Contig 007117:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS090E04Sequence626007117 (3)ref|XP_009770264.1|2e-78PREDICTED: transcription factor bHLH13-like [Nicotiana sylvestris]
JMSF023M19Sequence737007117 (3)ref|XP_006444826.1|2e-66hypothetical protein CICLE_v10019339mg [Citrus clementina] gb|ESR58066.1| hypoth
JMSF024F14Sequence699013373 (3)ref|XP_009627739.1|4e-17PREDICTED: transcription factor bHLH13-like [Nicotiana tomentosiformis]735007117 (3)ref|XP_006491293.1|8e-62PREDICTED: transcription factor bHLH13-like [Citrus sinensis] gb|KDO86499.1| hyp

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS090E04- ATTCGGATATTGAAGCTGCTGCTTCATGCAAGGAGGACCACCCAGG
                      ____________________________________________________________
consensus ATTCGGATATTGAAGCTGCTGCTTCATGCAAGGAGGACCACCCAGG
 
. : . : . : . : . : . :
JMFS090E04- TCTGCTCGACGAGAAGAGACCACGAAAACGAGGACGGAAACCTGCTAATGGAAGGGAAGA
rJMSF024F14+ GAGACCACGAAAACGAGGACGGAAACCTGNTAATGGAAGGGAAGA
                      ____________________________________________________________
consensus TCTGCTCGACGAGAAGAGACCACGAAAACGAGGACGGAAACCTGCTAATGGAAGGGAAGA
 
. : . : . : . : . : . :
JMFS090E04- G-CCCCTCAATCATGTAGAAGCTGAGAGACAACGGCGGGAAAAGCTGAACCAGCGGTTTT
rJMSF024F14+ GCCCCCTCAATCATGTAGAAGCTGAGAGACAACGGCGGGAAAAGCTGAACCAGCGGTTTT
rJMSF023M19+ CCCCTCAATCATGTAGAAGCTGAGAGACAACGGCGGGAAAAGCTGAACCAGCGGTTTT
                      ____________________________________________________________
consensus GCCCCCTCAATCATGTAGAAGCTGAGAGACAACGGCGGGAAAAGCTGAACCAGCGGTTTT
 
. : . : . : . : . : . :
JMFS090E04- ATGCACTACGAGCAGTAGTTCCAAACATTTCCAAGATGGACAAAGCTTCCCTCCTAGGAG
rJMSF024F14+ ATGCACTACGAGCAGTAGTTCCAAACATTTCCAAGATGGACAAAGCTTCCCTCCTAGGAG
rJMSF023M19+ ATGCACTACGAGCAGTAGTTCCAAACATTTCCAAGATGGACAAAGCTTCCCTCCTAGGAG
                      ____________________________________________________________
consensus ATGCACTACGAGCAGTAGTTCCAAACATTTCCAAGATGGACAAAGCTTCCCTCCTAGGAG
 
. : . : . : . : . : . :
JMFS090E04- ATGCCATTGCCTACATCACTGAGCTACAAAAGAAACTCAAGGACTTGGAATTGGAGAGGG
rJMSF024F14+ ATGCCATTGCCTACATCACTGAGCTACAAAAGAAACTCAAGGACTTGGAATTGGAGAGGG
rJMSF023M19+ ATGCCATTGCCTACATCACTGAGCTACAAAAGAAACTCAAGGACTTGGAATTGGAGAGGG
                      ____________________________________________________________
consensus ATGCCATTGCCTACATCACTGAGCTACAAAAGAAACTCAAGGACTTGGAATTGGAGAGGG
 
. : . : . : . : . : . :
JMFS090E04- AGAGAGTGGGGGGAGGCAGTAGTTCAAGAGAAACGAGTCCAAATTCGGAGATTCAAAACC
rJMSF024F14+ AGAGAGTGGGGGGAGGCAGTAGTTCAAGAGAAACGAGTCCAAATTCGGAGATTCAAAACC
rJMSF023M19+ AGAGAGTGGGGGGAGGCAGTAGTTCAAGAGAAACGAGTCCAAATTCGGAGATTCAAAACC
                      ____________________________________________________________
consensus AGAGAGTGGGGGGAGGCAGTAGTTCAAGAGAAACGAGTCCAAATTCGGAGATTCAAAACC
 
