Contig 007116:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021M24Sequence528000757 (5)ref|XP_009616503.1|3e-88PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis]690007116 (5)gb|KHG09712.1|1e-89Chaperonin CPN60-2, mitochondrial [Gossypium arboreum]
JMFF042P16Sequence652000757 (5)ref|XP_009616503.1|3e-112PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis]658007116 (5)gb|KHG09712.1|4e-57Chaperonin CPN60-2, mitochondrial [Gossypium arboreum]
JMSF016C10Sequence228000757 (5)emb|CDO99385.1|7e-17unnamed protein product [Coffea canephora]727007116 (5)gb|KHG09712.1|9e-94Chaperonin CPN60-2, mitochondrial [Gossypium arboreum]
JMSF023M09Sequence639000757 (5)ref|XP_009616503.1|2e-115PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis]791007116 (5)gb|KHG09712.1|2e-90Chaperonin CPN60-2, mitochondrial [Gossypium arboreum]
JMSF025A15Sequence678000757 (5)ref|XP_009616503.1|1e-99PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis]768007116 (5)gb|KHG09712.1|7e-102Chaperonin CPN60-2, mitochondrial [Gossypium arboreum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C10+                                                          GGAGGGGCCAGT
rJMSF025A15+              AAAGACTAGCTAAGCTCTCTGGTGGAGTGGCTGTATTAAAGATTGGAGGGGCCAGT
rJMFF021M24+                                                                     T
rJMSF023M09+                                                                 CCAGT
                      ____________________________________________________________
consensus                 AAAGACTAGCTAAGCTCTCTGGTGGAGTGGCTGTATTAAAGATTGGAGGGGCCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C10+          GAAGCTGAGGTTGGTGAGAAGAAAGATAGAGTCACTGATGCACTAAATGCCACCAAAGCA
rJMSF025A15+          GAAGCTGAGGTTGGTGAGAAGAAAGATAGAGTCACTGATGCACTAAATGCCACCAAAGCA
rJMFF021M24+          GAAGCTGAGGTTGGTGAGAAGAAAGATAGAGTCACTGATGCACTAAATGCCACCAAAGCA
rJMSF023M09+          GAAGCTGAGGTTGGTGAGAAGAAAGATAGAGTCACTGATGCACTAAATGCCACCAAAGCA
                      ____________________________________________________________
consensus             GAAGCTGAGGTTGGTGAGAAGAAAGATAGAGTCACTGATGCACTAAATGCCACCAAAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C10+          GCTGTTGAGGAAGGAATTGTACCTGGTGGCGGTGTTGCTCTTCTCTATGCCTCAAAAGAA
rJMSF025A15+          GCTGTTGAGGAAGGAATTGTACCTGGTGGCGGTGTTGCTCTTCTCTATGCCTCAAAAGAA
rJMFF021M24+          GCTGTTGAGGAAGGAATTGTACCTGGTGGCGGTGTTGCTCTTCTCTATGCCTCAAAAGAA
rJMSF023M09+          GCTGTTGAGGAAGGAATTGTACCTGGTGGCGGTGTTGCTCTTCTCTATGCCTCAAAAGAA
                      ____________________________________________________________
consensus             GCTGTTGAGGAAGGAATTGTACCTGGTGGCGGTGTTGCTCTTCTCTATGCCTCAAAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C10+          TTGGAGAAGCTCCCAACAGCTAACTTTGATCAGAAGATTGGTGTTCAAATTATTCAGAAT
rJMSF025A15+          TTGGAGAAGCTCCCAACAGCTAACTTTGATCAGAAGATTGGTGTTCAAATTATTCAGAAT
rJMFF021M24+          TTGGAGAAGCTCCCAACAGCTAACTTTGATCAGAAGATTGGTGTTCAAATTATTCAGAAT
rJMFF042P16+           TGGAGAAGCTCCCANCAGCTAACTTGATTCAGAAGATTGGTGTTCAAATTATTCAGAAT
rJMSF023M09+          TTGGAGAAGCTCCCAACAGCTAACTTTGATCAGAAGATTGGTGTTCAAATTATTCAGAAT
