Contig 007143:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027M07Sequence687007143 (3)ref|XP_006474018.1|1e-109PREDICTED: F-box protein SKIP1-like [Citrus sinensis]701007143 (3)ref|XP_003610294.1|3e-97F-box protein SKIP1 [Medicago truncatula] gb|AES92491.1| F-box SKIP1-like protei
JMSF028M07Sequence695007143 (3)ref|XP_003610294.1|1e-95F-box protein SKIP1 [Medicago truncatula] gb|AES92491.1| F-box SKIP1-like protei

Alignment

This contig is upended


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JMSF027M07-                                                                 TGAAGA
                      ____________________________________________________________
consensus                                                                   TGAAGA
 
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JMSF027M07-           AAATGAACGAGCTAGAAGATGGAAGCGAGTCTGGACTCGGCAGTTACTGGGCCGAGTTGA
                      ____________________________________________________________
consensus             AAATGAACGAGCTAGAAGATGGAAGCGAGTCTGGACTCGGCAGTTACTGGGCCGAGTTGA
 
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JMSF027M07-           CTCAGGTGTGCCTCGTTAACATCCTCTCGCGCCTCACCTTGGAGGAGCGATGGAGAGGCC
                      ____________________________________________________________
consensus             CTCAGGTGTGCCTCGTTAACATCCTCTCGCGCCTCACCTTGGAGGAGCGATGGAGAGGCC
 
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JMSF027M07-           CCATGTTGGTCTGCAAGCCTTGGCTGAACGCATGCAAGGACCCTTCCCTCAACTCAGTTA
                      ____________________________________________________________
consensus             CCATGTTGGTCTGCAAGCCTTGGCTGAACGCATGCAAGGACCCTTCCCTCAACTCAGTTA
 
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JMSF027M07-           TCGACCTCGAAAGCCACTTCGGCTCCGCCACCGAATTGCCTCGCCATTGGACTCCCGAGT
                      ____________________________________________________________
consensus             TCGACCTCGAAAGCCACTTCGGCTCCGCCACCGAATTGCCTCGCCATTGGACTCCCGAGT
 
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JMSF027M07-           TCGAGCGTAGAATCGACTCCATGCTCCGATCCGTCGCTCTCTGGAGCGATGGCTCATTGA
                      ____________________________________________________________
consensus             TCGAGCGTAGAATCGACTCCATGCTCCGATCCGTCGCTCTCTGGAGCGATGGCTCATTGA
 
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JMSF027M07-           AGGAAATCCGCCTCAGACACTGCTCCGATCGTTCCCTCTCCTTGGTCGCTCAAAGTTGTG
                      ____________________________________________________________
consensus             AGGAAATCCGCCTCAGACACTGCTCCGATCGTTCCCTCTCCTTGGTCGCTCAAAGTTGTG
 
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JMSF027M07-           CAAACCTTCAGGTTCTCTCTATTCGGAGTTGCGCTCATGTTACTGATCAAGTCATGGCTA
rJMSF027M07+                                   GAGTTGCGCTCATGTTACTGATCAAGTCATGGCTA
rJMSF028M07+                                   GAGTTGCGCTCATGTTACTGATCAAGTCATGGCTA
                      ____________________________________________________________
consensus             CAAACCTTCAGGTTCTCTCTATTCGGAGTTGCGCTCATGTTACTGATCAAGTCATGGCTA
 
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JMSF027M07-           AAATAGCCTCAGGGTGCCCGTTACTTCGGGAAGTTGATATCAGCTACTGCTATGAAATAT
rJMSF027M07+          AAATAGCCTCAGGGTGCCCGTTACTTCGGGAAGTTGATATCAGCTACTGCTATGAAATAT
rJMSF028M07+          AAATAGCCTCAGGGTGCCCGTTACTTCGGGAAGTTGATATCAGCTACTGCTATGAAATAT
                      ____________________________________________________________
consensus             AAATAGCCTCAGGGTGCCCGTTACTTCGGGAAGTTGATATCAGCTACTGCTATGAAATAT
 
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JMSF027M07-           CTCACGAGTCTTTGGCGCTAATAGGAAGGAATTGTACCAATCTACAAGTTCTGAGGAGAA
rJMSF027M07+          CTCACGAGTCTTTGGCGCTAATAGGAAGGAATTGTACCAATCTACAAGTTCTGAGGAGAA
rJMSF028M07+          CTCACGAGTCTTTGGCGCTAATAGGAAGGAATTGTACCAATCTACAAGTTCTGAGGAGAA
                      ____________________________________________________________
consensus             CTCACGAGTCTTTGGCGCTAATAGGAAGGAATTGTACCAATCTACAAGTTCTGAGGAGAA
 
