| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN025I24 | Sequence | 625 | 007068 (8) | ref|XP_009787503.1| | 220 | PREDICTED: uncharacterized protein LOC104235440 [Nicotiana sylvestris] | |||||
| JMSF013C04 | Sequence | 325 | 007068 (8) | ref|XP_009787503.1| | 107 | PREDICTED: uncharacterized protein LOC104235440 [Nicotiana sylvestris] | 740 | 007068 (8) | ref|XP_009605353.1| | 166 | PREDICTED: uncharacterized protein LOC104099923 [Nicotiana tomentosiformis] |
| JMSF018C18 | Sequence | 441 | 008683 (3) | emb|CDP10970.1| | 3e-84 | unnamed protein product [Coffea canephora] | 731 | 007068 (8) | ref|XP_009605353.1| | 167 | PREDICTED: uncharacterized protein LOC104099923 [Nicotiana tomentosiformis] |
| JMSF039B02 | Sequence | 645 | 007068 (8) | ref|XP_009787503.1| | 220 | PREDICTED: uncharacterized protein LOC104235440 [Nicotiana sylvestris] | 820 | 007068 (8) | ref|XP_009605353.1| | 201 | PREDICTED: uncharacterized protein LOC104099923 [Nicotiana tomentosiformis] |
| JMSF040F17 | Sequence | 676 | 007068 (8) | ref|XP_009787503.1| | 220 | PREDICTED: uncharacterized protein LOC104235440 [Nicotiana sylvestris] | 822 | 007068 (8) | ref|XP_009605353.1| | 201 | PREDICTED: uncharacterized protein LOC104099923 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF039B02- GGCTCCAAC
____________________________________________________________
consensus GGCTCCAAC
. : . : . : . : . : . :
JMSF013C04- GAAATGCCATGGACAGTGCGGATTCTGACTTGATGGAGGCGGACTCCTCG
JMSF039B02- TCTGGTAACTGAAATGCCATGGACAGTGCGGATTCTGACTTGATGGAGGCGGACTCCTCG
JMFN025I24- ATGGACAGTGCGGATTCTGACTTGATGGAGGCGGACTCCTCG
JMSF040F17- GAAATGCCATGGACAGTGCGGATTCTGACTTGATGGAGGCGGACTCCTCG
____________________________________________________________
consensus TCTGGTAACTGAAATGCCATGGACAGTGCGGATTCTGACTTGATGGAGGCGGACTCCTCG
. : . : . : . : . : . :
JMSF013C04- TCGGCGCCGGCGCTTCCACCCGATCAGGACGACTTCGTCAGAGATTTGCTCACTATGGCT
JMSF039B02- TCGGCGCCGGCGCTTCCACCCGATCAGGACGACTTCGTCAGAGATTTGCTCACTATGGCT
JMFN025I24- TCGGCGCCGGCGCTTCCACCCGATCAGGACGACTTCGTCAGAGATTTGCTCACTATGGCT
JMSF040F17- TCGGCGCCGGCGCTTCCACCCGATCAGGACGACTTCGTCAGAGATTTGCTCACTATGGCT
rJMSF039B02+ TTCCACCCGATCAGGACGACTTCGTCAGAGATTTGCTCACTATGGCT
rJMSF040F17+ CTTCCACCCGATCAGGACGACTTCGTCAGAGATTTGCTCACTATGGCT
____________________________________________________________
consensus TCGGCGCCGGCGCTTCCACCCGATCAGGACGACTTCGTCAGAGATTTGCTCACTATGGCT
. : . : . : . : . : . :
JMSF013C04- CGCCAGCTTATCGATCAAAACATGCCTTCTCAGGCTCTCCAAGCGGTGGTGATGGCAATG
JMSF039B02- CGCCAGCTTATCGATCAAAACATGCCTTCTCAGGCTCTCCAAGCGGTGGTGATGGCAATG
JMFN025I24- CGCCAGCTTATCGATCAAAACATGCCTTCTCAGGCTCTCCAAGCGGTGGTGATGGCAATG
