| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS163D01 | Sequence | 476 | 007081 (5) | ref|XP_009778031.1| | 4e-46 | PREDICTED: embryogenesis-associated protein EMB8-like isoform X1 [Nicotiana syl | |||||
| JMSF008I02 | Sequence | 392 | 009211 (4) | ref|XP_009778031.1| | 1e-28 | PREDICTED: embryogenesis-associated protein EMB8-like isoform X1 [Nicotiana syl | 780 | 007081 (5) | ref|XP_009778031.1| | 8e-68 | PREDICTED: embryogenesis-associated protein EMB8-like isoform X1 [Nicotiana syl |
| JMSF017F07 | Sequence | 276 | 009211 (4) | ref|XP_009599882.1| | 3e-07 | PREDICTED: embryogenesis-associated protein EMB8-like [Nicotiana tomentosiformi | 782 | 007081 (5) | ref|XP_009778031.1| | 2e-52 | PREDICTED: embryogenesis-associated protein EMB8-like isoform X1 [Nicotiana syl |
| JMSF025E23 | Sequence | 686 | 009211 (4) | ref|XP_009778031.1| | 2e-93 | PREDICTED: embryogenesis-associated protein EMB8-like isoform X1 [Nicotiana syl | 747 | 007081 (5) | ref|XP_009778031.1| | 5e-46 | PREDICTED: embryogenesis-associated protein EMB8-like isoform X1 [Nicotiana syl |
| JMSF031M23 | Sequence | 631 | 009211 (4) | ref|XP_009778032.1| | 2e-70 | PREDICTED: embryogenesis-associated protein EMB8-like isoform X2 [Nicotiana syl | 631 | 007081 (5) | ref|XP_009778031.1| | 2e-30 | PREDICTED: embryogenesis-associated protein EMB8-like isoform X1 [Nicotiana syl |
This contig is upended
. : . : . : . : . : . :
rJMSF008I02+ GA
____________________________________________________________
consensus GA
. : . : . : . : . : . :
rJMSF008I02+ AACGTTATGATTCCCCTTCTCTGCATTAGTGCTTTGGACGATCCAGTCTGCACAAGGGAA
____________________________________________________________
consensus AACGTTATGATTCCCCTTCTCTGCATTAGTGCTTTGGACGATCCAGTCTGCACAAGGGAA
. : . : . : . : . : . :
JMFS163D01- GGGCAAATAAGAACATTGTTTTAGCTACTACAGAGCAC
rJMSF008I02+ GCAATTCCATGGGATGAGTGCCGGGCAAATAAGAACATTGTTTTAGCTACTACAGAGCAC
rJMSF025E23+ GGGCAAATAAGAACATTGTTTTAGCTACTACAGAGCAC
rJMSF017F07+ GGGCAAATAAGAACATTGTTTTAGCTACTACAGAGCAC
____________________________________________________________
consensus GCAATTCCATGGGATGAGTGCCGGGCAAATAAGAACATTGTTTTAGCTACTACAGAGCAC
. : . : . : . : . : . :
JMFS163D01- GGGGGACACTTGGCATATTTTGAAGGTCTCACTGCCAAAAGTGTTTGGTGGGTAAGAGCA
rJMSF008I02+ GGGGGACACTTGGCATATTTTGAAGGTCTCACTGCCAAAAGTGTTTGGTGGGTAAGAGCA
rJMSF025E23+ GGGGGACACTTGGCATATTTTGAAGGTCTCACTGCCAAAAGTGTTTGGTGGGTAAGAGCA
rJMSF031M23+ CTCACTGCCAAAAGTGTTTGGTGGGTAAGAGCA
rJMSF017F07+ GGGGGACACTTGGCATATTTTGAAGGTCTCACTGCCAAAAGTGTTTGGTGGGTAAGAGCA
____________________________________________________________
consensus GGGGGACACTTGGCATATTTTGAAGGTCTCACTGCCAAAAGTGTTTGGTGGGTAAGAGCA