                      ____________________________________________________________
consensus             TTGGAGAAGCTCCCAACAGCTAACTTTGATCAGAAGATTGGTGTTCAAATTATTCAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C10+          GCCCTGAAGACGCCAGTGCACACAATAGCCTCTAATGCTGGAGTAGAGGGAGCTGTTGTC
rJMSF025A15+          GCCCTGAAGACGCCAGTGCACACAATAGCCTCTAATGCTGGAGTAGAGGGAGCTGTTGTC
rJMFF021M24+          GCCCTGAAGACGCCAGTGCACACAATAGCCTCTAATGCTGGAGTAGAGGGAGCTGTTGTC
rJMFF042P16+          GCCCTGAAGACGCCAGTGCACACAATAGCCTCTAATGCTGGAGTAGAGGGAGCTGTTGTC
rJMSF023M09+          GCCCTGAAGACGCCAGTGCACACAATAGCCTCTAATGCTGGAGTAGAGGGAGCTGTTGTC
                      ____________________________________________________________
consensus             GCCCTGAAGACGCCAGTGCACACAATAGCCTCTAATGCTGGAGTAGAGGGAGCTGTTGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C10+          GTTGGTAAACTGCTTGAGCAAGATAACGCTGATCTTGGATATGATGCGGCGAAAGGTGAG
rJMSF025A15+          GTTGGTAAACTGCTTGAGCAAGATAACGCTGATCTTGGATATGATGCGGCGAAAGGTGAG
rJMFF021M24+          GTTGGTAAACTGCTTGAGCAAGATAACGCTGATCTTGGATATGATGCGGCGAAAGGTGAG
rJMFF042P16+          GTTGGTAAACTGCTTGAGCAAGATAACGCTGATCTTGGATATGATGCGGCGAAAGGTGAG
rJMSF023M09+          GTTGGTAAACTGCTTGAGCAAGATAACGCTGATCTTGGATATGATGCGGCGAAAGGTGAG
                      ____________________________________________________________
consensus             GTTGGTAAACTGCTTGAGCAAGATAACGCTGATCTTGGATATGATGCGGCGAAAGGTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C10+          TATGTTGATATGGTTAAGGCAGGTATTATTGATCCGGTGAAAGTCATAAGAACAGCCTTG
rJMSF025A15+          TATGTTGATATGGTTAAGGCAGGTATTATTGATCCGGTGAAAGTCATAAGAACAGCCTTG
rJMFF021M24+          TATGTTGATATGGTTAAGGCAGGTATTATTGATCCGGTGAAAGTCATAAGAACAGCCTTG
rJMFF042P16+          TATGTTGATATGGTTAAGGCAGGTATTATTGATCCGGTGAAAGTCATAAGAACAGCCTTG
rJMSF023M09+          TATGTTGATATGGTTAAGGCAGGTATTATTGATCCGGTGAAAGTCATAAGAACAGCCTTG
                      ____________________________________________________________
consensus             TATGTTGATATGGTTAAGGCAGGTATTATTGATCCGGTGAAAGTCATAAGAACAGCCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C10+          GTTGATGCTGCTAGTGTATCTTCTCTCTTGACGACAACGGAGGCAGTGGTCGTTGAGCTT
rJMSF025A15+          GTTGATGCTGCTAGTGTATCTTCTCTCTTGACGACAACGGAGGCAGTGGTCGTTGAGCTT
rJMFF021M24+          GTTGATGCTGCTAGTGTATCTTCTCTCTTGACGACAACGGAGGCAGTGGTCGTTGAGCTT
rJMFF042P16+          GTTGATGCTGCTAGTGTATCTTCTCTCTTGACGACAACGGAGGCAGTGGTCGTTGAGCTT
rJMSF023M09+          GTTGATGCTGCTAGTGTATCTTCTCTCTTGACGACAACGGAGGCAGTGGTCGTTGAGCTT
                      ____________________________________________________________
consensus             GTTGATGCTGCTAGTGTATCTTCTCTCTTGACGACAACGGAGGCAGTGGTCGTTGAGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C10+          CCAAAGGACGAGAAGGAAACTCCAGCTGGTATGGGCGGTGGCATGGGCGGAATGGGTGGT
rJMSF025A15+          CCAAAGGACGAGAAGGAAACTCCAGCTGGTATGGGCGGTGGCATGGGCGGAATGGGTGGT
rJMFF021M24+          CCAAAGGACGAGAAGGAAACTCCAGCTGGTATGGGCGGTGGCATGGGCGGAATGGGTGGT
rJMFF042P16+          CCAAAGGACGAGAAGGAAACTCCAGCTGGTATGGGCGGTGGCATGGGCGGAATGGGTGGT