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JMSF027M07-           GCCTGATGAATTGGTTGGATCCTTCCCAACATGCCCGCGTTGTCCCCAAGGAGTATCTAA
rJMSF027M07+          GCCTGATGAATTGGTTGGATCCTTCCCAACATGCCCGCGTTGTCCCCAAGGAGTATCTAA
rJMSF028M07+          GCCTGATGAATTGGTTGGATCCTTCCCAACATGCCCGCGTTGTCCCCAAGGAGTATCTAA
                      ____________________________________________________________
consensus             GCCTGATGAATTGGTTGGATCCTTCCCAACATGCCCGCGTTGTCCCCAAGGAGTATCTAA
 
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JMSF027M07-           ATGCATGCCCTCAAGATGGGGATTCAGAAGCTGCTGCAATTGCAAAGTACATGCCTCATC
rJMSF027M07+          ATGCATGCCCTCAAGATGGGGATTCAGAAGCTGCTGCAATTGCAAAGTACATGCCTCATC
rJMSF028M07+          ATGCATGCCCTCAAGATGGGGATTCAGAAGCTGCTGCAATTGCAAAGTACATGCCTCATC
                      ____________________________________________________________
consensus             ATGCATGCCCTCAAGATGGGGATTCAGAAGCTGCTGCAATTGCAAAGTACATGCCTCATC
 
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JMSF027M07-           TCGTAACGCTTGAACTTCAGT                                       
rJMSF027M07+          TCGTAACGCTTGAACTTCAGTTCTCCAAGCTCACGGCAAAAGGTTTAGACATGATATCTC
rJMSF028M07+          TCGTAACGCTTGAACTTCAGTTCTCCAAGCTCACGGCAAAAGGTTTAGACATGATATCTC
                      ____________________________________________________________
consensus             TCGTAACGCTTGAACTTCAGTTCTCCAAGCTCACGGCAAAAGGTTTAGACATGATATCTC
 
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rJMSF027M07+          AAGGCTGCCCAAACCTCGAGGATCTCGATCTTTCTGGATGTGCAAATCTGACTAGTAGGG
rJMSF028M07+          AAGGCTGCCCAAACCTCGAGGATCTCGATCTTTCTGGATGTGCAAATCTGACTAGTAGGG
                      ____________________________________________________________
consensus             AAGGCTGCCCAAACCTCGAGGATCTCGATCTTTCTGGATGTGCAAATCTGACTAGTAGGG
 
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rJMSF027M07+          ATATTATCAAGGCCTCTTGTCATCTGAAAAAGATGAAGAGTCTCAAGAAGCCAAACTTCT
rJMSF028M07+          ATATTATCAAGGCCTCTTGTCATCTGAAAAAGATGAAGAGTCTCAAGAAGCCAAACTTCT
                      ____________________________________________________________
consensus             ATATTATCAAGGCCTCTTGTCATCTGAAAAAGATGAAGAGTCTCAAGAAGCCAAACTTCT
 
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rJMSF027M07+          ACATTCCTAGAGCAGTCTTCAACGCCGCCGAGAGGTATGGCCATTGGCAACTTTATGATG
rJMSF028M07+          ACATTCCTAGAGCAGTCTTCAACGCCGCCGAGAGGTATGGCCATTGGCAACTTTATGATG
                      ____________________________________________________________
consensus             ACATTCCTAGAGCAGTCTTCAACGCCGCCGAGAGGTATGGCCATTGGCAACTTTATGATG
 
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rJMSF027M07+          AGCGATTCCAAACAGATGTTTTTCGGATTTGACATACTGGGAACTGGGAAGTGGTTACAC
rJMSF028M07+          AGCGATTCCAAACAGATGTTTTTCGGATTTGACATACTGGGAACTGGGAAGTGGTTACAC
                      ____________________________________________________________
consensus             AGCGATTCCAAACAGATGTTTTTCGGATTTGACATACTGGGAACTGGGAAGTGGTTACAC
 
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rJMSF027M07+          AAATAGTAGATATCTATGACTAAAAATAATTCCTTCATTGAAAATGTTGTGCTTTATATT
rJMSF028M07+          AAATAGTAGATATCTATGACTAAAAATAATTCCTTCATTGAAAATGTTGTGCTTTATATT
                      ____________________________________________________________
consensus             AAATAGTAGATATCTATGACTAAAAATAATTCCTTCATTGAAAATGTTGTGCTTTATATT
 
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rJMSF027M07+          TGAAGCCTGTTTGTAGAGATATTACATGTGCTACAGTTTTTAATTGTGTATTAATTAAGG
rJMSF028M07+          TGAAGCCTGTTTGTAGAGATATTACATGTGCTACAGTTTTTAATTGTGTATTAATTAAGG
                      ____________________________________________________________
consensus             TGAAGCCTGTTTGTAGAGATATTACATGTGCTACAGTTTTTAATTGTGTATTAATTAAGG