. : . : . : . : . : . :
JMFS163D01- GTTGATGAATTCTTCAGAGTTTTGAGCTCTAGCCCTTTGATCAAGGAAAGAGCCATGCAA
rJMSF008I02+ GTTGATGAATTCTTCAGAGTTTTGAGCTCTAGCCCTTTGATCAAGGAAAGAGCCATGCAA
rJMSF025E23+ GTTGATGAATTCTTCAGAGTTTTGAGCTCTAGCCCTTTGATCAAGGAAAGAGCCATGCAA
rJMSF031M23+ GTTGATGAATTCTTCAGAGTTTTGAGCTCTAGCCCTTTGATCAAGGAAAGAGCCATGCAA
rJMSF017F07+ GTTGATGAATTCTTCAGAGTTTTGAGCTCTAGCCCTTTGATCAAGGAAAGAGCCATGCAA
____________________________________________________________
consensus GTTGATGAATTCTTCAGAGTTTTGAGCTCTAGCCCTTTGATCAAGGAAAGAGCCATGCAA
. : . : . : . : . : . :
JMFS163D01- GATACTGCCAAGACCAACCCAATTGAATCTTCAATTGATCAAGCTCCATACGTGAGCGTG
rJMSF008I02+ GATACTGCCAAGACCAACCCAATTGAATCTTCAATTGATCAAGCTCCATACGTGAGCGTG
rJMSF025E23+ GATACTGCCAAGACCAACCCAATTGAATCTTCAATTGATCAAGCTCCATACGTGAGCGTG
rJMSF031M23+ GATACTGCCAAGACCAACCCAATTGAATCTTCAATTGATCAAGCTCCATACGTGAGCGTG
rJMSF017F07+ GATACTGCCAAGACCAACCCAATTGAATCTTCAATTGATCAAGCTCCATACGTGAGCGTG
____________________________________________________________
consensus GATACTGCCAAGACCAACCCAATTGAATCTTCAATTGATCAAGCTCCATACGTGAGCGTG
. : . : . : . : . : . :
JMFS163D01- ATGGATGATGGAATGGTGAGTGCTGTTACTAATGAGCCGCCACCGAGTGATATAGGATGC
rJMSF008I02+ ATGGATGATGGAATGGTGAGTGCTGTTACTAATGAGCCGCCACCGAGTGATATAGGATGC
rJMSF025E23+ ATGGATGATGGAATGGTGAGTGCTGTTACTAATGAGCCGCCACCGAGTGATATAGGATGC
rJMSF031M23+ ATGGATGATGGAATGGTGAGTGCTGTTACTAATGAGCCGCCACCGAGTGATATAGGATGC
rJMSF017F07+ ATGGATGATGGAATGGTGAGTGCTGTTACTAATGAGCCGCCACCGAGTGATATAGGATGC
____________________________________________________________
consensus ATGGATGATGGAATGGTGAGTGCTGTTACTAATGAGCCGCCACCGAGTGATATAGGATGC
. : . : . : . : . : . :
JMFS163D01- TGCGAGCTGTCCGAGCACACGGTTGCAAAAGACAAAGCTGGAGATGGTTCTTCAGCTTCA
rJMSF008I02+ TGCGAGCTGTCCGAGCACACGGTTGCAAAAGACAAAGCTGGAGATGGTTCTTCAGCTTCA
rJMSF025E23+ TGCGAGCTGTCCGAGCACACGGTTGCAAAAGACAAAGCTGGAGATGGTTCTTCAGCTTCA
rJMSF031M23+ TGCGAGCTGTCCGAGCACACGGTTGCAAAAGACAAAGCTGGAGATGGTTCTTCAGCTTCA
rJMSF017F07+ TGCGAGCTGTCCGAGCACACGGTTGCAAAAGACAAAGCTGGAGATGGTTCTTCAGCTTCA
____________________________________________________________
consensus TGCGAGCTGTCCGAGCACACGGTTGCAAAAGACAAAGCTGGAGATGGTTCTTCAGCTTCA
. : . : . : . : . : . :
JMFS163D01- GCTGCAGAACGTAATGGTGTAATTACGCCCCAAGAGGCAAATGCGGGGACTGCTGAGATT
rJMSF008I02+ GCTGCAGAACGTAATGGTGTAATTACGCCCCAAGAGGCAAATGCGGGGACTGCTGAGATT
rJMSF025E23+ GCTGCAGAACGTAATGGGGTAATTACGCCCCAAGAGGCAAATGCGGGGACTGCTGAGATT
rJMSF031M23+ GCTGCAGAACGTAATGGTGTAATTACGCCCCAAGAGGCAAATGCGGGGACTGCTGAGATT
rJMSF017F07+ GCTGCAGAACGTAATGGTGTAATTACGCCCCAAGAGGCAAATGCGGGGACTGCTGAGATT
____________________________________________________________
consensus GCTGCAGAACGTAATGGTGTAATTACGCCCCAAGAGGCAAATGCGGGGACTGCTGAGATT
