| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF043J13 | Sequence | 625 | 000241 (2) | ref|XP_009760145.1| | 3e-20 | PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Nicotiana sylvestris] | 510 | 007102 (3) | ref|XP_003529662.1| | 6e-66 | PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X1 [Glycine max] |
| JMSF021A17 | Sequence | 650 | 000241 (2) | ref|XP_009760145.1| | 2e-41 | PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Nicotiana sylvestris] | 830 | 007102 (3) | ref|XP_006365858.1| | 1e-102 | PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Solanum tuberosum] |
| JMSF049G19 | Sequence | 678 | 021193 | ref|XP_009625673.1| | 1e-73 | PREDICTED: E3 ubiquitin-protein ligase UPL5 [Nicotiana tomentosiformis] | 737 | 007102 (3) | ref|XP_009760145.1| | 8e-110 | PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF021A17+ AGCTGCAAGCAAATATTGGAGATGGATGCGGAATTAGTGGATCAAGATACT
____________________________________________________________
consensus AGCTGCAAGCAAATATTGGAGATGGATGCGGAATTAGTGGATCAAGATACT
. : . : . : . : . : . :
rJMSF049G19+ TGAGGAATTGGGCTCCCGGAAGACTGTTGAACNTT
rJMSF021A17+ CTAGGTCTTACATTGTCTCTGAAANTGAGGAATTGGGCTCCCGGAAGACTGTTGAAC-TT
____________________________________________________________
consensus CTAGGTCTTACATTGTCTCTGAAANTGAGGAATTGGGCTCCCGGAAGACTGTTGAACNTT
. : . : . : . : . : . :
rJMSF049G19+ GTCCCAATGGGAAAAGTACTGTTGTAGATAGTAAGAATAGAAAGCAATATGTTAATCATC
rJMSF021A17+ GTCCCAATGGGAAAAGTACTGTTGTAGATAGTAAGAATAGAAAGCAATATGTTAATCATC
____________________________________________________________
consensus GTCCCAATGGGAAAAGTACTGTTGTAGATAGTAAGAATAGAAAGCAATATGTTAATCATC
. : . : . : . : . : . :
rJMSF049G19+ TTATTCAGCACCGTTTTGTCACATCTATAGCAGAACAGGTAGCCCATTTTGCTAAAGGTT
rJMSF021A17+ TTATTCAGCACCGTTTTGTCACATCTATAGCAGAACAGGTAGCCCATTTTGCTAAAGGTT
____________________________________________________________
consensus TTATTCAGCACCGTTTTGTCACATCTATAGCAGAACAGGTAGCCCATTTTGCTAAAGGTT
. : . : . : . : . : . :
rJMFF043J13+ TTG
rJMSF049G19+ TTGCAGACATCATTAGTAACTTCAACCTTCAAAGATCATTCTTCCAGAACTTAGATCTTG
rJMSF021A17+ TTGCAGACATCATTAGTAACTTCAACCTTCAAAGATCATTCTTCCAGAACTTAGATCTTG
____________________________________________________________
consensus TTGCAGACATCATTAGTAACTTCAACCTTCAAAGATCATTCTTCCAGAACTTAGATCTTG
. : . : . : . : . : . :
rJMFF043J13+ AAGACCTTGACTCGATGCTTTATGGGAGTGAAACCTCTGTTTCTGTGGAAGACTGGAAAG
rJMSF049G19+ AAGACCTTGACTCGATGCTTTATGGGAGTGAAACCTCTGTTTCTGTGGAAGACTGGAAAG
rJMSF021A17+ AAGACCTTGACTCGATGCTTTATGGGAGTGAAACCTCTGTTTCTGTGGAAGACTGGAAAG
____________________________________________________________
consensus AAGACCTTGACTCGATGCTTTATGGGAGTGAAACCTCTGTTTCTGTGGAAGACTGGAAAG
. : . : . : . : . : . :
rJMFF043J13+ CACATACTGATTATCATGGCTTCAAAGAGAGTGAACCTCAGATATCCTGGTTTTGGGAGA
rJMSF049G19+ CACATACTGATTATCATGGCTTCAAAGAGAGTGAACCTCAGATATCCTGGTTTTGGGAGA
