Contig 007113:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019D07Sequence451006483 (2)ref|XP_006347433.1|8e-71PREDICTED: histone deacetylase 6-like [Solanum tuberosum]760007113 (2)ref|XP_006347433.1|5e-84PREDICTED: histone deacetylase 6-like [Solanum tuberosum]
JMSF022O14Sequence690006483 (2)ref|XP_006347433.1|3e-128PREDICTED: histone deacetylase 6-like [Solanum tuberosum]724007113 (2)ref|XP_006347433.1|7e-74PREDICTED: histone deacetylase 6-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF019D07+                              TCTCAGATCTTTTAACGTTCCTTTAATGGTCTTGGGTGGT
rJMSF022O14+                                                                  TGGT
                      ____________________________________________________________
consensus                                 TCTCAGATCTTTTAACGTTCCTTTAATGGTCTTGGGTGGT
 
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rJMSF019D07+          GGAGGGTATACAATTCGAAATGTTGCCCGGTGCTGGTGCTATGAGACAGCAGTAGCAGTG
rJMSF022O14+          GGAGGGTATACAATTCGAAATGNTGCCCGGTGCTGGTGCTATGAGACAGCAGTAGCAGTG
                      ____________________________________________________________
consensus             GGAGGGTATACAATTCGAAATGTTGCCCGGTGCTGGTGCTATGAGACAGCAGTAGCAGTG
 
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rJMSF019D07+          GGGGTTGAACCTGATAATAAATTGCCTTATAACGAGTACTATGAATATTTTGGTCCTGAT
rJMSF022O14+          GGGGTTGAACCTGATAATAAATTGCCTTATAACGAGTACTATGAATATTTTGGTCCTGAT
                      ____________________________________________________________
consensus             GGGGTTGAACCTGATAATAAATTGCCTTATAACGAGTACTATGAATATTTTGGTCCTGAT
 
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rJMSF019D07+          TATACACTTCATGTTGAACCACATCCCATGGAGAATCAGAACTCACCACGGGATTTGGAG
rJMSF022O14+          TATACACTTCATGTTGAACCACATCCCATGGAGAATCAGAACTCACCACGGGATTTGGAG
                      ____________________________________________________________
consensus             TATACACTTCATGTTGAACCACATCCCATGGAGAATCAGAACTCACCACGGGATTTGGAG
 
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rJMSF019D07+          AAGATCAGGAATATGCTGCTCGAACAACTTTCTGAATTGCCACATGCACCAAGTGTTCCA
rJMSF022O14+          AAGATCAGGAATATGCTGCTCGAACAACTTTCTGAATTGCCACATGCACCAAGTGTTCCA
                      ____________________________________________________________
consensus             AAGATCAGGAATATGCTGCTCGAACAACTTTCTGAATTGCCACATGCACCAAGTGTTCCA
 
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rJMSF019D07+          TTCCAGATGACTCCTTCCACTATTGAAGTTCCGGAAGAGAGAGAGGAAGATATGGATCAG
rJMSF022O14+          TTCCAGATGACTCCTTCCACTATTGAAGTTCCGGAAGAGAGAGAGGAAGATATGGATCAG
                      ____________________________________________________________
consensus             TTCCAGATGACTCCTTCCACTATTGAAGTTCCGGAAGAGAGAGAGGAAGATATGGATCAG
 
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rJMSF019D07+          AGACGTAACCCCCGGATTTGGAATGGCGATGAATATTTTTCCGATGGTGAGGAAGATGAA
rJMSF022O14+          AGACGTAACCCCCGGATTTGGAATGGCGATGAATATTTTTCCGATGGTGAGGAAGATGAA
                      ____________________________________________________________
consensus             AGACGTAACCCCCGGATTTGGAATGGCGATGAATATTTTTCCGATGGTGAGGAAGATGAA
 
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rJMSF019D07+          AAGCCTCGTCTACGAAGAAGTTCTGATGCTAATATGACGCCCAAGAGAAACTCTAACATG
rJMSF022O14+          AAGCCTCGTCTACGAAGAAGTTCTGATGCTAATATGACGCCCAAGAGAAACTCTAACATG
                      ____________________________________________________________
consensus             AAGCCTCGTCTACGAAGAAGTTCTGATGCTAATATGACGCCCAAGAGAAACTCTAACATG
 
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rJMSF019D07+          AGGGAGTACTTTGATGGAATGGATGATAAAGACATGATCGATGCAGATAACTAGTGCAGT
rJMSF022O14+          AGGGAGTACTTTGATGGAATGGATGATAAAGACATGATCGATGCAGATAACTAGTGCAGT
                      ____________________________________________________________
consensus             AGGGAGTACTTTGATGGAATGGATGATAAAGACATGATCGATGCAGATAACTAGTGCAGT
 
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rJMSF019D07+          GCTCCGTCCATTAAGAAAACCTTCACCCGGCAAAGTTTCTTACCAAGTAGCGCAAGCTGA
rJMSF022O14+          GCTCCGTCCATTAAGAAAACCTTCACCCGGCAAAGTTTCTTACCAAGTAGCGCAAGCTGA
                      ____________________________________________________________
consensus             GCTCCGTCCATTAAGAAAACCTTCACCCGGCAAAGTTTCTTACCAAGTAGCGCAAGCTGA
 
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rJMSF019D07+          CAATTTGTGGTGGCTGAAAACTTTTCCCAGCTCACAATCAATTTTATTCGATCGGTACTT
rJMSF022O14+          CAATTTGTGGTGGCTGAAAACTTTTCCCAGCTCACAATCAATTTTATTCGATCGGTACTT
                      ____________________________________________________________
consensus             CAATTTGTGGTGGCTGAAAACTTTTCCCAGCTCACAATCAATTTTATTCGATCGGTACTT
 
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rJMSF019D07+          ATCCTAGAAGTTGAAGAAACTATAGATAGTAAATAGGAAGACTTAGAGATATCTAGTTTA
rJMSF022O14+          ATCCTAGAAGTTGAAGAAACTATAGATAGTAAATAGGAAGACTTAGAGATATCTAGTTTA
                      ____________________________________________________________
consensus             ATCCTAGAAGTTGAAGAAACTATAGATAGTAAATAGGAAGACTTAGAGATATCTAGTTTA
 
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rJMSF019D07+          ATTTGAACATGTTTCTTGCAATGCTTTATGTGAGATATGATCACTGTAATGTAAACATTT
rJMSF022O14+          ATTTGAACATGTTTCTTGCAATGCTTTATGTGAGATATGATCACTGTAATGTAAACATTT
                      ____________________________________________________________
consensus             ATTTGAACATGTTTCTTGCAATGCTTTATGTGAGATATGATCACTGTAATGTAAACATTT