Contig 007100:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020H20Sequence656007100 (2)emb|CDY47041.1|2e-05BnaAnng08290D [Brassica napus]715007100 (2)ref|XP_010934103.1|8e-08PREDICTED: protein FD-like [Elaeis guineensis]

Alignment

This contig is upended


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JMSF020H20-                                                                   GGCC
                      ____________________________________________________________
consensus                                                                     GGCC
 
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JMSF020H20-           AGCCACTGTTTGTAGCTACCAAAACATATATGGATCCAATTCGGGAAGACATGAACCTCT
                      ____________________________________________________________
consensus             AGCCACTGTTTGTAGCTACCAAAACATATATGGATCCAATTCGGGAAGACATGAACCTCT
 
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JMSF020H20-           CCTCTCTCCAGAATGGCGGCCCGACAAGCGTCAAAGGTTTCATGGCGGCGCCGCCCTTGG
                      ____________________________________________________________
consensus             CCTCTCTCCAGAATGGCGGCCCGACAAGCGTCAAAGGTTTCATGGCGGCGCCGCCCTTGG
 
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JMSF020H20-           AACACTCTCCGCCCATTAATCTCACTCTCAACTTGGTATCCGAGCTCCCCTGCTATGACA
                      ____________________________________________________________
consensus             AACACTCTCCGCCCATTAATCTCACTCTCAACTTGGTATCCGAGCTCCCCTGCTATGACA
 
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JMSF020H20-           ATTTGGAGCCCTTGACGCAAGAACTTCAGAATGCGGTTTTTGATGATGTCTTGCCGACTT
                      ____________________________________________________________
consensus             ATTTGGAGCCCTTGACGCAAGAACTTCAGAATGCGGTTTTTGATGATGTCTTGCCGACTT
 
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JMSF020H20-           GCAATATCCCCCCTGCCGCCAACGGGGGAAAGAGGTCGCCGCCGCCCGACCAGAAACGCC
                      ____________________________________________________________
consensus             GCAATATCCCCCCTGCCGCCAACGGGGGAAAGAGGTCGCCGCCGCCCGACCAGAAACGCC
 
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JMSF020H20-           GCCGGCTTATCAAGAACCGGATCTCAGCTGCTCGATCAAGAGCTAGAAAACAGGAAAGCC
                      ____________________________________________________________
consensus             GCCGGCTTATCAAGAACCGGATCTCAGCTGCTCGATCAAGAGCTAGAAAACAGGAAAGCC
 
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JMSF020H20-           CCCCACACCATTATTAATTCATGCTACTAATAACATTTTTTTTTGTTATACCACGAGTTA
                      ____________________________________________________________
consensus             CCCCACACCATTATTAATTCATGCTACTAATAACATTTTTTTTTGTTATACCACGAGTTA
 
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JMSF020H20-           CCAGACCGTATTATACTCAAACTAATGTTATTCTAGTTTGAGTAATAAGGAAAAAGATGT
                      ____________________________________________________________
consensus             CCAGACCGTATTATACTCAAACTAATGTTATTCTAGTTTGAGTAATAAGGAAAAAGATGT
 
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JMSF020H20-           GTGACTCACTCACATATTCTTCTGAACTATATGTATCAGTGACATTAACTTGTAATCTTA
rJMSF020H20+                                  AACTATATGTATCAGTGACATTAACTTGTAATCTTA
                      ____________________________________________________________
consensus             GTGACTCACTCACATATTCTTCTGAACTATATGTATCAGTGACATTAACTTGTAATCTTA
 
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JMSF020H20-           CTGAGAATAGTAAATTCCGTCTTGTAACCCTAACCAGCAAAATATTAAATTGGGTAAATT
rJMSF020H20+          CTGAGAATAGTAAATTCCGTCTTGTAACCCTAACCAGCAAAATATTAAATTGGGTAAATT
                      ____________________________________________________________
consensus             CTGAGAATAGTAAATTCCGTCTTGTAACCCTAACCAGCAAAATATTAAATTGGGTAAATT
 
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JMSF020H20-           AGTTTAGCTTGATTGTAGTCTACCATTTCAAATCAAGAAGTCTAAATAGACG        
rJMSF020H20+          AGTTTAGCTTGATTGTAGTCTACCATTTCAAATCAAGAAGTCTAAATAGACGACTCTAAT
                      ____________________________________________________________
consensus             AGTTTAGCTTGATTGTAGTCTACCATTTCAAATCAAGAAGTCTAAATAGACGACTCTAAT
 
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rJMSF020H20+          AGGAATCGAACGAACTTATAACCTTGTAGTTGATTATATTGCAGGCATACACGCATGAGT
                      ____________________________________________________________
consensus             AGGAATCGAACGAACTTATAACCTTGTAGTTGATTATATTGCAGGCATACACGCATGAGT
 
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rJMSF020H20+          TGGAGCTGGAAGTTGCCGAGTTGAGTAAAGAAAATGCGAGGCTCAAGAAACAGCATCACG
                      ____________________________________________________________
consensus             TGGAGCTGGAAGTTGCCGAGTTGAGTAAAGAAAATGCGAGGCTCAAGAAACAGCATCACG
 
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rJMSF020H20+          AGTTGTCGGTAGCTGCGGCCGATCACCGTCGCCAGCACCGCCCTCTCCGCCGCACGTCGT
                      ____________________________________________________________
consensus             AGTTGTCGGTAGCTGCGGCCGATCACCGTCGCCAGCACCGCCCTCTCCGCCGCACGTCGT
 
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rJMSF020H20+          CCTCTCCCTTCTGACTCCATCATCTTTCCCGCCACCACTACAACTTTGCGGCCGCTTCAC
                      ____________________________________________________________
consensus             CCTCTCCCTTCTGACTCCATCATCTTTCCCGCCACCACTACAACTTTGCGGCCGCTTCAC
 
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rJMSF020H20+          AAGCTTATGAGGCGGCGTTTATTTTTTTAATTTAAGACATGCAAATCAGTATCAGTGTTG
                      ____________________________________________________________
consensus             AAGCTTATGAGGCGGCGTTTATTTTTTTAATTTAAGACATGCAAATCAGTATCAGTGTTG
 
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rJMSF020H20+          GAATTAAAATTTTATCAATTTGAAATGTGATAATTGTAATTATAATTAGGAAACTTAATT
                      ____________________________________________________________
consensus             GAATTAAAATTTTATCAATTTGAAATGTGATAATTGTAATTATAATTAGGAAACTTAATT
 
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rJMSF020H20+          TGTGACCATTTTGATAGAACAATCCTGTTTTACTCATCTTTCTCTATAATATAAAGTAAG
                      ____________________________________________________________
consensus             TGTGACCATTTTGATAGAACAATCCTGTTTTACTCATCTTTCTCTATAATATAAAGTAAG
 
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rJMSF020H20+          AGACTTTTGGTAACCAAAAAAAAGAGAAGAAAATCATGGTTTCCTGCCCTAAAAACGACA
                      ____________________________________________________________
consensus             AGACTTTTGGTAACCAAAAAAAAGAGAAGAAAATCATGGTTTCCTGCCCTAAAAACGACA
 
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rJMSF020H20+          ACGTTTAGGGATTGGTATTTTTTTATATATATAAAATTTGTTGCTATATATTGAAAAATG
                      ____________________________________________________________
consensus             ACGTTTAGGGATTGGTATTTTTTTATATATATAAAATTTGTTGCTATATATTGAAAAATG