. : . : . : . : . : . :
JMFS090E04- ACCACCGAGTTCCCAACATCAGTATTGAAGCGGGTAAGAATGAAGTAATTGTAAGGGTGA
rJMSF024F14+ ACCACCGAGTTCCCAACATCAGTATTGAAGCGGGTAAGAATGAAGTAATTGTAAGGGTGA
rJMSF023M19+ ACCACCGAGTTCCCAACATCAGTATTGAAGCGGGTAAGAATGAAGTAATTGTAAGGGTGA
                      ____________________________________________________________
consensus ACCACCGAGTTCCCAACATCAGTATTGAAGCGGGTAAGAATGAAGTAATTGTAAGGGTGA
 
. : . : . : . : . : . :
JMFS090E04- GCTGCCCATTGGAAACCCATCCGGTATCAAGAATCATCCAAGCATTCAAAGAGGCACAGA
rJMSF024F14+ GCTGCCCATTGGAAACCCATCCGGTATCAAGAATCATCCAAGCATTCAAAGAGGCACAGA
rJMSF023M19+ GCTGCCCATTGGAAACCCATCCGGTATCAAGAATCATCCAAGCATTCAAAGAGGCACAGA
                      ____________________________________________________________
consensus GCTGCCCATTGGAAACCCATCCGGTATCAAGAATCATCCAAGCATTCAAAGAGGCACAGA
 
. : . : . : . : . : . :
JMFS090E04- TCAGAGTTGTTGAGTCCAAAGTGGCTGCAGGGACGGATACGGTGTTGCACACATTTGTGG
rJMSF024F14+ TCAGAGTTGTTGAGTCCAAAGTGGCTGCAGGGACGGATACGGTGTTGCACACATTTGTGG
rJMSF023M19+ TCAGAGTTGTTGAGTCCAAAGTGGCTGCAGGGACGGATACGGTGTTGCACACATTTGTGG
                      ____________________________________________________________
consensus TCAGAGTTGTTGAGTCCAAAGTGGCTGCAGGGACGGATACGGTGTTGCACACATTTGTGG
 
. : . : . : . : . : . :
JMFS090E04- TGAAGTCCAGTGGATCGGAGCCGCTGAC-AAGGACAAGTTGATTGCTGCATTTTCTTGCG
rJMSF024F14+ TGAAGTCCAGTGGATCGGAGCCGCTGACAAAGGACAAGTTGATTGCTGCATTTTCTTGCG
rJMSF023M19+ TGAAGTCCAGTGGATCGGAGCCGCTGACAAAGGACAAGTTGATTGCTGCATTTTCTTGCG
                      ____________________________________________________________
consensus TGAAGTCCAGTGGATCGGAGCCGCTGACAAAGGACAAGTTGATTGCTGCATTTTCTTGCG
 
. : . : . : . : . : . :
JMFS090E04- AATCATCAAGCTCTCTGCAGCAGCCGCGGCTGTCATCTGTTG
rJMSF024F14+ AATCATCAAGCTCTCTGCAGCAGCCGCGGCTGTCATCTGTTGTTGGGTTATAACAGTTAT
rJMSF023M19+ AATCATCAAGCTCTCTGCAGCAGCCGCGGCTGTCATCTGTTGTTGGGTTATAACAGTTAT
                      ____________________________________________________________
consensus AATCATCAAGCTCTCTGCAGCAGCCGCGGCTGTCATCTGTTGTTGGGTTATAACAGTTAT
 
. : . : . : . : . : . :
rJMSF024F14+ GGCAGCACACATAGTCTTAGCTTAAGAATGTAGTAGTAAATTGAGAAGGTTTAATGCGCT
rJMSF023M19+ GGCAGCACACATAGTCTTAGCTTAAGAATGTAGTAGTAAATTGAGAAGGTTTAATGCGCT
                      ____________________________________________________________
consensus GGCAGCACACATAGTCTTAGCTTAAGAATGTAGTAGTAAATTGAGAAGGTTTAATGCGCT
 
. : . : . : . : . : . :
rJMSF024F14+ TATGCAGAGATTTTGTTTATTATACTACACCCACCAGTTCAAGCCAGGAAATAGAAAAAA
rJMSF023M19+ TATGCAGAGATTTTGTTTATTATACTACACCCACCAGTTCAAGCCAGGAAATAGAAAAAA
                      ____________________________________________________________
consensus TATGCAGAGATTTTGTTTATTATACTACACCCACCAGTTCAAGCCAGGAAATAGAAAAAA
 
. : . : . : . : . : . :
rJMSF024F14+ TAACAATCTATTGACAAAACAATGTAGCAA
rJMSF023M19+ TAACAATCTATTGACAAAACAATGTAGCAATTTTTCTGCTCTTCATTAGCAATGCCAATA
                      ____________________________________________________________
consensus TAACAATCTATTGACAAAACAATGTAGCAATTTTTCTGCTCTTCATTAGCAATGCCAATA