Contig 007112:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003I22Sequence324002235 (8)680007112 (3)emb|CDP14061.1|1e-51unnamed protein product [Coffea canephora]
JMSF022G09Sequence641002235 (8)ref|XP_009788205.1|176PREDICTED: uncharacterized protein LOC104236057 [Nicotiana sylvestris]736007112 (3)emb|CDP14061.1|4e-50unnamed protein product [Coffea canephora]
JMSF023H18Sequence649002235 (8)ref|XP_009788205.1|175PREDICTED: uncharacterized protein LOC104236057 [Nicotiana sylvestris]667007112 (3)emb|CDP14061.1|1e-50unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF022G09+                                                      TACCGCCATTTTCTTC
                      ____________________________________________________________
consensus                                                         TACCGCCATTTTCTTC
 
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rJMSF023H18+           TTATCAACAGCAAAGCCATCAGTGCTTTTGGCGCCCAAGCAACCTTTTAATTTGGCTGA
rJMSF003I22+           TTATCAACAGCAAAGCCATCAGTGCTTTTGGCGCCCAAGCAACCTTTTAATTTGGCTGA
rJMSF022G09+          TTTATCAACAGCAAAGCCATCAGTGCTTTTGGCGCCCAAGCAACCTTTTAATTTGGCTGA
                      ____________________________________________________________
consensus             TTTATCAACAGCAAAGCCATCAGTGCTTTTGGCGCCCAAGCAACCTTTTAATTTGGCTGA
 
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rJMSF023H18+          TGTTTCCCCTTTAGATTTGCCACCTCTTCTACCTGATCCATTGGTCAGGTTGCCATTAAC
rJMSF003I22+          TGTTTCCCCTTTAGATTTGCCACCTCTTCTACCTGATCCATTGGTCAGGTTGCCATTAAC
rJMSF022G09+          TGTTTCCCCTTTAGATTTGCCACCTCTTCTACCTGATCCATTGGTCAGGTTGCCATTAAC
                      ____________________________________________________________
consensus             TGTTTCCCCTTTAGATTTGCCACCTCTTCTACCTGATCCATTGGTCAGGTTGCCATTAAC
 
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rJMSF023H18+          TTTGCCAGTCTCGCAGCAGATACCAACCTTCACTCCTTTAATTTGCGATCCTATAGTCCA
rJMSF003I22+          TTTGCCAGTCTCGCAGCAGATACCAACCTTCACTCCTTTAATTTGCGATCCTATAGTCCA
rJMSF022G09+          TTTGCCAGTCTCGCAGTAGATACCAACCTTCACTCCTTTAATTTGCGATCCTATAGTCCA
                      ____________________________________________________________
consensus             TTTGCCAGTCTCGCAGCAGATACCAACCTTCACTCCTTTAATTTGCGATCCTATAGTCCA
 
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rJMSF023H18+          CATTCCATTTATTGATGTTTGTTCTTCAGGGCAAGGCTACTTGGTGAGTGCAGGCCCAGG
rJMSF003I22+          CATTCCATTTATTGATGTTTGTTCTTCAGGGCAAGGCTACTTGGTGAGTGCAGGCCCAGG
rJMSF022G09+          CATTCCATTTATTGATGTTTGTTCTTCAGGGCAAGGCTACTTGGTGAGTGCAGGCCCAGG
                      ____________________________________________________________
consensus             CATTCCATTTATTGATGTTTGTTCTTCAGGGCAAGGCTACTTGGTGAGTGCAGGCCCAGG
 
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rJMSF023H18+          TATGTCAACTGGCATTCCCCCATTGCACCCAAATCTTGTGAGCCCATTAATTCCCGGGGC
rJMSF003I22+          TATGTCAACTGGCATTCCCCCATTGCACCCAAATCTTGTGAGCCCATTAATTCCCGAGGC
rJMSF022G09+          TATGTCAACTGGCATTCCCCCATTGCACCCAAATCTTGTGAGCCCATTAATTCCCGAGGC
                      ____________________________________________________________
consensus             TATGTCAACTGGCATTCCCCCATTGCACCCAAATCTTGTGAGCCCATTAATTCCCGAGGC
 
