| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009C05 | Sequence | 775 | 007144 (7) | ref|XP_009769543.1| | 7e-61 | PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana sylvestris] | |||||
| JMFS150D10 | Sequence | 611 | 007144 (7) | ref|XP_009769543.1| | 1e-61 | PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana sylvestris] | |||||
| JMSF014N21 | Sequence | 741 | 007144 (7) | ref|NP_001233765.1| | 3e-49 | auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au | |||||
| JMSF020M19 | Sequence | 714 | 007144 (7) | ref|XP_010318417.1| | 3e-29 | PREDICTED: auxin response factor 2 isoform X2 [Solanum lycopersicum] | |||||
| JMSF029A17 | Sequence | 693 | 007144 (7) | ref|NP_001233765.1| | 2e-47 | auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au | |||||
| JMSF033L05 | Sequence | 119 | 009437 (21) | 739 | 007144 (7) | ref|XP_009769543.1| | 9e-44 | PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana sylvestris] | |||
| JMSF052D15 | Sequence | 191 | 007144 (7) | ref|XP_011073189.1| | 2e-13 | PREDICTED: auxin response factor 2-like [Sesamum indicum] | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF052D15+ TAAAGTGGTAGACGATGGGGGT
____________________________________________________________
consensus TAAAGTGGTAGACGATGGGGGT
. : . : . : . : . : . :
rJMSF052D15+ AACTGGCAATGAGGAGGAAAAAATATTTCATATTCAACCTGCTGATAAAGATAGGGAGAG
____________________________________________________________
consensus AACTGGCAATGAGGAGGAAAAAATATTTCATATTCAACCTGCTGATAAAGATAGGGAGAG
. : . : . : . : . : . :
rJMSF052D15+ AAAAAGTTCATAGTGGCTCAACAAGGAGTTGCACCAAGGTTCATAAGCAGGGCACTGCAC
JMFS150D10- CCAAGGTTCATAAGCAGGGCACTGCAC
rJMFF009C05+ CCAAGGTTCATAAGCAGGGCACTGCAC
____________________________________________________________
consensus AAAAAGTTCATAGTGGCTCAACAAGGAGTTGCACCAAGGTTCATAAGCAGGGCACTGCAC
. : . : . : . : . : . :
rJMSF052D15+ TTGGTAGGTCTGTGGATCTTACCAAGTTCAACAATTATGATGAATTG
JMFS150D10- TTGGTAGGTCTGTGGATCTTACCAAGTTCAACAATTATGATGAATTGCTTGCTGAACTGG
rJMFF009C05+ TTGGTAGGTCTGTGGATCTTACCAAGTTCAACAATTATGATGAATTGCTTGCTGAACTGG
rJMSF014N21+ TCAACAATTATGATGAATTGCTTGCTGAACTGG
rJMSF033L05+ TGCTTGCTGAACTGG
rJMSF020M19+ TGG
rJMSF029A17+ TCAACAATTATGATGAANTGCTTGCTGAACTGG
____________________________________________________________
consensus TTGGTAGGTCTGTGGATCTTACCAAGTTCAACAATTATGATGAATTGCTTGCTGAACTGG
. : . : . : . : . : . :
JMFS150D10- ACAAGCTGTTTGATTTTAATGGTGAACTTAAGGCAATGAATAAGAATTGGATGGTTGTAT
rJMFF009C05+ ACAAGCTGTTTGATTTTAATGGTGAACTTAAGGCAATGAATAAGAATTGGATGGTTGTAT
rJMSF014N21+ ACAAGCTGTTTGATTTTAATGGTGAACTTAAGGCAATGAATAAGAATTGGATGGTTGTAT
rJMSF033L05+ ACAAGCTGTTTGATTTTAATGGTGAACTTAAGGCAATGAATAAGAATTGGATGGTTGTAT
rJMSF020M19+ ACAAGCTGTTTGATTTTAATGGTGAACTTNAGGCAATGAATAAGAATTGGATGGTTGTAT
rJMSF029A17+ ACAAGCTGTTTGATTTTAATGGTGAACTTAAGGCAATGAATAAGAATTGGATGGTGGTAT
____________________________________________________________
consensus ACAAGCTGTTTGATTTTAATGGTGAACTTAAGGCAATGAATAAGAATTGGATGGTTGTAT
