Contig 007079:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016I14Sequence552005300 (4)ref|XP_009761121.1|2e-55PREDICTED: transducin beta-like protein 2 [Nicotiana sylvestris]795007079 (3)ref|XP_009761121.1|2e-55PREDICTED: transducin beta-like protein 2 [Nicotiana sylvestris]
JMSF037P22Sequence708005300 (4)ref|XP_009761121.1|1e-73PREDICTED: transducin beta-like protein 2 [Nicotiana sylvestris]665007079 (3)ref|XP_009761121.1|3e-70PREDICTED: transducin beta-like protein 2 [Nicotiana sylvestris]
JMSF049C15Sequence672005300 (4)ref|XP_006396207.1|7e-27hypothetical protein EUTSA_v10028676mg [Eutrema salsugineum] gb|ESQ37660.1| hypo762007079 (3)ref|XP_011090700.1|7e-94PREDICTED: transducin beta-like protein 2 [Sesamum indicum]

Alignment

This contig is upended


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rJMSF049C15+                                                           TCTGGGAAATT
                      ____________________________________________________________
consensus                                                              TCTGGGAAATT
 
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rJMSF049C15+          GTGTACTCAAAAGATGGTTCAGTGAAGGAAGTGTTGAGAGTTATGCAGCTCAAGGGGCAC
                      ____________________________________________________________
consensus             GTGTACTCAAAAGATGGTTCAGTGAAGGAAGTGTTGAGAGTTATGCAGCTCAAGGGGCAC
 
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rJMSF049C15+          AAGAGTGCAGTGACTTGGCTCTGCTTTACTCCAAATTCAGAACAAATAATTACTGCATCC
rJMSF037P22+                                        CCAAATTCAGAACAAATAATTACTGCATCC
rJMSF016I14+                                                      AATAATTACTGCATCC
                      ____________________________________________________________
consensus             AAGAGTGCAGTGACTTGGCTCTGCTTTACTCCAAATTCAGAACAAATAATTACTGCATCC
 
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rJMSF049C15+          AAGGATGGTTCTATTAGAGTGT-GGAATATCAATGTGCGTTATCATCTTGATGAGGACCC
rJMSF037P22+          AAGGATGGTTCTATTAGAGTGT-GGAATATCAATGTGCGTTATCATCTTGATGAGGACCC
rJMSF016I14+          AAGGATGGTTCTATTAGAGTGTGGGAATATCAATGTGCGTTATCATCTTGATGAGGACCC
                      ____________________________________________________________
consensus             AAGGATGGTTCTATTAGAGTGT-GGAATATCAATGTGCGTTATCATCTTGATGAGGACCC
 
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rJMSF049C15+          CAAAACTTTGAAAGTGTTTCCTATTCCACTTCATGATGCAAACGGCGCGACTTTACACTA
rJMSF037P22+          CAAAACTTTGAAAGTGTTTCCTATTCCACTTCATGATGCAAACGGCGCGACTTTACACTA
rJMSF016I14+          CAAAACTTTGAAAGTGTTTCCTATTCCACTTCATGATGCAAACGGCGCGACTTTACACTA
                      ____________________________________________________________
consensus             CAAAACTTTGAAAGTGTTTCCTATTCCACTTCATGATGCAAACGGCGCGACTTTACACTA
 
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rJMSF049C15+          TGACCGCATGTGCCTTTCACCTGACGGTAAGATATTGGCAGCTACTCATGGTTCAACATT
rJMSF037P22+          TGACCGCATGTGCCTTTCACCTGACGGTAAGATATTGGCAGCTACTCATGGTTCAACATT
rJMSF016I14+          TGACCGCATGTGCCTTTCACCTGACGGTAAGATATTGGCAGCTACTCATGGTTCAACATT
                      ____________________________________________________________
consensus             TGACCGCATGTGCCTTTCACCTGACGGTAAGATATTGGCAGCTACTCATGGTTCAACATT
 
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rJMSF049C15+          GCAATGGTTACATGCTGAGACAGGGAAGGTTTTGGATACAGCTGAGAAACCCCATGATGG
rJMSF037P22+          GCAATGGTTACATGCTGAGACAGGGAAGGTTTTGGATACAGCTGAGAAACCCCATGATGG
rJMSF016I14+          GCAATGGTTACATGCTGAGACAGGGAAGGTTTTGGATACAGCTGAGAAACCCCATGATGG
                      ____________________________________________________________
consensus             GCAATGGTTACATGCTGAGACAGGGAAGGTTTTGGATACAGCTGAGAAACCCCATGATGG
 
