Contig 007146:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF020L09+                            CCGNAAANTNTGNTNCCCANTTTGTNNGNCCCCCNGCCTNAT
                      ____________________________________________________________
consensus                               CCGNAAANTNTGNTNCCCANTTTGTNNGNCCCCCNGCCTNAT
 
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rJMSF020L09+          CCCAAAAAAATNTCCANNCNATTTTCNAAAAAAAAAAAACAAACAAACAAATGTGCAGGT
rJMSF020K04+                                     AAAAAAAAAAAACAAACAAACAAATGTGCAGGT
                      ____________________________________________________________
consensus             CCCAAAAAAATNTCCANNCNATTTTCNAAAAAAAAAAAACAAACAAACAAATGTGCAGGT
 
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rJMSF020L09+          GTTCTCACCGTAATCTTCAAGCAACTGTGTTTTATCAATACTGAGATGGCAGTGGCAGGT
rJMSF020K04+          GTTCTCACCGTAATCTTCAAGCAACTGTGTTTTATCAATACTGAGATGGCAGTGGCAGGT
                      ____________________________________________________________
consensus             GTTCTCACCGTAATCTTCAAGCAACTGTGTTTTATCAATACTGAGATGGCAGTGGCAGGT
 
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rJMSF020L09+          GGCAGGTGGCAGGTGTTCTCACCGTAATCGCAACTGTGTTTAATCAATATTGAGATGACA
rJMSF020K04+          GGCAGGTGGCAGGTGTTCTCACCGTAATCGCAACTGTGTTTAATCAATATTGAGATGACA
rJMSF044B06+                                           CTGTGTTTTATCAATACTGAGATGACA
rJMSF029L15+                                           CTGTGTTTTATCAATACTGAGATGACA
                      ____________________________________________________________
consensus             GGCAGGTGGCAGGTGTTCTCACCGTAATCGCAACTGTGTTTTATCAATATTGAGATGACA
 
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rJMSF020L09+          TAGTATCTTTGCCCAGATATTTGGTTATTTGTTTGCGTATTTGCAAGTGGTTCGAACTGG
rJMSF020K04+          TAGTATCTTTGCCCAGATATTTGGTTATTTGTTTGCGTATTTGCAAGTGGTTCGAACTGG
rJMSF044B06+          TAGTATCTTTGTCCAGATTTTTGGTTCTTTGTTTGCATACTTGCAGGTAGTTTGAACTGG
rJMSF029L15+          TAGTATCTTTGTCCAGATTTTTGGTTCTTTGTTTGCATACTTGCAGGTAGTTTGAACTGG
                      ____________________________________________________________
consensus             TAGTATCTTTGTCCAGATTTTTGGTTCTTTGTTTGCGTATTTGCAGGTGGTTTGAACTGG
 
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rJMSF020L09+          AGAGATGGTTTACTTGTGAGTGAATATTGATATCAAGGGAGCTTTATATAGAGGCTGAGA
rJMSF020K04+          AGAGATGGTTTACTTGTGAGTGAATATTGATATCAAGGGAGCTTTATATAGAGGCTGAGA
rJMSF044B06+          AGAGATGGTGAACTTGTGAGTGATTATTGATATCAA----GCTTTATATAGAGACTGAAA
rJMSF029L15+          AGAGATGGTGAACTTGTGAGTGATTATTGATATCAA----GCTTTATATAGAGACTGAAA
                      ____________________________________________________________
consensus             AGAGATGGTTTACTTGTGAGTGATTATTGATATCAAGGGAGCTTTATATAGAGGCTGAGA
 
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rJMSF020L09+          TTTGTTTTTCAATTTTGAATATTGTC                                  
rJMSF020K04+          TTTGTTTTTCAATTTTGAATATTGTCCTGGAAC                           
rJMSF044B06+          TTTGTTTTTCAATTTTGAATATTGTCTTGGAACTATGAAGGCTGC               
rJMSF029L15+          TTTGTTTTTCAATTTTGAATATTGTCTTGGAACTATGAAGGCTGCTGGAAACGTTTCAAG
                      ____________________________________________________________
consensus             TTTGTTTTTCAATTTTGAATATTGTCTTGGAACTATGAAGGCTGCTGGAAACGTTTCAAG
 
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rJMSF029L15+          ACCCAAGATTACATTCAATAGATAATTTTTTCGAAGCATTTTCTCGTATAGAGATGTGTA
                      ____________________________________________________________
consensus             ACCCAAGATTACATTCAATAGATAATTTTTTCGAAGCATTTTCTCGTATAGAGATGTGTA
 
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rJMSF029L15+          ACAGCCTTATGTGTATATTTGTATCTTTATATATGTAAATAAATGGCCCGCATGGGTAGC
                      ____________________________________________________________
consensus             ACAGCCTTATGTGTATATTTGTATCTTTATATATGTAAATAAATGGCCCGCATGGGTAGC
 
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rJMSF029L15+          TCAACTGGTCATAGAGGTTAAACTTTGGAAGAATGACCAGGGATCGAGTCTCACCAGCGG
                      ____________________________________________________________
consensus             TCAACTGGTCATAGAGGTTAAACTTTGGAAGAATGACCAGGGATCGAGTCTCACCAGCGG
 
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rJMSF029L15+          CAGTGTGGGAGCAACCTCTCAAAGTGAGGGGGGCTCCTTGTGCGCAGTGGGCACCGGTCT
                      ____________________________________________________________
consensus             CAGTGTGGGAGCAACCTCTCAAAGTGAGGGGGGCTCCTTGTGCGCAGTGGGCACCGGTCT
 
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rJMSF029L15+          AGCCTCTGTGATTAATGTTTTGAGTCACCATGCCCTTAGGGTTGAGGTTCAGCCTTTGGA
                      ____________________________________________________________
consensus             AGCCTCTGTGATTAATGTTTTGAGTCACCATGCCCTTAGGGTTGAGGTTCAGCCTTTGGA