Contig 007078:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016H15Sequence521007078 (2)ref|XP_006338087.1|1e-87PREDICTED: protein CutA, chloroplastic-like isoform X1 [Solanum tuberosum]648007078 (2)ref|XP_006338087.1|2e-100PREDICTED: protein CutA, chloroplastic-like isoform X1 [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF016H15-                      AAGGCAGAAAATAGCATTACAGGAAGTAAATTTGTACAATGACTGAAA
                      ____________________________________________________________
consensus                         AAGGCAGAAAATAGCATTACAGGAAGTAAATTTGTACAATGACTGAAA
 
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rJMSF016H15-          GACAATCTTATTTAAAGCAAAATCATTTCTCTCTTGTAGTGTTCTTGATCCATTCCAGGT
                      ____________________________________________________________
consensus             GACAATCTTATTTAAAGCAAAATCATTTCTCTCTTGTAGTGTTCTTGATCCATTCCAGGT
 
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JMSF016H15+                              TATGGGCAAGGCAATCACTTCAGGAACATCGTATTCATGGT
rJMSF016H15-          ACTGGGGGCTGCCACCAACTATGGGCAAGGCAATCACTTCAGGAACATCGTATTCATGGT
                      ____________________________________________________________
consensus             ACTGGGGGCTGCCACCAACTATGGGCAAGGCAATCACTTCAGGAACATCGTATTCATGGT
 
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JMSF016H15+           TGGCATTCACATGTGCGGTGAGAGCTTCCAAGAGAGATTCCCGAGTTTTGATAATAAGCA
rJMSF016H15-          TGGCATTCACATGTGCGGTGAGAGCTTCCAAGAGAGATTCCCGAGTTTTGATAATAAGCA
                      ____________________________________________________________
consensus             TGGCATTCACATGTGCGGTGAGAGCTTCCAAGAGAGATTCCCGAGTTTTGATAATAAGCA
 
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JMSF016H15+           GCTCTTCAGAATCGCTCTGTATCTTTCCATCCCATTCATAAACTGACTCGACGCCTGGAA
rJMSF016H15-          GCTCTTCAGAATCGCTCTGTATCTTTCCATCCCATTCATAAACTGACTCGACGCCTGGAA
                      ____________________________________________________________
consensus             GCTCTTCAGAATCGCTCTGTATCTTTCCATCCCATTCATAAACTGACTCGACGCCTGGAA
 
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JMSF016H15+           CTCGATTAACACATGCCGCAAGTTTTTCCTTGACTATGCTTTCAGCCAATTTCTTACCAG
rJMSF016H15-          CTCGATTAACACATGCCGCAAGTTTTTCCTTGACTATGCTTTCAGCCAATTTCTTACCAG
                      ____________________________________________________________
consensus             CTCGATTAACACATGCCGCAAGTTTTTCCTTGACTATGCTTTCAGCCAATTTCTTACCAG
 
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JMSF016H15+           CTTCTTTGTTAGGAACAGTGACATAGACTACGATACTGGGCACAGTCTTATCGCTAGCTT
rJMSF016H15-          CTTCTTTGTTAGGAACAGTGACATAGACTACGATACTGGGCACAGTCTTATCGCTAGCTT
                      ____________________________________________________________
consensus             CTTCTTTGTTAGGAACAGTGACATAGACTACGATACTGGGCACAGTCTTATCGCTAGCTT
 
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JMSF016H15+           CCATTCTCACACTATGAACACTTCTACTCTTTGATCTGAAGAGAGGGGCAAAGGGGAGGG
rJMSF016H15-          CCATTCTCACACTATGAACACTTCTACTCTTTGATCTGAAGAGAGGGGCAAAGGGGAGGG
                      ____________________________________________________________
consensus             CCATTCTCACACTATGAACACTTCTACTCTTTGATCTGAAGAGAGGGGCAAAGGGGAGGG
 
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JMSF016H15+           ATTGAGCACAACCCGTTTTGGAGAAAGGGACAGAGAGATTGGAGAGGCCGAAAGTTAGCA
rJMSF016H15-          ATTGAGCACAACCCGTTTTGGAGAAAGGGACAGAGAGATTGGAGAGGCCGAAAGTTAGCA
                      ____________________________________________________________
consensus             ATTGAGCACAACCCGTTTTGGAGAAAGGGACAGAGAGATTGGAGAGGCCGAAAGTTAGCA
 
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JMSF016H15+           CACAGAAGGCTCCGACTAGAGGCAAACGGCGACGTATGAGTGTCGATGAAGCTATGGCCG
rJMSF016H15-          CACAGAAGGCTCCGACTAGAGGCAAACGGCGACGTATGAGTGTCGATGAAGCTATGGCCG
                      ____________________________________________________________
consensus             CACAGAAGGCTCCGACTAGAGGCAAACGGCGACGTATGAGTGTCGATGAAGCTATGGCCG
 
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JMSF016H15+           AGAGTCGCAGTGCCATTTGGCGATGAAAATTGTTGTGGTTTTATAAGGTTTGATTTCTTC
rJMSF016H15-          AGAGTCGCAGTGCCATTTGGCGATGAAAATTGTTGTGGTTTTATAAGGTTTGATTTCTTC
                      ____________________________________________________________
consensus             AGAGTCGCAGTGCCATTTGGCGATGAAAATTGTTGTGGTTTTATAAGGTTTGATTTCTTC