Contig 007084:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018A20Sequence241007084 (2)ref|XP_011074919.1|3e-17PREDICTED: transmembrane protein 18 [Sesamum indicum]808007084 (2)ref|XP_004245243.1|6e-92PREDICTED: transmembrane protein 18 [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF018A20-                  GGGAAATAACCGAAAAATATAAGAGCAGTAGTTCCTTCTGGAAGTAGTGCAGA
rJMSF018A20+                                                         GAAGTAGTGCNGG
                      ____________________________________________________________
consensus                    GGGAAATAACCGAAAAATATAAGAGCAGTAGTTCCTTCTGGAAGTAGTGCAGG
 
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JMSF018A20-           AAGAAGGAAAAACCAAAAACCCTTTACCTCTCATACTTGAATCAGATCAAGAAAACGCCA
rJMSF018A20+          AAGAAGGAAAAACCAAAAACCCTTTACCTCTCATACCTGAATCAGATCAAGAAAACGCCA
                      ____________________________________________________________
consensus             AAGAAGGAAAAACCAAAAACCCTTTACCTCTCATACTTGAATCAGATCAAGAAAACGCCA
 
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JMSF018A20-           TGGATGAGCTAACCTCTGCCCTCAATGCCCACATGGACCAAATGGCGGATCTCGTTGAGA
rJMSF018A20+          TGGATGAGCTAACCTCTGCCCTCAATGCCCACATGGACCAAATGGCGGATCTCGTTGAGA
                      ____________________________________________________________
consensus             TGGATGAGCTAACCTCTGCCCTCAATGCCCACATGGACCAAATGGCGGATCTCGTTGAGA
 
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JMSF018A20-           AAATGTCTGCCGAGCTTCGCTCCGGACTCAAACCCGCCTACGACAATTTCATCGGCTTTT
rJMSF018A20+          AAATGTCTGCCGAGCTTCGCTCCGGACTCAAACCCGCCTACGACAATTTCATCGGCTTTT
                      ____________________________________________________________
consensus             AAATGTCTGCCGAGCTTCGCTCCGGACTCAAACCCGCCTACGACAATTTCATCGGCTTTT
 
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JMSF018A20-           TCCACGCC                                                    
rJMSF018A20+          TCCACGCCATTGACTGGACGGAACCTTGGTTGGTAGGGTTAATTTCCTTCCATGTTGTAT
                      ____________________________________________________________
consensus             TCCACGCCATTGACTGGACGGAACCTTGGTTGGTAGGGTTAATTTCCTTCCATGTTGTAT
 
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rJMSF018A20+          TGCTGCTACTAGCAGTCTTCTTGAGAAAGAACATCAATTCTCAGATGTTCTTATTCCTTC
                      ____________________________________________________________
consensus             TGCTGCTACTAGCAGTCTTCTTGAGAAAGAACATCAATTCTCAGATGTTCTTATTCCTTC
 
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rJMSF018A20+          TTGCATTAGGAGGAGTTTACTTTGCAGAGAATCTTAACAAAATATTGGCTGCCAATTGGA
                      ____________________________________________________________
consensus             TTGCATTAGGAGGAGTTTACTTTGCAGAGAATCTTAACAAAATATTGGCTGCCAATTGGA
 
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rJMSF018A20+          AAAGCTTTGCACGGCAGAATTATTTTGACGCACATGGCCTCTTTCTTTCAGTGCTCTGGT
                      ____________________________________________________________
consensus             AAAGCTTTGCACGGCAGAATTATTTTGACGCACATGGCCTCTTTCTTTCAGTGCTCTGGT
 
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rJMSF018A20+          CTGGACCTCTTTTGGTCATTTCAATCATAATCTTGGTGAATACGCTATTTTCCATGTGCT
                      ____________________________________________________________
consensus             CTGGACCTCTTTTGGTCATTTCAATCATAATCTTGGTGAATACGCTATTTTCCATGTGCT
 
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rJMSF018A20+          ACTTGATCGTTAGGTGGAAAAAGGCCGAGCTTAGACACCGTGCAAGACTAGCTCGTAACA
                      ____________________________________________________________
consensus             ACTTGATCGTTAGGTGGAAAAAGGCCGAGCTTAGACACCGTGCAAGACTAGCTCGTAACA
 
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rJMSF018A20+          AGGAGGACTGAGACAACTCATTTGATATTGTATTTTATGATAGTTCACTCATCTTTTCCA
                      ____________________________________________________________
consensus             AGGAGGACTGAGACAACTCATTTGATATTGTATTTTATGATAGTTCACTCATCTTTTCCA
 
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rJMSF018A20+          TATTGTAATTGCCTTTTTGGTTATAACTATCAGCATATTCTTCAAAGACATGGAAAAATG
                      ____________________________________________________________
consensus             TATTGTAATTGCCTTTTTGGTTATAACTATCAGCATATTCTTCAAAGACATGGAAAAATG
 
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rJMSF018A20+          AAAAGAATTGTATTGAGTAGCTTAGTGTATACTTTTACGGTATGCTGATAGCTTCAATTG
                      ____________________________________________________________
consensus             AAAAGAATTGTATTGAGTAGCTTAGTGTATACTTTTACGGTATGCTGATAGCTTCAATTG
 
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rJMSF018A20+          TGAGGGAAAAAGATATGTTTGGTCAACCAGAGAGCTTTTTGCTAAAGTTGTCATCTGCTG
                      ____________________________________________________________
consensus             TGAGGGAAAAAGATATGTTTGGTCAACCAGAGAGCTTTTTGCTAAAGTTGTCATCTGCTG