. : . : . : . : . : . :
JMFS163D01- GTCGAAGACGCTGCATTGCCTCCCGTTAGGAAA
rJMSF008I02+ GTCGAAGACGCTGCATTGCCTCCCGTTAGGAAATGCTTAAATCAGCTTTCAAGGCGAAGT
rJMSF025E23+ GTCGAAGACGCTGCATTGCCTCCCGTTAGGAAATGCTTAAATCAGCTTTCAAGGCGAAGT
rJMSF031M23+ GTCGAAGACGCTGCATTGCCTCCCGTTAGGAAATGCTTAAATCAGCTTTCAAGGCGAAGT
rJMSF017F07+ GTCGAAGACGCTGCATTGCCTCCCGTTAGGAAATGCTTAAATCAGCTTTCAAGGCGAAGT
____________________________________________________________
consensus GTCGAAGACGCTGCATTGCCTCCCGTTAGGAAATGCTTAAATCAGCTTTCAAGGCGAAGT
. : . : . : . : . : . :
rJMSF008I02+ AAAGCGTCAATATGGCTTCTTGCCTATGTTGCAATCCTTACAACTTTGCCAATTCTGGGC
rJMSF025E23+ AAAGCGTCAATATGGCTTCTTGCCTATGTTGCAATCCTTACAACTTTGCCAATTCTGGGC
rJMSF031M23+ AAAGCGTCAATATGGCTTCTTGCCTATGTTGCAATCCTTACAACTTTGCCAATTCTGGGC
rJMSF017F07+ AAAGCGTCAATATGGCTTCTTGCCTATGTTGCAATCCTTACAACTTTGCCAATTCTGGGC
____________________________________________________________
consensus AAAGCGTCAATATGGCTTCTTGCCTATGTTGCAATCCTTACAACTTTGCCAATTCTGGGC
. : . : . : . : . : . :
rJMSF008I02+ TCTGCACTACCACTGCTGCTCAAGAAAAGGTTAAGAAACATCTTTTCAGGATTGTTACAG
rJMSF025E23+ TCTGCACTACCACTGCTGCTCAAGAAAAGGTTAAGAAACATCTTTTCAGGATTGTTACAG
rJMSF031M23+ TCTGCACTACCACTGCTGCTCAAGAAAAGGTTAAGAAACATCTTTTCAGGATTGTTACAG
rJMSF017F07+ TCTGCACTACCACTGCTGCTCAAGAAAAGGTTAAGAAACATCTTTTCAGGATTGTTACAG
____________________________________________________________
consensus TCTGCACTACCACTGCTGCTCAAGAAAAGGTTAAGAAACATCTTTTCAGGATTGTTACAG
. : . : . : . : . : . :
rJMSF008I02+ AGAAAATAATTTATCCTGGCCACAGGAGAGAAGATAGCGCTGGCTCATAAGAGAGAGCCT
rJMSF025E23+ AGAAAATAATTTATCCTGGCCACAGGAGAGAAGATAGCGCTGGCTCATAAGAGAGAGCCT
rJMSF031M23+ AGAAAATAATTTATCCTGGCCACAGGAGAGAAGATAGCGCTGGCTCATAAGAGAGAGCCT
rJMSF017F07+ AGAAAATAATTTATCCTGGCCACAGGAGAGAAGATAGCGCTGGCTCATAAGAGAGAGCCT
____________________________________________________________
consensus AGAAAATAATTTATCCTGGCCACAGGAGAGAAGATAGCGCTGGCTCATAAGAGAGAGCCT
. : . : . : . : . : . :
rJMSF008I02+ CTCTATACCTTTCTGTTGTACTAATTATAATAATCTATAAAATTCAGCAAATCTATTT
rJMSF025E23+ CTCTATACCTTTCTGTTGTACTAATTATAATAATCTATAAAATTCAGCAAATCTATTT
rJMSF031M23+ CTCTATACCTTTCTGTTGTACTAATTATAATAATCTATAAAATTCAGCAAATCTATTT
rJMSF017F07+ CTCTATACCTTTCTGTTGTACTAATTATAATAATCTATAAAATTCAGCAAATCTATTTTG
____________________________________________________________
consensus CTCTATACCTTTCTGTTGTACTAATTATAATAATCTATAAAATTCAGCAAATCTATTTTG
. : . : . : . : . : . :
rJMSF017F07+ TTGATGCACATTTGCAATAAGAAAAACTAAATTCTTTTACTCAATGATATAGCAAAATTG
____________________________________________________________
consensus TTGATGCACATTTGCAATAAGAAAAACTAAATTCTTTTACTCAATGATATAGCAAAATTG