rJMSF021A17+ CACATACTGATTATCATGGCTTCAAAGAGAGTGAACCTCAGATATCCTGGTTTTGGGAGA
____________________________________________________________
consensus CACATACTGATTATCATGGCTTCAAAGAGAGTGAACCTCAGATATCCTGGTTTTGGGAGA
. : . : . : . : . : . :
rJMFF043J13+ TTGTTGGGAAAATGACAGCAGAGCAGAGAAAAGTTCTTCTGTTTTTCTGGACTTCTGTAA
rJMSF049G19+ TTGTTGGGAAAATGACAGCAGAGCAGAGAAAAGTTCTTCTGTTTTTCTGGACTTCTGTAA
rJMSF021A17+ TTGTTGGGAAAATGACAGCAGAGCAGAGAAAAGTTCTTCTGTTTTTCTGGACTTCTGTAA
____________________________________________________________
consensus TTGTTGGGAAAATGACAGCAGAGCAGAGAAAAGTTCTTCTGTTTTTCTGGACTTCTGTAA
. : . : . : . : . : . :
rJMFF043J13+ AGTTTTTACCGGTAGAGGGTTTTAGAGGCCTGCCTTTTAGGCTTTACATCTACAGAAACT
rJMSF049G19+ AGTTTTTACCGGTAGAGGGTTTTAGAGGCCTGCCTTCTAGGCTTTACATCTACAGAAACT
rJMSF021A17+ AGTTTTTACCGGTAGAGGGTTTTAGAGGCCTGCCTTCTAGGCTTTACATCTACAGAAACT
____________________________________________________________
consensus AGTTTTTACCGGTAGAGGGTTTTAGAGGCCTGCCTTCTAGGCTTTACATCTACAGAAACT
. : . : . : . : . : . :
rJMFF043J13+ TTGAGCCATTTGATCGCTTGCCCTCCTCACACACATGCTTCTATCGCCTGTGCTTCCCTC
rJMSF049G19+ CTGAGCCATTTGATCGCTTGCCCTCCTCACACACATGCTTCTATCGCCTGTGCTTCCCTC
rJMSF021A17+ CTGAGCCATTTGATCGCTTGCCCTCCTCACACACATGCTTCTATCGCCTGTGCTTCCCTC
____________________________________________________________
consensus CTGAGCCATTTGATCGCTTGCCCTCCTCACACACATGCTTCTATCGCCTGTGCTTCCCTC
. : . : . : . : . : . :
rJMFF043J13+ GTTACCCGTCCATGGCTGTAATGCAAGATCGGTTTGACATCATCACTCAGGAGCATGTAG
rJMSF049G19+ GTTACCCGTCCATGGCTGTAATGCAAGATCGGTTTGACATCATCACTCAGGAGCATGTAG
rJMSF021A17+ GTTACCCGTCCATGGCTGTAATGCAAGATCGGTTTGACATCATCACTCAGGAGCATGTAG
____________________________________________________________
consensus GTTACCCGTCCATGGCTGTAATGCAAGATCGGTTTGACATCATCACTCAGGAGCATGTAG
. : . : . : . : . : . :
rJMFF043J13+ GCTGCAGCTTTGGCACATGGTAACCCTTGTGGTTTTAGGGATCAAATGATTCTTGATTGC
rJMSF049G19+ GCTGCAGCTTTGGCACATGGTAACCCTTGTGGTTTTAGGGATCAAATGATTCTTGATTGC
rJMSF021A17+ GCTGCAGCTTTGGCACATGGTAACCCTTGTGGTTTTAGGGATCAAATGATTCTTGATTGC
____________________________________________________________
consensus GCTGCAGCTTTGGCACATGGTAACCCTTGTGGTTTTAGGGATCAAATGATTCTTGATTGC
. : . : . : . : . : . :
rJMFF043J13+ ACATAGATATGTACTCAGGTTGTATATTATATGGAACATATACATTATATTATATAGGAT
rJMSF049G19+ ACATAGATATGTACTCAGGTTGTATATTATATGGAACATATACATTATATTATATAGGAT
rJMSF021A17+ ACATAGATATGTACTCAGGTTGTATATTATATGGAACATATACATTATATTATATAGGAT
____________________________________________________________
consensus ACATAGATATGTACTCAGGTTGTATATTATATGGAACATATACATTATATTATATAGGAT
. : . : . : . : . : . :
rJMFF043J13+ AATCTTAATCCA
rJMSF049G19+ AATCTTAATCCATTTAT
rJMSF021A17+ AATCTTAATCCATTTATTGAAACTTGAGCACTTGAGCTGTTGTAAAACCTGTCATACCAT
____________________________________________________________
consensus AATCTTAATCCATTTATTGAAACTTGAGCACTTGAGCTGTTGTAAAACCTGTCATACCAT