Contig 007067:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002C12Sequence347006217 (9)ref|XP_009781763.1|73.2PREDICTED: uncharacterized protein LOC104230606 [Nicotiana sylvestris]737007067 (3)ref|XP_006349551.1|375PREDICTED: uncharacterized protein LOC102592127 [Solanum tuberosum]
JMSF013B18Sequence221006217 (9)803007067 (3)ref|XP_009781763.1|322PREDICTED: uncharacterized protein LOC104230606 [Nicotiana sylvestris]
JMSF048B20Sequence709006217 (9)ref|XP_009781763.1|166PREDICTED: uncharacterized protein LOC104230606 [Nicotiana sylvestris]751007067 (3)ref|XP_009781763.1|349PREDICTED: uncharacterized protein LOC104230606 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF002C12+                    GATTATGAAAATGGGAGGCCTGAAGCTACGTATAGTATGGGCATAAGGCA
rJMSF048B20+                                                           GGCATAAGGCA
                      ____________________________________________________________
consensus                       GATTATGAAAATGGGAGGCCTGAAGCTACGTATAGTATGGGCATAAGGCA
 
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rJMSF002C12+          GAAAGTGGCTGAAGAATTTGGATCGAGCCCTAACAAGAAAGGTGAGCTTGGCAAGCAGCA
rJMSF048B20+          GAAAGTGGCTGAAGAATTTGGATCGAGCCCTAACAAGAAAGGTGAGCNTGGCAAGCAGCA
rJMSF013B18+                                               AAAGGTGAGCNTGGCAAGCAGCA
                      ____________________________________________________________
consensus             GAAAGTGGCTGAAGAATTTGGATCGAGCCCTAACAAGAAAGGTGAGCTTGGCAAGCAGCA
 
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rJMSF002C12+          TGCAAAAGACGTTCTTGTGACCTCATTACGCGCTGGGAATTACCATGAGGAATTGGCTAG
rJMSF048B20+          TGCAAAAGACGTTCTTGTGACCTCATTACGCGCTGGGAATTACCATGAGGAATTGGCTAG
rJMSF013B18+          TGCAAAAGACGTTCTTGTGACCTCATTACGCGCTGGGAATTACCATGAGGAATTGGCTAG
                      ____________________________________________________________
consensus             TGCAAAAGACGTTCTTGTGACCTCATTACGCGCTGGGAATTACCATGAGGAATTGGCTAG
 
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rJMSF002C12+          TTCTGTCTTTTGCGGAGTTATGCCTGGCGATGGGTGGAGTGGACGGATGGAAGATAGTAT
rJMSF048B20+          TTCTGTCTTTTGCGGAGTTATGCCTGGCGATGGGTGGAGTGGACGGATGGAAGATAGTAT
rJMSF013B18+          TTCTGTCTTTTGCGGAGTTATGCCTGGCGATGGGTGGAGTGGACGGATGGAAGATAGTAT
                      ____________________________________________________________
consensus             TTCTGTCTTTTGCGGAGTTATGCCTGGCGATGGGTGGAGTGGACGGATGGAAGATAGTAT
 
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rJMSF002C12+          TTTGCAAGGGTGCATTCCTGTAGTCATTCAGGATGGTATATACCTGCCGTACGAGAATGT
rJMSF048B20+          TTTGCAAGGGTGCATTCCTGTAGTCATTCAGGATGGTATATACCTGCCGTACGAGAATGT
rJMSF013B18+          TTTGCAAGGGTGCATTCCTGTAGTCATTCAGGATGGTATATACCTGCCGTACGAGAATGT
                      ____________________________________________________________
consensus             TTTGCAAGGGTGCATTCCTGTAGTCATTCAGGATGGTATATACCTGCCGTACGAGAATGT
 
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rJMSF002C12+          CCTTAACTATGAAAGCTTTGCCGTTAGGATACGCGAAGATGAAATTCCGAATTTGATGAA
rJMSF048B20+          CCTTAACTATGAAAGCTTTGCCGTTAGGATACGCGAAGATGAAATTCCGAATTTGATGAA
rJMSF013B18+          CCTTAACTATGAAAGCTTTGCCGTTAGGATACGCGAAGATGAAATTCCGAATTTGATGAA
                      ____________________________________________________________
consensus             CCTTAACTATGAAAGCTTTGCCGTTAGGATACGCGAAGATGAAATTCCGAATTTGATGAA
 
