Contig 007087:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018H05Sequence764007087 (3)ref|XP_011072209.1|2e-50PREDICTED: protein HAPLESS 2 [Sesamum indicum]
JMSF018I05Sequence551007995 (3)ref|XP_009630067.1|2e-33PREDICTED: protein HAPLESS 2-like [Nicotiana tomentosiformis]780007087 (3)ref|XP_011072209.1|5e-52PREDICTED: protein HAPLESS 2 [Sesamum indicum]
JMSF039B09Sequence661007995 (3)ref|XP_009782610.1|2e-53PREDICTED: protein HAPLESS 2 isoform X2 [Nicotiana sylvestris]796007087 (3)ref|XP_011072209.1|5e-65PREDICTED: protein HAPLESS 2 [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF039B09+ TGATTTTGGTGAAGTTGATCGAGCAGAGTGTCAATTCACAACAACTGC
                      ____________________________________________________________
consensus TGATTTTGGTGAAGTTGATCGAGCAGAGTGTCAATTCACAACAACTGC
 
. : . : . : . : . : . :
rJMSF039B09+ TACTGTTTTTGATAACGGATCACAGATACCATTCCAACCCCCCAAGACAAGCATACATGG
rJMSF018I05+ TTTTGATAACGGATCACAGATACCATTCCAACCCCCCAAGACAAGCATACATGG
rJMSF018H05+ GGATCACAGATACCATTCCAACCCCCCANGACAAGCATACATGG
                      ____________________________________________________________
consensus TACTGTTTTTGATAACGGATCACAGATACCATTCCAACCCCCCAAGACAAGCATACATGG
 
. : . : . : . : . : . :
rJMSF039B09+ TTTCTTTGAAACAATCGAAGAATTGTGGAACAAGTTGTGGGAAGGTTTGGTGGATTTTCT
rJMSF018I05+ TTTCTTTGAAACAATCGAAGAATTGTGGAACAAGTTGTGGGAAGGTTTGGTGGATTTTCT
rJMSF018H05+ TTTCTTTGAAACAATCGAAGAATTGTGGAACAAGTTGTGGGAAGGTTTGGTGGATTTTCT
                      ____________________________________________________________
consensus TTTCTTTGAAACAATCGAAGAATTGTGGAACAAGTTGTGGGAAGGTTTGGTGGATTTTCT
 
. : . : . : . : . : . :
rJMSF039B09+ CACAGGAGAAAGCTGCAGAAGGAACTGCTCTGGGATTTTTGATGTGGGCTGTCATGTGCA
rJMSF018I05+ CACAGGAGAAAGCTGCAGAAGGAACTGCTCTGGGATTTTTGATGTGGGCTGTCATGTGCA
rJMSF018H05+ CACAGGAGAAAGCTGCAGAAGGAACTGCTCTGGGATTTTTGATGTGGGCTGTCATGTGCA
                      ____________________________________________________________
consensus CACAGGAGAAAGCTGCAGAAGGAACTGCTCTGGGATTTTTGATGTGGGCTGTCATGTGCA
 
. : . : . : . : . : . :
rJMSF039B09+ GTACATTTGTATGAATTGGATAGTTTTGGTTGCTCTATTCGCAGCAATCTTTCCAACTTT
rJMSF018I05+ GTACATTTGTATGAATTGGATAGTTTTGGTTGCTCTATTCGCAGCAATCTTTCCAACTTT
rJMSF018H05+ GTACATTTGTATGAATTGGATAGTTTTGGTTGCTCTATTCGCAGCAATCTTTCCAACTTT
                      ____________________________________________________________
consensus GTACATTTGTATGAATTGGATAGTTTTGGTTGCTCTATTCGCAGCAATCTTTCCAACTTT
 
. : . : . : . : . : . :
rJMSF039B09+ GGTTGTGCTTGTTTGGCTTCTGCATCAGAAAGGGATATTTGATCCTATATATGACTGGTG
rJMSF018I05+ GGTTGTGCTTGTTTGGCTTCTGCATCAGAAAGGGATATTTGATCCTATATATGACTGGTG
rJMSF018H05+ GGTTGTGCTTGTTTGGCTTCTGCATCAGAAAGGGATATTTGATCCTATATATGACTGGTG
                      ____________________________________________________________
consensus GGTTGTGCTTGTTTGGCTTCTGCATCAGAAAGGGATATTTGATCCTATATATGACTGGTG
 
. : . : . : . : . : . :
rJMSF039B09+ GGAAGATCACTTTTCAGTCCCTAAAGGGAGCAGGAGTTCATTGATGCACCATTCCAATCC
rJMSF018I05+ GGAAGATCACTTTTCAGTCCCTAAAGGGAGCAGGAGTTCATTGATGCACCATTCCAATCC
rJMSF018H05+ GGAAGATCACTTTTCAGTCCCTAAAGGGAGCAGGAGTTCATTGATGCACCATTCCAATCC
                      ____________________________________________________________
consensus GGAAGATCACTTTTCAGTCCCTAAAGGGAGCAGGAGTTCATTGATGCACCATTCCAATCC
 
