAA----GCTTTATATAGAGACTGAAA
rJMSF029L15+ AGAGATGGTGAACTTGTGAGTGATTATTGATATCAA----GCTTTATATAGAGACTGAAA
                      ____________________________________________________________
consensus AGAGATGGTTTACTTGTGAGTGATTATTGATATCAAGGGAGCTTTATATAGAGGCTGAGA
 
. : . : . : . : . : . :
rJMSF020L09+ TTTGTTTTTCAATTTTGAATATTGTC
rJMSF020K04+ TTTGTTTTTCAATTTTGAATATTGTCCTGGAAC
rJMSF044B06+ TTTGTTTTTCAATTTTGAATATTGTCTTGGAACTATGAAGGCTGC
rJMSF029L15+ TTTGTTTTTCAATTTTGAATATTGTCTTGGAACTATGAAGGCTGCTGGAAACGTTTCAAG
                      ____________________________________________________________
consensus TTTGTTTTTCAATTTTGAATATTGTCTTGGAACTATGAAGGCTGCTGGAAACGTTTCAAG
 
. : . : . : . : . : . :
rJMSF029L15+ ACCCAAGATTACATTCAATAGATAATTTTTTCGAAGCATTTTCTCGTATAGAGATGTGTA
                      ____________________________________________________________
consensus ACCCAAGATTACATTCAATAGATAATTTTTTCGAAGCATTTTCTCGTATAGAGATGTGTA
 
. : . : . : . : . : . :
rJMSF029L15+ ACAGCCTTATGTGTATATTTGTATCTTTATATATGTAAATAAATGGCCCGCATGGGTAGC
                      ____________________________________________________________
consensus ACAGCCTTATGTGTATATTTGTATCTTTATATATGTAAATAAATGGCCCGCATGGGTAGC
 
. : . : . : . : . : . :
rJMSF029L15+ TCAACTGGTCATAGAGGTTAAACTTTGGAAGAATGACCAGGGATCGAGTCTCACCAGCGG
                      ____________________________________________________________
consensus TCAACTGGTCATAGAGGTTAAACTTTGGAAGAATGACCAGGGATCGAGTCTCACCAGCGG
 
. : . : . : . : . : . :
rJMSF029L15+ CAGTGTGGGAGCAACCTCTCAAAGTGAGGGGGGCTCCTTGTGCGCAGTGGGCACCGGTCT
                      ____________________________________________________________
consensus CAGTGTGGGAGCAACCTCTCAAAGTGAGGGGGGCTCCTTGTGCGCAGTGGGCACCGGTCT
 
. : . : . : . : . : . :
rJMSF029L15+ AGCCTCTGTGATTAATGTTTTGAGTCACCATGCCCTTAGGGTTGAGGTTCAGCCTTTGGA
                      ____________________________________________________________
consensus AGCCTCTGTGATTAATGTTTTGAGTCACCATGCCCTTAGGGTTGAGGTTCAGCCTTTGGA