. : . : . : . : . : . :
JMFS150D10- ACACTGATGATGAGGGTGATATGATGCTCGTGGGGGATGATCCATGGCAAGAATTCTGCG
rJMFF009C05+ ACACTGATGATGAGGGTGATATGATGCTCGTGGGGGATGATCCATGGCAAGAATTCTGCG
rJMSF014N21+ ACACTGATGATGAGGGTGATATGATGCTCGTGGGGGATGATCCATGGCAAGAATTCTGCG
rJMSF033L05+ ACACTGATGATGAGGGTGATATGATGCTCGTGGGGGATGATCCATGGCAAGAATTCTGCG
rJMSF020M19+ ACACTGATGATGAGGGNGATATGATGCTCGNGGGGGATGATCCATGGCAAGAATTCTGCG
rJMSF029A17+ ACACTGATGATGAGGGTGATATGATGCTCGTGGGGGATGATCCATGGCAAGAATTCTGCG
____________________________________________________________
consensus ACACTGATGATGAGGGTGATATGATGCTCGTGGGGGATGATCCATGGCAAGAATTCTGCG
. : . : . : . : . : . :
JMFS150D10- GAATGGTTCGCAAAATCTACATCTACACGAAGGAAGAGGTACAACGGATGAACCCAGGGA
rJMFF009C05+ GAATGGTTCGCAAAATCTACATCTACACGAAGGAAGAGGTACAACGGATGAACCCAGGGA
rJMSF014N21+ GAATGGTTCGCAAAATCTACATCTACACGAAGGAAGAGGTACAACGGATGAACCCAGGGA
rJMSF033L05+ GAATGGTTCGCAAAATCTACATCTACACGAAGGAAGAGGTACAACGGATGAACCCAGGGA
rJMSF020M19+ GAATGGTTCGCAAAATCTACATCTACACGAAGGAAGAGGTACAACGGATGAACCCATGGA
rJMSF029A17+ GAATGGTTCGCAAAATCTACATCTACACGAAGGAAGAGGTACAACGGATGAACCCAGGGA
____________________________________________________________
consensus GAATGGTTCGCAAAATCTACATCTACACGAAGGAAGAGGTACAACGGATGAACCCAGGGA
. : . : . : . : . : . :
JMFS150D10- CTCTGAATTCAAAAGACGAGGATACATCATCAGTTGCAGAAGGATTGGACACTGGAGAAG
rJMFF009C05+ CTCTGAATTCAAAAGACGAGGATACATCATCAGTTGCAGAAGGATTGGACACTGGAGAAG
rJMSF014N21+ CTCTGAATTCAAAAGACGAGGATACATCATCAGTTGCAGAAGGATTGGACACTGGAGAAG
rJMSF033L05+ CTCTGAATTCAAAAGACGAGGATACATCATCAGTTGCAGAAGGATTGGACACTGGAGAAG
rJMSF020M19+ CTCTGAATTCAAAAGACGAGGATACATCATCAGTTGCAGAAGGATTGGACACTGGAGAAG
rJMSF029A17+ CTCTGAATTCAAAAGACGAGGATACATCATCAGTTGCAGAAGGATTGGACACTGGAGAAG
____________________________________________________________
consensus CTCTGAATTCAAAAGACGAGGATACATCATCAGTTGCAGAAGGATTGGACACTGGAGAAG
. : . : . : . : . : . :
JMFS150D10- TGAAGAAGATTTCACAGATTCCTTCAGCATCCAGTGCTGAGGAATGTTAACTTTTCCTTG
rJMFF009C05+ TGAAGAAGATTTCACAGATTCCTTCAGCATCCAGTGCTGAGGAATGTTAACTTTTCCTTG
rJMSF014N21+ TGAAGAAGATTTCACAGATTCCTTCAGCATCCAGTGCTGAGGAATGTTAACTTTTCCTTG
rJMSF033L05+ TGAAGAAGATTTCACAGATTCCTTCAGCATCCAGTGCTGAGGAATGTTAACTTTTCCTTG
rJMSF020M19+ TGAAGAAGATTTCACAGATTCCTTCAGCATCCAGTGCTGAGGAATGTTAACTTTTCCTTG
rJMSF029A17+ TGAAGAAGATTTCACAGATTCCTTCAGCATCCAGTGCTGAGGAATGTTAACTTTTCCTTG
____________________________________________________________
consensus TGAAGAAGATTTCACAGATTCCTTCAGCATCCAGTGCTGAGGAATGTTAACTTTTCCTTG
. : . : . : . : . : . :
JMFS150D10- AAGCTATATATATTTATAGCCAAATTATAGGTTATTTGAAGCAGGGAGAAGACCATTGTC
rJMFF009C05+ AAGCTATATATATTTATAGCCAAATTATAGGTTATTTGAAGCAGGGAGAAGACCATTGTC
rJMSF014N21+ AAGCTATATATATTTATAGCCAAATTATAGGTTATTTGAAGCAGGGAGAAGACCATTGTC
rJMSF033L05+ AAGCTATATATATTTATAGCCAAATTATAGGTTATTTGAAGCAGGGAGAAGACCATTGTC
rJMSF020M19+ AAGCTATATATATTTATAGCCAAATTATAGGTTATTTGAAGCAGGGAGAAGACCATTGTC
rJMSF029A17+ AAGCTATATATATTTATAGCCAAATTATAGGTTATTTGAAGCAGGGAGAAGACCATTGTC
