Contig 007071:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014F07Sequence270009261 (5)738007071 (4)ref|XP_009625108.1|4e-13PREDICTED: casein kinase I-like isoform X2 [Nicotiana tomentosiformis]
JMSF014H09Sequence595009261 (5)ref|XP_002324433.1|1e-71casein kinase family protein [Populus trichocarpa] gb|EEF02998.1| casein kinase 737007071 (4)ref|XP_009625108.1|7e-13PREDICTED: casein kinase I-like isoform X2 [Nicotiana tomentosiformis]
JMSF020L16Sequence621009261 (5)ref|XP_002324433.1|5e-78casein kinase family protein [Populus trichocarpa] gb|EEF02998.1| casein kinase 426007071 (4)
JMSF052E24Sequence616009261 (5)ref|XP_002324433.1|5e-78casein kinase family protein [Populus trichocarpa] gb|EEF02998.1| casein kinase 875007071 (4)ref|XP_006353475.1|4e-32PREDICTED: casein kinase I isoform delta-like isoform X1 [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF052E24+                                                              CAGCAGGC
                      ____________________________________________________________
consensus                                                                 CAGCAGGC
 
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rJMSF052E24+          ACAAAGTAGTAGAACACAGCAACGGCCACTGCATGGAGAGAGCAGCCGAAGAGTTCCATT
                      ____________________________________________________________
consensus             ACAAAGTAGTAGAACACAGCAACGGCCACTGCATGGAGAGAGCAGCCGAAGAGTTCCATT
 
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rJMSF052E24+          GGATTCAGAAAAGCATCAAGTGGGAAACAATGCTCCTTATTCTGCTGAGTTGACAAAATC
                      ____________________________________________________________
consensus             GGATTCAGAAAAGCATCAAGTGGGAAACAATGCTCCTTATTCTGCTGAGTTGACAAAATC
 
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rJMSF052E24+          AAGCATTCCTACTAGTCCTGGTGCTCGTGCACAATTCAAGTTGTCAACAAATCGGAATTT
rJMSF014F07+                                          AATTCAAGTTGTCAACAAATCGGAATTT
rJMSF014H09+                                                    GTCAACAAATCGGAATTT
                      ____________________________________________________________
consensus             AAGCATTCCTACTAGTCCTGGTGCTCGTGCACAATTCAAGTTGTCAACAAATCGGAATTT
 
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rJMSF052E24+          GGCTTCTGGCAATCTTGAAACAGTTGACAGAAATATGCTGAGCAATGCATACATGGCATC
rJMSF014F07+          GGCTTCTGGCAATCTTGAAACAGCTGAGAGAAATATGCTGAGCAATGCATACATGGCATC
rJMSF014H09+          GGCTTCTGGCAATCTTGAAACAGTTGAGAGAAATATGCTGAGCAATGCATACATGGCATC
                      ____________________________________________________________
consensus             GGCTTCTGGCAATCTTGAAACAGTTGAGAGAAATATGCTGAGCAATGCATACATGGCATC
 
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rJMSF052E24+          TACATCATTGTCTCCAGCTGGTTTTGGAAGAGCAAGTGCAACTAAACCTACTTTACCTGC
rJMSF014F07+          TACATCATCGTCTCCAGCTGGTTTTGGAAGAGCAAGTGCAACTAAACCTACTTTACCTGC
rJMSF014H09+          TACATCATTGTCTCCAGCTGGTTTTGGAAGAGCAAGTGCAACTAAACCTACTTTACCTGC
                      ____________________________________________________________
consensus             TACATCATTGTCTCCAGCTGGTTTTGGAAGAGCAAGTGCAACTAAACCTACTTTACCTGC
 
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rJMSF052E24+          TGAAACGACCAATGCTGGTCATGTAAATGGTGATAATTCTGGTGCAGGCAGCTGGATTTC
rJMSF014F07+          TGAAACGACCAATGCTGGTCATGTAAATGGTGATAATTCTGGTGCAGGCAGCTGGATTTC
rJMSF014H09+          TGAAACGACCAATGCTGGTCATGTAAATGGTGATAATTCTGGTGCAGGCAGCTGGATTTC
                      ____________________________________________________________
consensus             TGAAACGACCAATGCTGGTCATGTAAATGGTGATAATTCTGGTGCAGGCAGCTGGATTTC
 
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rJMSF020L16+                                 CCAAGNGATAAGAGATGTTAAAGAATTGTTGCGTAAN
rJMSF052E24+          CTCTTTACGTCGCATTTCTTCTGCCAAGTGATAAGAGATGTTAAAGAATTGTTGCTTAAG
rJMSF014F07+          CTCTTTACGTCGCATTTCTTCTGCCAAGTGATAAGAGATGTTAAAGAATTGTTGCTTAAG
rJMSF014H09+          CTCTTTACGTCGCATTTCTTCTGCCAAGTGATAAGAGATGTTAAAGAATTGTTGCTTAAG
                      ____________________________________________________________
consensus             CTCTTTACGTCGCATTTCTTCTGCCAAGTGATAAGAGATGTTAAAGAATTGTTGCTTAAG
 
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rJMSF020L16+          TTGGGTGCAGNCTTGGTNTCAATTAGAATNGGACATGGAGNNATCAAAGGAAGNNTGATA
rJMSF052E24+          TTGGGTGCAGACTTGGTATCAATTAGAATAGGACATGGAGCTATCAAAGGAAGGTTGATA
rJMSF014F07+          TTGGGTGCAGACTTGGTATCAATTAGAATAGGACATGGAGCTATCAAAGGAAGGTTGATA
rJMSF014H09+          TTGGGTGCAGACTTGGTATCAATTAGAATAGGACATGGAGCTATCAAAGGAAGGTTGATA
                      ____________________________________________________________
consensus             TTGGGTGCAGACTTGGTATCAATTAGAATAGGACATGGAGCTATCAAAGGAAGGTTGATA
 