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rJMSF023H18+          CGAGTCTGTGGTAGAAAAGAGTGCCAGAGAGACGCTTCGTATGCTCATGAATAGCTCCAA
rJMSF003I22+          CGAGTCTGTGGTAGAAAAGAGTGCCAGAGAGACGCTTCGTATGCTCATGAATAGCTCCAA
rJMSF022G09+          CGAGTCTGTGGTAGAAAAGAGTGCCAGAGAGACGCTTCGTATGCTCATGAATAGCTCCAA
                      ____________________________________________________________
consensus             CGAGTCTGTGGTAGAAAAGAGTGCCAGAGAGACGCTTCGTATGCTCATGAATAGCTCCAA
 
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rJMSF023H18+          TCAACCCAATGCACCATTGATGAGTGTTCTGCCATCTTTTCTGCCTAGCAGTGAAGAGAA
rJMSF003I22+          TCAACCCAATGCACCATTGATGAGTGTTCTGCCATCTTTTCTGCCTAGCAGTGAAGAGAA
rJMSF022G09+          TCAACCCAATGCACCATTGATGAGTGTTCTGCCATCTTTTCTGCCTAGCAGTGAAGAGAA
                      ____________________________________________________________
consensus             TCAACCCAATGCACCATTGATGAGTGTTCTGCCATCTTTTCTGCCTAGCAGTGAAGAGAA
 
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rJMSF023H18+          GCTGAGCGTGTTAGGTGGTGGAAGCAGGGGCCTCTACAGTGGAACCATAGACATAGATGT
rJMSF003I22+          GCTGAGCGTGTTAGGTGGTGGAAGCAGGGGCCTCTACAGTGGAACCATAGACATAGATGT
rJMSF022G09+          GCTGAGCGTGTTAGGTGGTGGAAGCAGGGGCCTCTACAGTGGAACCATAGACATAGATGT
                      ____________________________________________________________
consensus             GCTGAGCGTGTTAGGTGGTGGAAGCAGGGGCCTCTACAGTGGAACCATAGACATAGATGT
 
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rJMSF023H18+          TACCACAGTATCCGTAGCCAAAATCAGCAAAAGGGACATTGGAGAAAAGCATTTTGTTGA
rJMSF003I22+          TACCACAGTATCCGTAGCCAAAATCAGCAAAAGGGACATTGGAGAAAAGCATTTTGTTGA
rJMSF022G09+          TACCACAGTATCCGTAGCCAAAATCAGCAAAAGGGACATTGGAGAAAAGCATTTTGTTGA
                      ____________________________________________________________
consensus             TACCACAGTATCCGTAGCCAAAATCAGCAAAAGGGACATTGGAGAAAAGCATTTTGTTGA
 
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rJMSF023H18+          GGCGACAGAAATGCCATCTAACTCAGATGGCACTATGTTTGGCGATGATGGTTTTTCACA
rJMSF003I22+          GGCGACAGAAATGCCATCTAACTCAGATGGCACTATGTTTGGCGATGATGGTTTTTCACA
rJMSF022G09+          GGCGACAGAAATGCCATCTAACTCAGATGGCACTATGTTTGGCGATGATGGTTTTTCACA
                      ____________________________________________________________
consensus             GGCGACAGAAATGCCATCTAACTCAGATGGCACTATGTTTGGCGATGATGGTTTTTCACA
 
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rJMSF023H18+          TTCAGGAGATGGAAAGAGCAGCGCATGATTTGTTGTCTTTCTAGTACTTTGTAGATTCAA
rJMSF003I22+          TTCAGGAGATGGAAAGAGCAGCGCATGATTTGTTGTCTTTCTAGTACTTTGTAGATTCAA
rJMSF022G09+          TTCAGGAGATGGAAAGAGCAGCGCATGATTTGTTGTCTTTCTAGTACTTTGTAGATTCAA
                      ____________________________________________________________
consensus             TTCAGGAGATGGAAAGAGCAGCGCATGATTTGTTGTCTTTCTAGTACTTTGTAGATTCAA
 
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rJMSF023H18+          AGCTTTTT                                                    
rJMSF003I22+          AGCTTTTTGTTAGAAC                                            
rJMSF022G09+          AGCTTTTTGTTAGAACTGTACAGTCGACTCTCTCAACCATAAGCAATTATTTTCTGCTTT
                      ____________________________________________________________
consensus             AGCTTTTTGTTAGAACTGTACAGTCGACTCTCTCAACCATAAGCAATTATTTTCTGCTTT