____________________________________________________________
consensus AAGCTATATATATTTATAGCCAAATTATAGGTTATTTGAAGCAGGGAGAAGACCATTGTC
. : . : . : . : . : . :
JMFS150D10- CATACAGCTGTTGATTTTTTTTGGGATACTTGAATGTCGTAAGATGCATATGAGAGGTCC
rJMFF009C05+ CATACAGCTGTTGATTTTTTTTGGGATACTTGAATGTCGTAAGATGCATATGAGAGGTCC
rJMSF014N21+ CATACAGCTGTTGATTTTTTTTGGGATACTTGAATGTCGTAAGATGCATATGAGAGGTCC
rJMSF033L05+ CATACAGCTGTTGATTTTTTTTGGGATACTTGAATGTCGTAAGATGCATATGAGAGGTCC
rJMSF020M19+ CATACAGCTGTTGATTTTTTTTGGGATACTTGAATGTCGTAAGATGCATATGAGAGGTCC
rJMSF029A17+ CATACAGCTGTTGATTTTTTTTGGGATACTTGAATGTCGTAAGATGCATATGAGAGGTCC
____________________________________________________________
consensus CATACAGCTGTTGATTTTTTTTGGGATACTTGAATGTCGTAAGATGCATATGAGAGGTCC
. : . : . : . : . : . :
JMFS150D10- CTTTTAACTTCAGGTGGCAGGGGGTCTCTCTC-ATATATAGCACAGAACAGCACGTATTC
rJMFF009C05+ CTTTTAACTTCAGGTGGCAGGGGGTCTCTCTCAATATATAGCACAGAACAGCACGTATTC
rJMSF014N21+ CTTTTAACTTCAGGTGGCAGGGGGTCTCTCTCAATATATAGCACAGAACAGCACGTATTC
rJMSF033L05+ CTTTTAACTTCAGGTGGCAGGGGGTCTCTCTCAATATATAGCACAGAACAGCACGTATTC
rJMSF020M19+ CTTTTAACTTCNGGTGGCNGGGGGTCTCTCTCAATATATAGCACAGAACAGCACGTATTC
rJMSF029A17+ CTTTTAACTTCAGGTGGCAGGGGGTCTCTCTCAATATATAGCACAGAACAGCACGTATTC
____________________________________________________________
consensus CTTTTAACTTCAGGTGGCAGGGGGTCTCTCTCAATATATAGCACAGAACAGCACGTATTC
. : . : . : . : . : . :
JMFS150D10- TATAACTT
rJMFF009C05+ TATAACTTGCAATTTTGGACCCCTTTCTTGGAGCCGACATATGGTGCACTATTTATATAC
rJMSF014N21+ TATAACTTGCAATTTTGGACCCCTTTCTTGGAGCCGACATATGGTGCACTATTTATATAC
rJMSF033L05+ TATAACTTGCAATTTTGGACCCCTTTCTTGGAGCCGACATATGGTGCACTATTTATATAC
rJMSF020M19+ TATAACTNGCAATTTTGGACCCCTTTCTTGGAGCCGACATATGGTGCACTATTTATATAC
rJMSF029A17+ TATAACTTGCAATTTTGGACCCCTTTCTTGGAGCCGACATATGGTGCACTATTTATATAC
____________________________________________________________
consensus TATAACTTGCAATTTTGGACCCCTTTCTTGGAGCCGACATATGGTGCACTATTTATATAC
. : . : . : . : . : . :
rJMFF009C05+ ATAGTATATGCACATATCTATATATATATTATCCACTAGGCATAACCTTGCTTGAAATTT
rJMSF014N21+ ATAGTATATGCACATATCTATATATATATTATCCACTAGGCATAACCTTGCTTGAAATTT
rJMSF033L05+ ATAGTATATGCACATATCTATATATATATTATCCACTAGGCATAACCTTGCTTGAAATTT
rJMSF020M19+ ATAGTATATGCACATATCTATATATATATTATCCACTAGGCATAACCTTGCTTGAAATTT
rJMSF029A17+ ATAGTATATGCACATATCTATATATATATTATCCACTAGGCATAACCTTGCTTGAAATTT
____________________________________________________________
consensus ATAGTATATGCACATATCTATATATATATTATCCACTAGGCATAACCTTGCTTGAAATTT
. : . : . : . : . : . :
rJMFF009C05+ CCACTTTGTACATAGATGAAATGCGCCTGTTCTTTCAG
rJMSF014N21+ CCACTTTGTACATAGATGAAATGCGCCTGTTCTTTCAG
rJMSF033L05+ CCACTTTGTACATAGATGAAATGCGCCTGTTCTTTCAG
rJMSF020M19+ CCACTTTGTACATAGATGAAATGCGCCTGTTCTTTCAG
rJMSF029A17+ CCACTTTGTACATAGATGAAATGCGCCTGTTCTTTCAGCTTGAATGTAGGCAAGTAGTAG
____________________________________________________________
consensus CCACTTTGTACATAGATGAAATGCGCCTGTTCTTTCAGCTTGAATGTAGGCAAGTAGTAG