. : . : . : . : . : . :
rJMSF039B09+ TCATCAGCTAAAACTTCACTTAAAGAGACACCACCATAAGCACCATGAAACAAGACATCA
rJMSF018I05+ TCATCAGCTAAAACTTCACTTAAAGAGACACCACCATAAGCACCATGAAACAAGACATCA
rJMSF018H05+ TCATCAGCTAAAACTTCACTTAAAGAGACACCACCATAAGCACCATGAAACAAGACATCA
                      ____________________________________________________________
consensus TCATCAGCTAAAACTTCACTTAAAGAGACACCACCATAAGCACCATGAAACAAGACATCA
 
. : . : . : . : . : . :
rJMSF039B09+ TCATCATCATCATCATAAGCACCAAAGGAGAACATCTACTCACCATCCATCTGGCGAAGC
rJMSF018I05+ TCATCATCATCATCATAAGCACCAAAGGAGAACATCTACTCACCATCCATCTGGCGAAGC
rJMSF018H05+ TCATCATCATCATCATAAGCACCAAAGGAGAACATCTACTCACCATCCATCTGGCGAAGC
                      ____________________________________________________________
consensus TCATCATCATCATCATAAGCACCAAAGGAGAACATCTACTCACCATCCATCTGGCGAAGC
 
. : . : . : . : . : . :
rJMSF039B09+ TGATTACCGCTATTACCTTCATCACGTTCACAAAGGCAGCCGCCACCGCAGAGCCAAAGG
rJMSF018I05+ TGATTACCGCTATTACCTTCATCACGTTCACAAAGGCAGCCGCCACCGCAGAGCCAAAGG
rJMSF018H05+ TGATTACCGCTATTACCTTCATCACGTTCACAAAGGCAGCCGCCACCGCAGAGCCAAAGG
                      ____________________________________________________________
consensus TGATTACCGCTATTACCTTCATCACGTTCACAAAGGCAGCCGCCACCGCAGAGCCAAAGG
 
. : . : . : . : . : . :
rJMSF039B09+ TGGTTCATCAGGGATCAAGAAGCAAGTTCACCCAAGACAACACCACAACAAAGGTGCTGT
rJMSF018I05+ TGGTTCATCAGGGATCAAGAAGCAAGTTCACCCAAGACAACACCACAACAAAGGTGCTGT
rJMSF018H05+ TGGTTCATCAGGGATCAAGAAGCAAGTTCACCCAAGACAACACCACAACAAAGGTGCTGT
                      ____________________________________________________________
consensus TGGTTCATCAGGGATCAAGAAGCAAGTTCACCCAAGACAACACCACAACAAAGGTGCTGT
 
. : . : . : . : . : . :
rJMSF039B09+ TGCTAGCTCATCATACACATTCATCTCTCAGGTATGATGAGAGGAGGAAAAATTTGGATG
rJMSF018I05+ TGCTAGCTCATCATACACATTCATCTCTCAGGTATGATGAGAGGAGGAAAAATTTGGATG
rJMSF018H05+ TGCTAGCTCATCATACACATTCATCTCTCAGGTATGATGAGAGGAGGAAAAATTTGGATG
                      ____________________________________________________________
consensus TGCTAGCTCATCATACACATTCATCTCTCAGGTATGATGAGAGGAGGAAAAATTTGGATG
 
. : . : . : . : . : . :
rJMSF039B09+ AATTCTTAGGAAAATTTATAGAGAAATTAATATTCATAGTTTATAGTTTATGTACATATG
rJMSF018I05+ AATTCTTAGGAAAATTTATAGAGAAATTAATATTCATAGTTTATAGTTTATGTACATATG
rJMSF018H05+ AATTCTTAGGAAAATTTATAGAGAAATTAATATTCATAGTTTATAGTTTATGTACATATG
                      ____________________________________________________________
consensus AATTCTTAGGAAAATTTATAGAGAAATTAATATTCATAGTTTATAGTTTATGTACATATG
 
. : . : . : . : . : . :
rJMSF039B09+ ATCTAACGTTTGTGTGATTATTTGGAGT
rJMSF018I05+ ATCTAACGTTTGTGTGATTATTTGGAGTTGTTAAGTTTATAAATAATCACATCTAATGT
rJMSF018H05+ ATCTAACGTTNGTGTGATTATTTGGAGTTGTTAAGTTTATAAATAATCACATCTAATGTT
                      ____________________________________________________________
consensus ATCTAACGTTTGTGTGATTATTTGGAGTTGTTAAGTTTATAAATAATCACATCTAATGTT