Contig 007113:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019D07Sequence451006483 (2)ref|XP_006347433.1|8e-71PREDICTED: histone deacetylase 6-like [Solanum tuberosum]760007113 (2)ref|XP_006347433.1|5e-84PREDICTED: histone deacetylase 6-like [Solanum tuberosum]
JMSF022O14Sequence690006483 (2)ref|XP_006347433.1|3e-128PREDICTED: histone deacetylase 6-like [Solanum tuberosum]724007113 (2)ref|XP_006347433.1|7e-74PREDICTED: histone deacetylase 6-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF019D07+ TCTCAGATCTTTTAACGTTCCTTTAATGGTCTTGGGTGGT
rJMSF022O14+ TGGT
                      ____________________________________________________________
consensus TCTCAGATCTTTTAACGTTCCTTTAATGGTCTTGGGTGGT
 
. : . : . : . : . : . :
rJMSF019D07+ GGAGGGTATACAATTCGAAATGTTGCCCGGTGCTGGTGCTATGAGACAGCAGTAGCAGTG
rJMSF022O14+ GGAGGGTATACAATTCGAAATGNTGCCCGGTGCTGGTGCTATGAGACAGCAGTAGCAGTG
                      ____________________________________________________________
consensus GGAGGGTATACAATTCGAAATGTTGCCCGGTGCTGGTGCTATGAGACAGCAGTAGCAGTG
 
. : . : . : . : . : . :
rJMSF019D07+ GGGGTTGAACCTGATAATAAATTGCCTTATAACGAGTACTATGAATATTTTGGTCCTGAT
rJMSF022O14+ GGGGTTGAACCTGATAATAAATTGCCTTATAACGAGTACTATGAATATTTTGGTCCTGAT
                      ____________________________________________________________
consensus GGGGTTGAACCTGATAATAAATTGCCTTATAACGAGTACTATGAATATTTTGGTCCTGAT
 
. : . : . : . : . : . :
rJMSF019D07+ TATACACTTCATGTTGAACCACATCCCATGGAGAATCAGAACTCACCACGGGATTTGGAG
rJMSF022O14+ TATACACTTCATGTTGAACCACATCCCATGGAGAATCAGAACTCACCACGGGATTTGGAG
                      ____________________________________________________________
consensus TATACACTTCATGTTGAACCACATCCCATGGAGAATCAGAACTCACCACGGGATTTGGAG
 
. : . : . : . : . : . :
rJMSF019D07+ AAGATCAGGAATATGCTGCTCGAACAACTTTCTGAATTGCCACATGCACCAAGTGTTCCA
rJMSF022O14+ AAGATCAGGAATATGCTGCTCGAACAACTTTCTGAATTGCCACATGCACCAAGTGTTCCA
                      ____________________________________________________________
consensus AAGATCAGGAATATGCTGCTCGAACAACTTTCTGAATTGCCACATGCACCAAGTGTTCCA
 
. : . : . : . : . : . :
rJMSF019D07+ TTCCAGATGACTCCTTCCACTATTGAAGTTCCGGAAGAGAGAGAGGAAGATATGGATCAG
rJMSF022O14+ TTCCAGATGACTCCTTCCACTATTGAAGTTCCGGAAGAGAGAGAGGAAGATATGGATCAG
                      ____________________________________________________________
consensus TTCCAGATGACTCCTTCCACTATTGAAGTTCCGGAAGAGAGAGAGGAAGATATGGATCAG
 
. : . : . : . : . : . :
rJMSF019D07+ AGACGTAACCCCCGGATTTGGAATGGCGATGAATATTTTTCCGATGGTGAGGAAGATGAA
rJMSF022O14+ AGACGTAACCCCCGGATTTGGAATGGCGATGAATATTTTTCCGATGGTGAGGAAGATGAA
                      ____________________________________________________________
consensus AGACGTAACCCCCGGATTTGGAATGGCGATGAATATTTTTCCGATGGTGAGGAAGATGAA
 
. : . : . : . : . : . :
rJMSF019D07+ AAGCCTCGTCTACGAAGAAGTTCTGATGCTAATATGACGCCCAAGAGAAACTCTAACATG
rJMSF022O14+ AAGCCTCGTCTACGAAGAAGTTCTGATGCTAATATGACGCCCAAGAGAAACTCTAACATG
                      ____________________________________________________________
consensus AAGCCTCGTCTACGAAGAAGTTCTGATGCTAATATGACGCCCAAGAGAAACTCTAACATG
 
. : . : . : . : . : . :
rJMSF019D07+ AGGGAGTACTTTGATGGAATGGATGATAAAGACATGATCGATGCAGATAACTAGTGCAGT
rJMSF022O14+ AGGGAGTACTTTGATGGAATGGATGATAAAGACATGATCGATGCAGATAACTAGTGCAGT
                      ____________________________________________________________
consensus AGGGAGTACTTTGATGGAATGGATGATAAAGACATGATCGATGCAGATAACTAGTGCAGT
 
. : . : . : . : . : . :
rJMSF019D07+ GCTCCGTCCATTAAGAAAACCTTCACCCGGCAAAGTTTCTTACCAAGTAGCGCAAGCTGA
rJMSF022O14+ GCTCCGTCCATTAAGAAAACCTTCACCCGGCAAAGTTTCTTACCAAGTAGCGCAAGCTGA
                      ____________________________________________________________
consensus GCTCCGTCCATTAAGAAAACCTTCACCCGGCAAAGTTTCTTACCAAGTAGCGCAAGCTGA
 
. : . : . : . : . : . :
rJMSF019D07+ CAATTTGTGGTGGCTGAAAACTTTTCCCAGCTCACAATCAATTTTATTCGATCGGTACTT
rJMSF022O14+ CAATTTGTGGTGGCTGAAAACTTTTCCCAGCTCACAATCAATTTTATTCGATCGGTACTT
                      ____________________________________________________________
consensus CAATTTGTGGTGGCTGAAAACTTTTCCCAGCTCACAATCAATTTTATTCGATCGGTACTT
 
. : . : . : . : . : . :
rJMSF019D07+ ATCCTAGAAGTTGAAGAAACTATAGATAGTAAATAGGAAGACTTAGAGATATCTAGTTTA
rJMSF022O14+ ATCCTAGAAGTTGAAGAAACTATAGATAGTAAATAGGAAGACTTAGAGATATCTAGTTTA
                      ____________________________________________________________
consensus ATCCTAGAAGTTGAAGAAACTATAGATAGTAAATAGGAAGACTTAGAGATATCTAGTTTA
 
. : . : . : . : . : . :
rJMSF019D07+ ATTTGAACATGTTTCTTGCAATGCTTTATGTGAGATATGATCACTGTAATGTAAACATTT
rJMSF022O14+ ATTTGAACATGTTTCTTGCAATGCTTTATGTGAGATATGATCACTGTAATGTAAACATTT
                      ____________________________________________________________
consensus ATTTGAACATGTTTCTTGCAATGCTTTATGTGAGATATGATCACTGTAATGTAAACATTT