Contig 007108:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024J12+                      GAGGAATGAGCAGTTCTGGTTTAGAAATCCGGGGGCTAAGAGTCATGA
rJMSF009L02+                 GAAGGGAGGAATGAGCAGTTCTGGTTTAGAAATCCGGGGGNTAAGAGTCATGA
                      ____________________________________________________________
consensus                    GAAGGGAGGAATGAGCAGTTCTGGTTTAGAAATCCGGGGGCTAAGAGTCATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024J12+          TATGATGAGGTAATATCTTGACGCCTAAGAGAGGAAAAGAACACGCCGGCTTGCTTTGAG
rJMSF009L02+          TATGATGAGGTAATATCTTGACGCCTAAGAGAGGAAAAGAACACGCCGGCTTGCTTTGAG
                      ____________________________________________________________
consensus             TATGATGAGGTAATATCTTGACGCCTAAGAGAGGAAAAGAACACGCCGGCTTGCTTTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024J12+          AGTTGAGTTGTTTTCTGGGAATGGATGATTGTGTGTTGATCCCCCATGGGACCCTGGAAA
rJMSF009L02+          AGTTGAGTTGTTTTCTGGGAATGGATGATTGTGTGTTGATCCCCCATGGGACCCTGGAAA
rJMSF017P09+                           GGAANGGATGATTGTGTGTTGATCCCCCATGGGACCCTGGAAA
rJMSF022A17+                           GGAATGGATGATTGTGTGTTGATCCCCCATGGGACCCTGGAAA
                      ____________________________________________________________
consensus             AGTTGAGTTGTTTTCTGGGAATGGATGATTGTGTGTTGATCCCCCATGGGACCCTGGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024J12+          GGGAGGAATGCACGCTTGATGGGGAATTTGGGTCCCAAACCTCACTTTCCACCCCCTTTT
rJMSF009L02+          GGGAGGAATGCACGCTTGATGGGGAATTTGGGTCCCAAACCTCACTTTCCACCCCCTTTT
rJMSF017P09+          GGGAGGAATGCACGCNTGATGGGGAATTTGGGTCCCAAACCTCACTTTCCACCCCCTTTT
rJMSF022A17+          GGGAGGAATGCACGCCTGATGGGGAATTTGGGTCCCAAACCTCACTTTCCACCCCCTTTT
                      ____________________________________________________________
consensus             GGGAGGAATGCACGCTTGATGGGGAATTTGGGTCCCAAACCTCACTTTCCACCCCCTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024J12+          TTTAGATACTGTCACATTACATATTGTGGGGATTCCCCAATNTTATCCCACCAGTAAATC
rJMSF009L02+          TTTAGATACTGTCACATTACATATTGTGGGGATTCCCCAATCTTATCCCACCAGTAAATC
rJMSF017P09+          TTTAGATACTGTCACATTACATATTGTGGGGATTCCCCAATCTTATCCCACCAGTAAATC
rJMSF022A17+          TTTAGATACTGTCACATTACATATTGTGGGGATTCCCCAATCTTATCCCACCAGTAAATC
                      ____________________________________________________________
consensus             TTTAGATACTGTCACATTACATATTGTGGGGATTCCCCAATCTTATCCCACCAGTAAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024J12+          ACAGCAACAACAATNTGCAACTATTGCTGCACTTTCGCGTTACATCAGGTATTCCCCGCC
rJMSF009L02+          ACAGCAACAACAATCTGCAACTATTGCTGCACTTTCGCGTTACATCAGGTATTCCCCGCC
rJMSF017P09+          ACAGCAACAACAATCTGCAACTATTGCTGCACTTTCGCGTTACATCAGGTATTCCCCGCC
rJMSF022A17+          ACAGCAACAACAATCTGCAACTATTGCTGCACTTTCGCGTTACATCAGGTATTCCCCGCC
                      ____________________________________________________________
consensus             ACAGCAACAACAATCTGCAACTATTGCTGCACTTTCGCGTTACATCAGGTATTCCCCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024J12+          CCCCGCCTTCATCACCCCGGGACCACTCCTTTCCAACAGGTNTTACCTGACACGAACATG
rJMSF009L02+          CCCCGCCTTCATCACCCCGGGACCACTCCTTTCCAACAGGTCTTACCTGACACGAACATG
rJMSF017P09+          CCCCGCCTTCATCACCCCGGGACCACTCCTTTCCAACAGGTNTTACCTGACACGAACATG
rJMSF022A17+          CCCCGCCTTCATCACCCCGGGACCACTCCTTTCCAACAGGTCTTACCTGACACGAACATG
                      ____________________________________________________________
consensus             CCCCGCCTTCATCACCCCGGGACCACTCCTTTCCAACAGGTCTTACCTGACACGAACATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024J12+          ATTAGTNTTAGCTGAATGGTCAAGAAAACTGGGCTCGAGGTNTTACTCCTGAACATGATT
rJMSF009L02+          ATTAGTCTTAGCTGAATGGTCAAGAAAACTGGGCTCGAGGTCTTACTCCTGAACATGATT
rJMSF017P09+          ATTAGTNTTAGCTGAATGGTCAAGAAAACTGGGCTCGAGGTCTTACTCCTGAACATGATT
rJMSF022A17+          ATTAGTCTTAGCTGAATGGTCAAGAAAACTGGGCTCGAGGTCTTACTCCTGAACATGATT