JMSF040F17- CGCCAGCTTATCGATCAAAACATGCCTTCTCAGGCTCTCCAAGCGGTGGTGATGGCAATG
rJMSF018C18+ AAGCGGTGGTGATGGCAATG
rJMSF039B02+ CGCCAGCTTATCGATCAAAACATGCCTTCTCAGGCTCTCCAAGCGGTGGTGATGGCAATG
rJMSF040F17+ CGCCAGCTTATCGATCAAAACATGCCTTCTCAGGCTCTCCAAGCGGTGGTGATGGCAATG
rJMSF013C04+ AAGCGGTGGTGATGGCAATG
____________________________________________________________
consensus CGCCAGCTTATCGATCAAAACATGCCTTCTCAGGCTCTCCAAGCGGTGGTGATGGCAATG
. : . : . : . : . : . :
JMSF013C04- AGAGCAAGAGATGGGGAGGGGGCTGTACATCAATTGCTTCATCGTGCTCGGGAGCTATAC
JMSF039B02- AGAGCAAGAGATGGGGAGGGGGCTGTACATCAATTGCTTCATCGTGCTCGGGAGCTATAC
JMFN025I24- AGAGCAAGAGATGGGGAGGGGGCTGTACATCAATTGCTTCATCGTGCTCGGGAGCTATAC
JMSF040F17- AGAGCAAGAGATGGGGAGGGGGCTGTACATCAATTGCTTCATCGTGCTCGGGAGCTATAC
rJMSF018C18+ AGAGCAAGAGATGGGGAGGGGGCTGTACATCAATNGCTTCATCGTGCTCGGGAGCTATAC
rJMSF039B02+ AGAGCAAGAGATGGGGAGGGGGCTGTACATCAATTGCTTCATCGTGCTCGGGAGCTATAC
rJMSF040F17+ AGAGCAAGAGATGGGGAGGGGGCTGTACATCAATTGCTTCATCGTGCTCGGGAGCTATAC
rJMSF013C04+ AGAGCAAGAGATGGGGAGGGGGCTGTACATCAATTGCTTCATCGTGCTCGGGAGCTATAC
____________________________________________________________
consensus AGAGCAAGAGATGGGGAGGGGGCTGTACATCAATTGCTTCATCGTGCTCGGGAGCTATAC
. : . : . : . : . : . :
JMSF013C04- AGTAACAAAGTGCAGGCAAGTGCAGCTGCAGATGAACTGGCTTCTTTGCTTGCTGAGTGT
JMSF039B02- AGTAACAAAGTGCAGGCAAGTGCAGCTGCAGATGAACTGGCTTCTTTGCTTGCTGAGTGT
JMFN025I24- AGTAACAAAGTGCAGGCAAGTGCAGCTGCAGATGAACTGGCTTCTTTGCTTGCTGAGTGT
JMSF040F17- AGTAACAAAGTGCAGGCAAGTGCAGCTGCAGATGAACTGGCTTCTTTGCTTGCTGAGTGT
rJMSF018C18+ AGTAACAAAGTGCAGGCAAGTGCAGCTGCAGATGAACTGGCTTCTTTGCTTGCTGAGTGT
rJMSF039B02+ AGTAACAAAGTGCAGGCAAGTGCAGCTGCAGATGAACTGGCTTCTTTGCTTGCTGAGTGT
rJMSF040F17+ AGTAACAAAGTGCAGGCAAGTGCAGCTGCAGATGAACTGGCTTCTTTGCTTGCTGAGTGT
rJMSF013C04+ AGTAACAAAGTGCAGGCAAGTGCAGCTGCAGATGAACTGGCTTCTTTGCTTGCTGAGTGT
____________________________________________________________
consensus AGTAACAAAGTGCAGGCAAGTGCAGCTGCAGATGAACTGGCTTCTTTGCTTGCTGAGTGT
. : . : . : . : . : . :
JMSF013C04- GCAATTGCCGAGGCCACGCCTCCCAACTCTGAGC
JMSF039B02- GCAATTGCCGAGGCCACGCCTCCCAACTCTGAGCCCAATGAACATAACACGGCAGATGAA
JMFN025I24- GCAATTGCCGAGGCCACGCCTCCCAACTCTGAGCCCAATGAACATAACACGGCAGATGAA
JMSF040F17- GCAATTGCCGAGGCCACGCCTCCCAACTCTGAGCCCAATGAACATAACACGGCAGATGAA
rJMSF018C18+ GCAATTGCCGAGGCCACGCCTCCCAACTCTGAGCCCAATGAACATAACACGGCAGATGAA
rJMSF039B02+ GCAATTGCCGAGGCCACGCCTCCCAACTCTGAGCCCAATGAACATAACACGGCAGATGAA
rJMSF040F17+ GCAATTGCCGAGGCCACGCCTCCCAACTCTGAGCCCAATGAACATAACACGGCAGATGAA
rJMSF013C04+ GCAATTGCCGAGGCCACGCCTCCCAACTCTGAGCCCAATGAACATAACACGGCAGATGAA
____________________________________________________________
consensus GCAATTGCCGAGGCCACGCCTCCCAACTCTGAGCCCAATGAACATAACACGGCAGATGAA