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rJMSF020L16+          ATNCCATATNGGTTCATGGCNGCNGTCCCAACAANCCGNGATGCATCAATNGNCAGCAAG
rJMSF052E24+          ATCCCATACTGGTTCATGGCTGCAGTCCCAACAACCCGAGATGCATCAATTGACAGCAAG
rJMSF014F07+          ATCCCATACTGGTTCATGGCTGCAGTCCCAACAACCCGAGATGCATCAATTGACAGCAAG
rJMSF014H09+          ATCCCATACTGGTTCATGGCTGCAGTCCCAACAACCCGAGATGCATCAATTGACAGCAAG
                      ____________________________________________________________
consensus             ATCCCATACTGGTTCATGGCTGCAGTCCCAACAACCCGAGATGCATCAATTGACAGCAAG
 
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rJMSF020L16+          CAAGGCCCGAGAGCACATTTNNCCANTCATNTNNTCAAGGCTCGGGTTAGNCTNTTTCCT
rJMSF052E24+          CAAGGCCCGAGAGCACATTTTGCCATTCATCTTGTCAAGGCTCGGGTTAGACTTTTTCCT
rJMSF014F07+          CAAGGCCCGAGAGCACATTTTGCCATTCATCTTGTCAAGGCTCGGGTTAGACTTTTTCCT
rJMSF014H09+          CAAGGCCCGAGAGCACATTTTGCCATTCATCTTGTCAAGGCTCGGGTTAGACTTTTTCCT
                      ____________________________________________________________
consensus             CAAGGCCCGAGAGCACATTTTGCCATTCATCTTGTCAAGGCTCGGGTTAGACTTTTTCCT
 
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rJMSF020L16+          AGATGNCTATAAACNAATTCACGNNNGNTNGCNGATCACAGAGCTTTGNTCCTGTGGTGT
rJMSF052E24+          AGATGACTATAAACAAATTCACGTTTGCTTGCAGATCACAGAGCTTTGTTCCTGTGGTGT
rJMSF014F07+          AGATGACTATAAACAAATTCACGTTTGCTTGCAGATCACAGAGCTTTGTTCCTGTGGTGT
rJMSF014H09+          AGATGACTATAAACAAATTCACGTTTGCTTGCAGATCACAGAGCTTTGTTCCTGTGGTGT
                      ____________________________________________________________
consensus             AGATGACTATAAACAAATTCACGTTTGCTTGCAGATCACAGAGCTTTGTTCCTGTGGTGT
 
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rJMSF020L16+          NGTGTACGTTGAAAGAATCAANTCCTGAAATTTNGGNTGCTTAGTTTGGTGTAAAATCAA
rJMSF052E24+          TGTGTACGTTGAAAGAATCAATTCCTGAAATTTAGGCTGCTTAGTTTGGTGTAAAATCAA
rJMSF014F07+          TGTGTACGTTGAAAGAATCAATTCCTGAAATTTAGGCTGCTTAGTTTGGTGTAAAATCAA
rJMSF014H09+          TGTGTACGTTGAAAGAATCAATTCCTGAAATTTAGGCTGCTTAGTTTGGTGTAAAATCAA
                      ____________________________________________________________
consensus             TGTGTACGTTGAAAGAATCAATTCCTGAAATTTAGGCTGCTTAGTTTGGTGTAAAATCAA
 
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rJMSF020L16+          TGATATGTTTTAAGTTTTTGTTCTTTGTCAGCAGATCGTAAGTTTCCTTNGNGCANATAG
rJMSF052E24+          TGATATGTTTTAAGTTTTTGTTCTTTGTCAGCAGATCGTAAGTTTCCTTTGTGCATATAG
rJMSF014F07+          TGATATGTTTTAAGTTTTTGTTCTTTGTCAGCAGATCGTAAGTTTCCTTTGTGCATATAG
rJMSF014H09+          TGATATGTTTTAAGTTTTTGTTCTTTGTCAGCAGATCGTAAGTTTCCTTTGTGCATATAG
                      ____________________________________________________________
consensus             TGATATGTTTTAAGTTTTTGTTCTTTGTCAGCAGATCGTAAGTTTCCTTTGTGCATATAG
 
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rJMSF020L16+          NGANGGTTGACNGGTNGTTTCTCTCA                                  
rJMSF052E24+          TGATGGTTGACTGGTTGTTTCTCTCACTCACATTTCTTCATCTGAGTTGCACATGTTGTA
rJMSF014F07+          TGATGGTTGACTGGTTGTTTCTCTCACTCACATNTCTTCATCTGAGTTGCACATGTTGTA
rJMSF014H09+          TGATGGTTGACTGGTTGTTTCTCTCACTCACATTTCTTCATCTGAGTTGCACATGTTGTA
                      ____________________________________________________________
consensus             TGATGGTTGACTGGTTGTTTCTCTCACTCACATTTCTTCATCTGAGTTGCACATGTTGTA
 
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rJMSF052E24+          AGT-GCTGTGTTGTTTTGTATTTTCTGC                                
rJMSF014F07+          AGTGGCTGTGTTGTTTTGTATTTTCTGCCATNCAAGCACCAT                  
rJMSF014H09+          AGT-GCTGTGTTGTTTTGTATTTTCTGCCATTCAAGCACCATTTGTATGAAAAGCACAAT
                      ____________________________________________________________
consensus             AGT-GCTGTGTTGTTTTGTATTTTCTGCCATTCAAGCACCATTTGTATGAAAAGCACAAT