Contig 007141:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001K15Sequence217006338 (2)ref|XP_006349612.1|7e-07PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic-like [Solanum tu642007141 (2)gb|KDO51438.1|3e-71hypothetical protein CISIN_1g0090582mg, partial [Citrus sinensis]
JMSF028H16Sequence672006338 (2)ref|XP_004248727.1|2e-62PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic [Solanum lycoper722007141 (2)gb|KDO51438.1|2e-88hypothetical protein CISIN_1g0090582mg, partial [Citrus sinensis]

Alignment

This contig is upended


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rJMSF028H16+                                                                    CT
                      ____________________________________________________________
consensus                                                                       CT
 
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rJMSF028H16+          ATGGCGCCTCTAAAGATCAATGGAGACAAGAAGTTGTTCGGTACATTCCTGCCTATAGGT
                      ____________________________________________________________
consensus             ATGGCGCCTCTAAAGATCAATGGAGACAAGAAGTTGTTCGGTACATTCCTGCCTATAGGT
 
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rJMSF001K15+                          ATGTCAAGGGAATATCAATGTTAGCGCGTGACTTGCAGTCCATT
rJMSF028H16+          GATACTGATTCTCCTGATGTCAAGGGAATATCAATGTTAGCGCGTGACTTGCAGTCCATT
                      ____________________________________________________________
consensus             GATACTGATTCTCCTGATGTCAAGGGAATATCAATGTTAGCGCGTGACTTGCAGTCCATT
 
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rJMSF001K15+          ATCCTNTATGATAAAGAAGGGAAATTTGTTGGAGTCAGGCGGCCCAACTCTAAGCTTCCG
rJMSF028H16+          ATCCTTTATGATAAAGAAGGGAAATTTGTTGGAGTCAGGCGGCCCAACTCTAAGCTTCCG
                      ____________________________________________________________
consensus             ATCCTTTATGATAAAGAAGGGAAATTTGTTGGAGTCAGGCGGCCCAACTCTAAGCTTCCG
 
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rJMSF001K15+          ATTGAGATTGATGGAACCAAAATTCTAATAGTAGATGCAATTGGTAGCACTGGCCTTGAC
rJMSF028H16+          ATTGAGATTGATGGAACCAAAATTCTAATAGTAGATGCAATTGGTAGCACTGGCCTTGAC
                      ____________________________________________________________
consensus             ATTGAGATTGATGGAACCAAAATTCTAATAGTAGATGCAATTGGTAGCACTGGCCTTGAC
 
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rJMSF001K15+          CTGAAGAGCGACCCAGGGGTGCCAATCGTGTATGCGGGTTTTGGAGCTTTAATGCTTACG
rJMSF028H16+          CTGAAGAGCGACCCAGGGGTGCCAATCGTGTATGCGGGTTTTGGAGCTTTAATGCTTACG
                      ____________________________________________________________
consensus             CTGAAGAGCGACCCAGGGGTGCCAATCGTGTATGCGGGTTTTGGAGCTTTAATGCTTACG
 
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rJMSF001K15+          ACGTTCATCAGCTTCTTGTCACACAGTCAGATATGGGCGTTACAAGATGGAACAATGGTG
rJMSF028H16+          ACGTTCATCAGCTTCTTGTCACACAGTCAGATATGGGCGTTACAAGATGGAACAATGGTG
                      ____________________________________________________________
consensus             ACGTTCATCAGCTTCTTGTCACACAGTCAGATATGGGCGTTACAAGATGGAACAATGGTG
 
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rJMSF001K15+          GTTGTGGGAGGAAAGACTAACCGGGCGAAAGGTGAATTTCCAGATGCAATAAGCAGCTTG
rJMSF028H16+          GTTGTGGGAGGAAAGACTAACCGGGCGAAAGGTGAATTTCCAGATGCAATAAGCAGCTTG
                      ____________________________________________________________
consensus             GTTGTGGGAGGAAAGACTAACCGGGCGAAAGGTGAATTTCCAGATGCAATAAGCAGCTTG
 
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rJMSF001K15+          CTTGATCAAGTCCCTGAAATAGTTGAATCATCTCCTTCCAAAGAATCAAATGGTCTCAGT
rJMSF028H16+          CTTGATCAAGTCCCTGAAATAGTTGAATCATCTCCTTCCAAAGAATCAAATGGTCTCAGT
                      ____________________________________________________________
consensus             CTTGATCAAGTCCCTGAAATAGTTGAATCATCTCCTTCCAAAGAATCAAATGGTCTCAGT
 
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rJMSF001K15+          CTCTGAGGCATTTACTTGGATCAAAGAGTATTACATAACATAGTTCGACTCCACGGATGA
rJMSF028H16+          CTCTGAGGCATTTACTTGGATCAAAGAGTATTACATAACATAGTTCGACTCCACGGATGA
                      ____________________________________________________________
consensus             CTCTGAGGCATTTACTTGGATCAAAGAGTATTACATAACATAGTTCGACTCCACGGATGA
 
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rJMSF001K15+          TTCAGTCCGAGGAGAAACCAACACAAGTTGCCAGGAAAACTCTTCAATGATGGTTTGGTT
rJMSF028H16+          TTCAGTCCGAGGAGAAACCAACACAAGTTGCCAGGAAAACTCTTCAATGATGGTTTGGTT
                      ____________________________________________________________
consensus             TTCAGTCCGAGGAGAAACCAACACAAGTTGCCAGGAAAACTCTTCAATGATGGTTTGGTT
 
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rJMSF001K15+          AGAACTTATTCCATTGATTCCTTGTAGATCGGATTCAGAGCCTTCCAAGAATCATAAATT
rJMSF028H16+          AGAACTTATTCCATTGATTCCTTGTAGATCGGATTCAGAGCCTTCCAAGAATCATAAATT
                      ____________________________________________________________
consensus             AGAACTTATTCCATTGATTCCTTGTAGATCGGATTCAGAGCCTTCCAAGAATCATAAATT
 
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rJMSF001K15+          TCTGCTCTGTAGATATAATTGTACTTGTGTATA-CAGGAGAAAATTCATAGATAC     
rJMSF028H16+          TCTGCTCTGTAGATATAATTGTACTTGTGTATACCAGGAGAAAATTCATAGATACCATGA
                      ____________________________________________________________
consensus             TCTGCTCTGTAGATATAATTGTACTTGTGTATACCAGGAGAAAATTCATAGATACCATGA