. : . : . : . : . : . :
JMSF039B02- TCTGTGGAACTAGAGAAGAGTGGGACTTCAATACTATCAGAGACTGGAAGGAAACAAGTT
JMFN025I24- TCTGTGGAACTAGAGAAGAGTGGGACTTCAATACTATCAGAGACTGGAAGGAAACAAGTT
JMSF040F17- TCTGTGGAACTAGAGAAGAGTGGGACTTCAATACTATCAGAGACTGGAAGGAAACAAGTT
rJMSF018C18+ TCTGTGGAACTAGAGAAGAGTGGGACTTCAATACTATCAGAGACTGGAAGGAAACAAGTT
rJMSF039B02+ TCTGTGGAACTAGAGAAGAGTGGGACTTCAATACTATCAGAGACTGGAAGGAAACAAGTT
rJMSF040F17+ TCTGTGGAACTAGAGAAGAGTGGGACTTCAATACTATCAGAGACTGGAAGGAAACAAGTT
rJMSF013C04+ TCTGTGGAACTAGAGAAGAGTGGGACTTCAATACTATCAGAGACTGGAAGGAAACAAGTT
____________________________________________________________
consensus TCTGTGGAACTAGAGAAGAGTGGGACTTCAATACTATCAGAGACTGGAAGGAAACAAGTT
. : . : . : . : . : . :
JMSF039B02- ATGTTGGATGCATTCTCTGATGGAAGCAGCTTTATCTGCTTTCAATGTGGGGGTCTGGTT
JMFN025I24- ATGTTGGATGCATTCTCTGATGGAAGCAGCTTTATCTGCTTTCAATGTGGGGGTCTGGTT
JMSF040F17- ATGTTGGATGCATTCTCTGATGGAAGCAGCTTTATCTGCTTTCAATGTGGGGGTCTGGTT
rJMSF018C18+ ATGTTGGATGCATTCTCTGATGGAAGCAGCTTTATCTGCTTTCAATGTGGGGGTCTGGTT
rJMSF039B02+ ATGTTGGATGCATTCTCTGATGGAAGCAGCTTTATCTGCTTTCAATGTGGGGGTCTGGTT
rJMSF040F17+ ATGTTGGATGCATTCTCTGATGGAAGCAGCTTTATCTGCTTTCAATGTGGGGGTCTGGTT
rJMSF013C04+ ATGTTGGATGCATTCTCTGATGGAAGCAGCTTTATCTGCTTTCAATGTGGGGGTCTGGTT
____________________________________________________________
consensus ATGTTGGATGCATTCTCTGATGGAAGCAGCTTTATCTGCTTTCAATGTGGGGGTCTGGTT
. : . : . : . : . : . :
JMSF039B02- AGCGCAAATAGGAGAGACGAGCACTACTCCTTCTGGTGTTGTAAAATGTGAATTCTCTCA
JMFN025I24- AGCGCAAATAGGAGAGACGAGCACTACTCCTTCTGGTGTTGTAAAATGTGAATTCTCTCA
JMSF040F17- AGCGCAAATAGGAGAGACGAGCACTACTCCTTCTGGTGTTGTAAAATGTGAATTCTCTCA
rJMSF018C18+ AGCGCAAATAGGAGAGACGAGCACTACTCCTTCTGGTGTTGTAAAATGTGAATTCTCTCA
rJMSF039B02+ AGCGCAAATAGGAGAGACGAGCACTACTCCTTCTGGTGTTGTAAAATGTGAATTCTCTCA
rJMSF040F17+ AGCGCAAATAGGAGAGACGAGCACTACTCCTTCTGGTGTTGTAAAATGTGAATTCTCTCA
rJMSF013C04+ AGCGCAAATAGGAGAGACGAGCACTACTCCTTCTGGTGTTGTAAAATGTGAATTCTCTCA
____________________________________________________________
consensus AGCGCAAATAGGAGAGACGAGCACTACTCCTTCTGGTGTTGTAAAATGTGAATTCTCTCA
. : . : . : . : . : . :
JMSF039B02- TTCTCGATTGGAAATGCACCATCTATCTAGTTAACTACTCCACTCTGTAACCATCACAGG
JMFN025I24- TTCTCGATTGGAAATGCACCATCTATCTAGTTAACTACTCCACTCTGTAACCATCACAGG
JMSF040F17- TTCTCGATTGGAAATGCACCATCTATCTAGTTAACTACTCCACTCTGTAACCATCACAGG
rJMSF018C18+ TTCTCGATTGGAAATGCACCATCTATCTAGTTAACTACTCCACTCTGTAACCATCACAGG
rJMSF039B02+ TTCTCGATTGGAAATGCACCATCTATCTAGTTAACTACTCCACTCTGTAACCATCACAGG
rJMSF040F17+ TTCTCGATTGGAAATGCACCATCTATCTAGTTAACTACTCCACTCTGTAACCATCACAGG
rJMSF013C04+ TTCTCGATTGGAAATGCACCATCTATCTAGTTAACTACTCCACTCTGTAACCATCACAGG