rJMSF023M09+          CCAAAGGACGAGAAGGAAACTCCAGCTGGTATGGGCGGTGGCATGGGCGGAATGGGTGGT
                      ____________________________________________________________
consensus             CCAAAGGACGAGAAGGAAACTCCAGCTGGTATGGGCGGTGGCATGGGCGGAATGGGTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C10+          ATGGACTATTGATAGGATCCATAATCCCCACCTAGTCATCTGCCTAAACACACAATTCTT
rJMSF025A15+          ATGGACTATTGATAGGATCCATAATCCCCACCTAGTCATCTGCCTAAACACACAATTCTT
rJMFF021M24+          ATGGACTATTGATAGGATCCATAATCCCCACCTAGTCATCTGCCTAAACACACAATTCTT
rJMFF042P16+          ATGGACTATTGATAGGATCCATAATCCCCACCTAGTCATCTGCCTAAACACACAATTCTT
rJMSF023M09+          ATGGACTATTGATAGGATCCATAATCCCCACCTAGTCATCTGCCTAAACACACAATTCTT
                      ____________________________________________________________
consensus             ATGGACTATTGATAGGATCCATAATCCCCACCTAGTCATCTGCCTAAACACACAATTCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C10+          TAACTCTCACAAATAAAAGAATCTAGGGTTCATCCCATTTTGGCAAAGACTAGAGGTGTT
rJMSF025A15+          TAACTCTCACAAATAAAAGAATCTAGGGTTCATCCCATTTTGGCAAAGACTAGAGGTGTT
rJMFF021M24+          TAACTCTCACAAATAAAAGAATCTAGGGTTCATCCCATTTTGGCAAAGACTAGAGGTGTT
rJMFF042P16+          TAACTCTCACAAATAAAAGAATCTAGGGTTCATCCCATTTTGGCAAAGACTAGAGGTGTT
rJMSF023M09+          TAACTCTCACAAATAAAAGAATCTAGGGTTCATCCCATTTTGGCAAAGACTAGAGGTGTT
                      ____________________________________________________________
consensus             TAACTCTCACAAATAAAAGAATCTAGGGTTCATCCCATTTTGGCAAAGACTAGAGGTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C10+          CCTGTAATCTAGTAACATATTATCCAAACCAGACTTGATGGTTTTCCATGATGAGGAAAT
rJMSF025A15+          CCTGTAATCTAGTAACATATTATCCAAACCAGACTTGATGGTTTTCCATGATGAGGAAAT
rJMFF021M24+          CCTGTAATCTAGTAACATATTATCCAAACCAGACTTGATGGTTTTCCATGATGAGGAAAT
rJMFF042P16+          CCTGTAATCTAGTAACATATTATCCAAACCAGACTTGATGGTTTTCCATGATGAGGAAAT
rJMSF023M09+          CCTGTAATCTAGTAACATATTATCCAAACCAGACTTGATGGTTTTCCATGATGAGGAAAT
                      ____________________________________________________________
consensus             CCTGTAATCTAGTAACATATTATCCAAACCAGACTTGATGGTTTTCCATGATGAGGAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016C10+          TGTAATTTTTGTCC                                              
rJMSF025A15+          TGTAATTTTTGTCCTTGACGGCTCGGATTCTAATTATTCTTGT                 
rJMFF021M24+          TGTAATTTTTGTCCTTGACGGCTCGGATT                               
rJMFF042P16+          TGTAATTTTTGTCCTTGACGGCTCGGATTCTAATTATTCTTGTTAACAAAGCCTTTTCTC
rJMSF023M09+          TGTAATTTTTGTCCTTGACGGCTCGGATTCTAATTATTCTTGTTAACAAAGCCTTTTCTC
                      ____________________________________________________________
consensus             TGTAATTTTTGTCCTTGACGGCTCGGATTCTAATTATTCTTGTTAACAAAGCCTTTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF042P16+          CCATTGAACTCAA                                               
rJMSF023M09+          CCATTGAACTCAATTCAAGAATATAGTTTCTAATTATTCTTGTAACAAAGCCTTTCTCCC
                      ____________________________________________________________
consensus             CCATTGAACTCAATTCAAGAATATAGTTTCTAATTATTCTTGTAACAAAGCCTTTCTCCC