| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027A14 | Sequence | 570 | 007092 (4) | ref|XP_009608205.1| | 2e-55 | PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like [Nicotiana to | 729 | 007092 (4) | ref|XP_009608205.1| | 1e-54 | PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like [Nicotiana to |
| JMSF019H21 | Sequence | 485 | 007092 (4) | ref|XP_009608205.1| | 2e-53 | PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like [Nicotiana to | 678 | 007092 (4) | ref|XP_009608205.1| | 2e-52 | PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like [Nicotiana to |
This contig is upended
. : . : . : . : . : . :
JMFF027A14- CTCTCTCAGTCAGCCAGGCCACC
rJMFF027A14+ TCAGTCAGCCAGGCCACC
____________________________________________________________
consensus CTCTCTCAGTCAGCCAGGCCACC
. : . : . : . : . : . :
JMFF027A14- GCTTTCCTCCTATATATCCCGTAGAGGCTGTTAAACCCTAGCCGCTCTCTTGCCTTCAGC
JMSF019H21- GCTCTCTTGCCTTCAGC
rJMFF027A14+ GCTTTCCTCCTATATATCCCGTAGAGGCTGTTAAACCCTAGCCGCTCTCTTGCCTTCAGC
rJMSF019H21+ GCTCTCTTGCCTTCAGC
____________________________________________________________
consensus GCTTTCCTCCTATATATCCCGTAGAGGCTGTTAAACCCTAGCCGCTCTCTTGCCTTCAGC
. : . : . : . : . : . :
JMFF027A14- TTCTTCCTTAAACCCAAAACCTCTTCTTTATCACAGCTGTAGTAATGGCTTTCTGCAATA
JMSF019H21- TTCTTCCTTAAACCCAAAACCTCTTCTTTATCACAGCTGTAGTAATGGCTTTCTGCAATA
rJMFF027A14+ TTCTTCCTTAAACCCAAAACCTCTTCTTTATCACAGCTGTAGTAATGGCTTTCTGCAATA
rJMSF019H21+ TTCTTCCTTAAACCCAAAACCTCTTCTTTATCACAGCTGTAGTAATGGCTTTCTGCAATA
____________________________________________________________
consensus TTCTTCCTTAAACCCAAAACCTCTTCTTTATCACAGCTGTAGTAATGGCTTTCTGCAATA
. : . : . : . : . : . :
JMFF027A14- AACTTGGGAGTCTGGTTAGGCGAAGTGTTTTGACTAACAATGCATCAACTGCTCAAGCTC
JMSF019H21- AACTTGGGAGTCTGGTTAGGCGAAGTGTTTTGACTAACAATGCATCAACTGCTCAAGCTC
rJMFF027A14+ AACTTGGGAGTCTGGTTAGGCGAAGTGTTTTGACTAACAATGCATCAACTGCTCAAGCTC
rJMSF019H21+ AACTTGGGAGTCTGGTTAGGCGAAGTGTTTTGACTAACAATGCATCAACTGCTCAAGCTC
____________________________________________________________
consensus AACTTGGGAGTCTGGTTAGGCGAAGTGTTTTGACTAACAATGCATCAACTGCTCAAGCTC
. : . : . : . : . : . :
JMFF027A14- CAATGGCCTCCATGTTTAATGCTTTACGCTGCATGTCCACAAAGCTTTTCATTGGTGGCC
JMSF019H21- CAATGGCCTTCATGTTTAATGCTTTACGCTGCATGTCCACAAAGCTTTTCATTGGTGGCC
rJMFF027A14+ CAATGGCCTCCATGTTTAATGCTTTACGCTGCATGTCCACAAAGCTTTTCATTGGTGGCC
rJMSF019H21+ CAATGGCCTTCATGTTTAATGCTTTACGCTGCATGTCCACAAAGCTTTTCATTGGTGGCC
____________________________________________________________
consensus CAATGGCCTTCATGTTTAATGCTTTACGCTGCATGTCCACAAAGCTTTTCATTGGTGGCC
. : . : . : . : . : . :
JMFF027A14- TTTCATATAGTACGGATGACAGTAACCTGAAGGAAGCATTCTCCAGCTTTGGTGAGATTG
JMSF019H21- TTTCATATAGTACGGGTGACAGTAACCTGAAGGAAGCATTCTCCAGCTTTGGTGAGATTG
rJMFF027A14+ TTTCATATAGTACGGATGACAGTAACCTGAAGGAAGCATTCTCCAGCTTTGGTGAGATTG
rJMSF019H21+ TTTCATATAGTACGGGTGACAGTAACCTGAAGGAAGCATTCTCCAGCTTTGGTGAGATTG