____________________________________________________________
consensus TTCTCGATTGGAAATGCACCATCTATCTAGTTAACTACTCCACTCTGTAACCATCACAGG
. : . : . : . : . : . :
JMSF039B02- TGGTTCATTGATGGTGCTCCTAAGTCCTACCCCATT
JMFN025I24- TGGTTCATTGATGGTGCTCCTAAGTCCTACCCCATTCAACTTC
JMSF040F17- TGGTTCATTGATGGTGCTCCTAAGTCCTACCCCATTCAACTTCGAAGTGCAACAAATTTT
rJMSF018C18+ TGGTTCATTGATGGTGCTCCTAAGTCCTACCCCATTCAACTTCGAAGTGCAACAAATTTT
rJMSF039B02+ TGGTTCATTGATGGTGCTCCTAAGTCCTACCCCATTCAACTTCGAAGTGCAACAAATTTT
rJMSF040F17+ TGGTTCATTGATGGTGCTCCTAAGTCCTACCCCATTCAACTTCGAAGTGCAACAAATTTT
rJMSF013C04+ TGGTTCATTGATGGTGCTCCTAAGTCCTACCCCATTCAACTTCGAAGTGCAACAAATTTT
____________________________________________________________
consensus TGGTTCATTGATGGTGCTCCTAAGTCCTACCCCATTCAACTTCGAAGTGCAACAAATTTT
. : . : . : . : . : . :
JMSF040F17- CTATTCAGCAGCAGAATCTGATCTG
rJMSF018C18+ CTATTCAGCAGCAGAATCTGATCTGAAACTCTGAAAGCAACGTTATTAGCATCTGAGGTT
rJMSF039B02+ CTATTCAGCAGCAGAATCTGATCTGAAACTCTGAAAGCAACGTTATTAGCATCTGAGGTT
rJMSF040F17+ CTATTCAGCAGCAGAATCTGATCTGAAACTCTGAAAGCAACGTTATTAGCATCTGAGGTT
rJMSF013C04+ CTATTCAGCAGCAGAATCTGATCTGAAACTCTGAAAGCAACGTTATTAGCATCTGAGGTT
____________________________________________________________
consensus CTATTCAGCAGCAGAATCTGATCTGAAACTCTGAAAGCAACGTTATTAGCATCTGAGGTT
. : . : . : . : . : . :
rJMSF018C18+ GTGGCTAATATCATGCAGTTAGAGAGTGAGTGTCAAGAATATAATGCATCCTCTGGTATT
rJMSF039B02+ GTGGCTAATATCATGCAGTTAGAGAGTGAGTGTCAAGAATATAATGCATCCTCTGGTATT
rJMSF040F17+ GTGGCTAATATCATGCAGTTAGAGAGTGAGTGTCAAGAATATAATGCATCCTCTGGTATT
rJMSF013C04+ GTGGCTAATATCATGCAGTTAGAGAGTGAGTGTCAAGAATATAATGCATCCTCTGGTATT
____________________________________________________________
consensus GTGGCTAATATCATGCAGTTAGAGAGTGAGTGTCAAGAATATAATGCATCCTCTGGTATT
. : . : . : . : . : . :
rJMSF018C18+ GTAATCAATAACACTATTTTTTGCTCCTTATTGTTGTCATAGAATAATTGCTGGTCAGTT
rJMSF039B02+ GTAATCAATAACACTATTTTTTGCTCCTTATTGTTGTCATAGAATAATTGCTGGTCAGTT
rJMSF040F17+ GTAATCAATAACACTATTTTTTGCTCCTTATTGTTGTCATAGAATAATTGCTGGTCAGTT
rJMSF013C04+ GTAATCAATAACACTATTTTTTGCTCCTTATTGTTGTCATAGAATAATTGCTGGTCAGTT
____________________________________________________________
consensus GTAATCAATAACACTATTTTTTGCTCCTTATTGTTGTCATAGAATAATTGCTGGTCAGTT
. : . : . : . : . : . :
rJMSF018C18+ TGCCGCATCGAATGTACAATGATAAATCATTACCAGTTCTGAGGATTC
rJMSF039B02+ TGCCGCATCGAATGTACAATGATAAATCATTACCAGTTCTGAGGATTC
rJMSF040F17+ TGCCGCATCGAATGTACAATGATAAATCATTACCAGTTCTGAGGATTC
rJMSF013C04+ TGCCGCATCGAATGTACAATGATAAATCATTACCAGTTCTGAGGATTCAGTTTCTTGCTC
____________________________________________________________
consensus TGCCGCATCGAATGTACAATGATAAATCATTACCAGTTCTGAGGATTCAGTTTCTTGCTC