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rJMSF049C15+          TAACATCACAGACATGGCTTGGTCACCTCGCACCATCCCTTCAGGAGACAAGCAAGTTTT
rJMSF037P22+          TAACATCACAGACATGGCTTGGTCACCTCGCACCATCCCTTCAGGAGACAAGCAAGTTTT
rJMSF016I14+          TAACATCACAGACATGGCTTGGTCACCTCGCACCATCCCTTCAGGAGACAAGCAAGTTTT
                      ____________________________________________________________
consensus             TAACATCACAGACATGGCTTGGTCACCTCGCACCATCCCTTCAGGAGACAAGCAAGTTTT
 
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rJMSF049C15+          TGTTTTAGCCACATCGAGCGATGACAAGAAAGTGAAACTTTGGGCTGCACCATCACTACA
rJMSF037P22+          TGTTTTAGCCACATCGAGCGATGACAAGAAAGTGAAACTTTGGGCTGCACCATCACTACA
rJMSF016I14+          TGTTTTAGCCACATCGAGCGATGACAAGAAAGTGAAACTTTGGGCTGCACCATCACTACA
                      ____________________________________________________________
consensus             TGTTTTAGCCACATCGAGCGATGACAAGAAAGTGAAACTTTGGGCTGCACCATCACTACA
 
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rJMSF049C15+          AACTTAAAAAAACCACAGGTGCATCCCAGCTAATCATGACGCAGAAGCTTCAAGTTTTCT
rJMSF037P22+          AACTT-AAAAAACCACAGGTGCATCCCAGCTAATCATGACGCAGAAGCTTCAAGTTTTCT
rJMSF016I14+          AACTT-AAAAAACCACAGGTGCATCCCAGCTAATCATGACGCAGAAGCTTCAAGTTTTCT
                      ____________________________________________________________
consensus             AACTT-AAAAAACCACAGGTGCATCCCAGCTAATCATGACGCAGAAGCTTCAAGTTTTCT
 
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rJMSF049C15+          GGTACTGACCTCTATACAAATGCAACCTCTGACCACTAAACCGGTGAATGCAAGTTGAGA
rJMSF037P22+          GGTACTGACCTCTATACAAATGCAACCTCTGACCACTAAACCGGTGAATGCAAGTTGAGA
rJMSF016I14+          GGTACTGACCTCTATACAAATGCAACCTCTGACCACTAAACCGGTGAATGCAAGTTGAGA
                      ____________________________________________________________
consensus             GGTACTGACCTCTATACAAATGCAACCTCTGACCACTAAACCGGTGAATGCAAGTTGAGA
 
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rJMSF049C15+          GAGCAGTTCATAGGCTGAGAAGTTGAGTCTAGCACAAATTGGCTTCTTTATTTGCAGGCT
rJMSF037P22+          GAGCAGTTCATAGGCTGAGAAGTTGAGTCTAGCACAAATTGGCTTCTTTATTTGCAGGCT
rJMSF016I14+          GAGCAGTTCATAGGCTGAGAAGTTGAGTCTAGCACAAATTGGCTTCTTTATTTGCAGGCT
                      ____________________________________________________________
consensus             GAGCAGTTCATAGGCTGAGAAGTTGAGTCTAGCACAAATTGGCTTCTTTATTTGCAGGCT
 
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rJMSF049C15+          ATCTTTCCTTTATATTGCAGATGAGAGTATGGTATTCAAAAATTTTGTATGCAAAGATGT
rJMSF037P22+          ATCTTTCCTTTATATTGCAGATGAGAGTATGGTATTCAAAAATTTTGTATGCAAAGATGT
rJMSF016I14+          ATCTTTCCTTTATATTGCAGATGAGAGTATGGTATTCAAAAATTTTGTATGCAAAGATGT
                      ____________________________________________________________
consensus             ATCTTTCCTTTATATTGCAGATGAGAGTATGGTATTCAAAAATTTTGTATGCAAAGATGT
 
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rJMSF049C15+          TATGATGAGTGGTTCTTGGTTTGCTGT                                 
rJMSF037P22+          TATGATGAGTGGTTCTTGGTTTGCTGT                                 
rJMSF016I14+          TATGATGAGTGGTTCTTGGTTTGCTGTTGAAGTTTAGTTGGTGCCAATGATACTGCAGAA
                      ____________________________________________________________
consensus             TATGATGAGTGGTTCTTGGTTTGCTGTTGAAGTTTAGTTGGTGCCAATGATACTGCAGAA
 
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rJMSF016I14+          GTTCAGTTTATTATATTAAATTGTTCACCTTAAATCAGTGTTTTCCGCAATTAATTTTCA
                      ____________________________________________________________
consensus             GTTCAGTTTATTATATTAAATTGTTCACCTTAAATCAGTGTTTTCCGCAATTAATTTTCA
 
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rJMSF016I14+          CCATAAAACATATACTCTTTATCATAGACTAATCTGAATTCAGTACGTAGTGGAGTGTTG
                      ____________________________________________________________
consensus             CCATAAAACATATACTCTTTATCATAGACTAATCTGAATTCAGTACGTAGTGGAGTGTTG