____________________________________________________________
consensus TTTCATATAGTACGGGTGACAGTAACCTGAAGGAAGCATTCTCCAGCTTTGGTGAGATTG
. : . : . : . : . : . :
JMFF027A14- TGGAAGCAAGAGTGATTACTGACAGAGATTCCGGGAGATCAAGAGGATTTGGGTTTGTGA
JMSF019H21- TGGAAGCAAGAGTGATTACTGACAGAGATTCCGGGAGATCAAGAGGATTTGGGTTTGTGA
rJMFF027A14+ TGGAAGCAAGAGTGATTACTGACAGAGATTCCGGGAGATCAAGAGGATTTGGGTTTGTGA
rJMSF019H21+ TGGAAGCAAGAGTGATTACTGACAGAGATTCCGGGAGATCAAGAGGATTTGGGTTTGTGA
____________________________________________________________
consensus TGGAAGCAAGAGTGATTACTGACAGAGATTCCGGGAGATCAAGAGGATTTGGGTTTGTGA
. : . : . : . : . : . :
JMFF027A14- ATTTCACAGAGGCTGAATCGGCAAACGAAGCTCTCTCGGCTATGGATGGACAGCAACTGC
JMSF019H21- ATTTCACAGAGGCTGAATCGGCAAACGAAGCTCTCTCGGCTATGGATGGACAGCAACTGC
rJMFF027A14+ ATTTCACAGAGGCTGAATCGGCAAACGAAGCTCTCTCGGCTATGGATGGACAGCAACTGC
rJMSF019H21+ ATTTCACAGAGGCTGAATCGGCAAACGAAGCTCTCTCGGCTATGGATGGACAGCAACTGC
____________________________________________________________
consensus ATTTCACAGAGGCTGAATCGGCAAACGAAGCTCTCTCGGCTATGGATGGACAGCAACTGC
. : . : . : . : . : . :
JMFF027A14- ACGGAAGAAACATTCGTGTGTCTTATGCCCAAGAGAGGTCCAGTTCAGGTCCTCCTCGTG
JMSF019H21- ACGGAAGAAACATTCGTGTGTCTTATGCCCAAGAGAGGTCCAGTTCAGGTCCTCCTCGTG
rJMFF027A14+ ACGGAAGAAACATTCGTGTGTCTTATGCCCAAGAGAGGTCCAGTTCAGGTCCTCCTCGTG
rJMSF019H21+ ACGGAAGAAACATTCGTGTGTCTTATGCCCAAGAGAGGTCCAGTTCAGGTCCTCCTCGTG
____________________________________________________________
consensus ACGGAAGAAACATTCGTGTGTCTTATGCCCAAGAGAGGTCCAGTTCAGGTCCTCCTCGTG
. : . : . : . : . : . :
JMFF027A14- ATAGGGGTTTTGGGGGCGGTGAAAGGTATGGGCGCGGGTCTGGAGGATACTAAGTCTATG
JMSF019H21- ATAGGGGTTTTGGGGGCGGTGAAAGGTATGGGCGCGGGTCTGGAGGA
rJMFF027A14+ ATAGGGGTTTTGGGGGCGGTGAAAGGTATGGGCGCGGGTCTGGAGGATACTAAGTCTATG
rJMSF019H21+ ATAGGGGTTTTGGGGGCGGTGAAAGGTATGGGCGCGGGTCTGGAGGATACTAAGTCTATG
____________________________________________________________
consensus ATAGGGGTTTTGGGGGCGGTGAAAGGTATGGGCGCGGGTCTGGAGGATACTAAGTCTATG
. : . : . : . : . : . :
JMFF027A14- TTTAGAT
rJMFF027A14+ TTTAGATTGGTCAATTGTCTATATGGGCATATGGCATTTTAAGTTTGTGGAAACTTGGCT
rJMSF019H21+ TTTAGATTGGTCAATTGTCTATATGGGCATATGGCATTTTAAGTTTGTGGAAACTTGGCT
____________________________________________________________
consensus TTTAGATTGGTCAATTGTCTATATGGGCATATGGCATTTTAAGTTTGTGGAAACTTGGCT
. : . : . : . : . : . :
rJMFF027A14+ TGTGGTTGGGGTAATCTTAAGATAGAATGGTTGATGTTCTTATTGTTCTCCTAAACAGTT
rJMSF019H21+ TGTGGTTGGGGTAATCTTAAGATAGAATGGTTGATGTTCTTATTGTTCTCCTAAACAGTT
____________________________________________________________
consensus TGTGGTTGGGGTAATCTTAAGATAGAATGGTTGATGTTCTTATTGTTCTCCTAAACAGTT
. : . : . : . : . : . :
rJMFF027A14+ ATCTTGTCATTTTTAAACTGCATCAAATATGAAGCTTGTTTCTATAGAGCT
rJMSF019H21+ ATCTTGTCATTTTTAAACTGCATCAAATATGAAGCTTGTTTCTATAGAGCTTCCAGGATA
____________________________________________________________
consensus ATCTTGTCATTTTTAAACTGCATCAAATATGAAGCTTGTTTCTATAGAGCTTCCAGGATA