                      ____________________________________________________________
consensus             ATTAGTCTTAGCTGAATGGTCAAGAAAACTGGGCTCGAGGTCTTACTCCTGAACATGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024J12+          AGTCTTTAGCTGAATGGTCAAAAGAACTGCGCTTCAGGTCTTACTTGACACGAACATGAT
rJMSF009L02+          AGTCTTTAGCTGAATGGTCAAAAGAACTGCGCTTCAGGTCTTACTTGACACGAACATGAT
rJMSF017P09+          AGTCTTTAGCTGAATGGTCAAAAGAACTGCGCTTCAGGTCTTACTTGACNCGAACATGAT
rJMSF022A17+          AGTCTTTAGCTGAATGGTCAAAAGAACTGCGCTTCAGGTCTTACTTGACACGAACATGAT
                      ____________________________________________________________
consensus             AGTCTTTAGCTGAATGGTCAAAAGAACTGCGCTTCAGGTCTTACTTGACACGAACATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024J12+          TAGTCAGTCTTTTAGCTGAATGGTCGGGAAAAAAGAACCTTTTTGTCGAGGTCTCATATC
rJMSF009L02+          TAGTCAGTCTTTTAGCTGAATGGTCGGGAAAAAAGAACCTTTTTGTCGAGGTCTCATATC
rJMSF017P09+          TAGTCAGTCTTTTAGCTGAATGGGCGGAAAAAAAGAACCTTTTTGTCGAGGTCTCATATC
rJMSF022A17+          TAGTCAGTCTTTTAGCTGAATGGTCGGGAAAAAAGAACCTTTTTGTCGAGGTCTCATATC
                      ____________________________________________________________
consensus             TAGTCAGTCTTTTAGCTGAATGGTCGGGAAAAAAGAACCTTTTTGTCGAGGTCTCATATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024J12+          GCCAGATGAGCCGAGTAACTTGCCTTGTGTGGGGATGACATGTTTATATATATTATATAT
rJMSF009L02+          GCCAGATGAGCCGAGTAACTTGCCTTGTGTGGGGATGACATGTTTATATATATTATATAT
rJMSF017P09+          GCCAGATGAGCCGAGTAACTTGCCTTGNGTGGGGATGACATGTTTATATATATTATATAT
rJMSF022A17+          GCCAGATGAGCCGAGTAACTTGCCTTGTGTGGGGATGACATGTTTATATATATTATATAT
                      ____________________________________________________________
consensus             GCCAGATGAGCCGAGTAACTTGCCTTGTGTGGGGATGACATGTTTATATATATTATATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024J12+          GTGTATATTTCTTTCCACATATATATATAGTTGTTGTGATGCATGCTTTGAAGCCATGAT
rJMSF009L02+          GTGTATATTTCTTTCCACATATATATATAGTTGTTGTGATGCATGCTTTGAAGCCATGAT
rJMFF044L18+                                           TTGTGATGCATGCTTTGAAGCCATGAT
rJMSF017P09+          GNGTATATTTCTTTCCNCATATATATATAGTTGTTGTGATGCNTGCTTTGAAGCCNTGAT
rJMSF022A17+          GTGTATATTTCTTTCCACATATATATATAGTTGTTGTGATGCATGCTTTGAAGCCATGAT
                      ____________________________________________________________
consensus             GTGTATATTTCTTTCCACATATATATATAGTTGTTGTGATGCATGCTTTGAAGCCATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024J12+          GATGGTGATAT                                                 
rJMSF009L02+          GATGGTGATAT                                                 
rJMFF044L18+          GATGGTGATATGTATTTTTTTTTTTCAAATTATTTTAGTATTTGGGGGAGTGTTTTTGTG
rJMSF017P09+          GATGGTGATATGTATTTTTTTTTTTCAAATTATTTTAGTATTTGGGTGAGTGTTTTTGTG
rJMSF022A17+          GATGGTGATATGTA--TTTTTTTTTCAAATTATTTTAGTATTTGGGTGAGTGTTTTTGTG
                      ____________________________________________________________
consensus             GATGGTGATATGTATTTTTTTTTTTCAAATTATTTTAGTATTTGGGTGAGTGTTTTTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF044L18+          AAATTGTTTACCATGGCAAATGGTGTCATAGGTTGT                        
rJMSF017P09+          AAATTGTCTACCATGGCAAATGGTGTCATAGGTTGTCTTTATCTCTCTTGTTCTTACATG
rJMSF022A17+          AAATTGTCTACCATGGCAAATGGTGTCATAGGTTGTCTTTATCTCTCTTGTTCTTACATG
                      ____________________________________________________________
consensus             AAATTGTCTACCATGGCAAATGGTGTCATAGGTTGTCTTTATCTCTCTTGTTCTTACATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017P09+          GCATGCAC                                                    
rJMSF022A17+          GCATGCACGCATTCTACAAGTGTGAGACAGATATGTTTGAGTTTTGATTCCTTGCCAATT
                      ____________________________________________________________
consensus             GCATGCACGCATTCTACAAGTGTGAGACAGATATGTTTGAGTTTTGATTCCTTGCCAATT