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rJMSF002C12+          CATTCTCCGGAGTATAAACGAGACAGAAGTCGAATTCAAATTGGCAAACGTAAAGAAACT
rJMSF048B20+          CATTCTCCGGAGTATAAACGAGACAGAAGTCGAATTCAAATTGGCAAACGTAAAGAAACT
rJMSF013B18+          CATTCTCCGGAGTATAAACGAGACAGAAGTCGAATTCAAATTGGCAAACGTAAAGAAACT
                      ____________________________________________________________
consensus             CATTCTCCGGAGTATAAACGAGACAGAAGTCGAATTCAAATTGGCAAACGTAAAGAAACT
 
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rJMSF002C12+          CTGGCAGAGATTCTTTTATCGCGATTCCATCTCCCTTGAAGCTGAGAGACAAAAGGATGC
rJMSF048B20+          CTGGCAGAGATTCTTTTATCGCGATTCCATCTCCCTTGAAGCTGAGAGACAAAAGGATGC
rJMSF013B18+          CTGGCAGAGATTCTTTTATCGCGATTCCATCTCCCTTGAAGCTGAGAGACAAAAGGATGC
                      ____________________________________________________________
consensus             CTGGCAGAGATTCTTTTATCGCGATTCCATCTCCCTTGAAGCTGAGAGACAAAAGGATGC
 
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rJMSF002C12+          GTCTGGGCGCATCGATGACTGGGCCGAGCAGCTTTCACAGCTAAAGGAAGACGATGTCTT
rJMSF048B20+          GTCTGGGCGCATCGATGACTGGGCCGAGCAGCTTTCACAGCTAAAGGAAGACGATGTCTT
rJMSF013B18+          GTCTGGGCGCATCGATGACTGGGCCGAGCAGCTTTCACAGCTAAAGGAAGACGATGTCTT
                      ____________________________________________________________
consensus             GTCTGGGCGCATCGATGACTGGGCCGAGCAGCTTTCACAGCTAAAGGAAGACGATGTCTT
 
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rJMSF002C12+          CGCCACATTCATACAGGTGCTGCACTACAAGCTACACAACGACCCTTGGAGACGACTAGT
rJMSF048B20+          CGCCACATTCATACAGGTGCTGCACTACAAGCTACACAACGACCCTTGGAGACGACTAGT
rJMSF013B18+          CGCCACATTCATACAGGTGCTGCACTACAAGCTACACAACGACCCTTGGAGACGACTAGT
                      ____________________________________________________________
consensus             CGCCACATTCATACAGGTGCTGCACTACAAGCTACACAACGACCCTTGGAGACGACTAGT
 
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rJMSF002C12+          TCCTCGGAGGAAAAAGGAATTCGGATTGCCTGGAGAATGCTTAATGAGAAGATGATGTAT
rJMSF048B20+          TCCTCGGAGGAAAAAGGAATTCGGATTGCCTGGAGAATGCTTAATGAGAAGATGATGTAT
rJMSF013B18+          TCCTCGGAGGAAAAAGGAATTCGGATTGCCTGGAGAATGCTTAATGAGAAGATGATGTAT
                      ____________________________________________________________
consensus             TCCTCGGAGGAAAAAGGAATTCGGATTGCCTGGAGAATGCTTAATGAGAAGATGATGTAT
 
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rJMSF002C12+          ACAGAAAATGAAAATATATATATTTGTTAGAACACAGACAGCAGCTAAGGCATAAGAATG
rJMSF048B20+          ACAGAAAATGAAAATATATATATTTGTTAGAACACAGACAGCAGCTAAGGCATAAGAATG
rJMSF013B18+          ACAGAAAATGAAAATATATATATTTGTTAGAACACAGACAGCAGCTAAGGCATAAGAATG
                      ____________________________________________________________
consensus             ACAGAAAATGAAAATATATATATTTGTTAGAACACAGACAGCAGCTAAGGCATAAGAATG
 
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rJMSF002C12+          CCAACTGCAGGAGATGGAGATCTAAAG                                 
rJMSF048B20+          CCAACTGCAGGAGATGGAGATCTAAAGGGGAGCCACAAGAAGGCCACAATTTTGGCGAAA
rJMSF013B18+          CCAACTGCAGGAGATGGAGATCTAAAGGGGAGCCACAAGAAGGCCACAATTTTGGCGAAA
                      ____________________________________________________________
consensus             CCAACTGCAGGAGATGGAGATCTAAAGGGGAGCCACAAGAAGGCCACAATTTTGGCGAAA
 
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rJMSF048B20+          ATACAAAATT                                                  
rJMSF013B18+          ATACAAAATTTTCTATGCATATATCTTAGTAATATAACAGCATTGCAAAATTACATTCTT
                      ____________________________________________________________
consensus             ATACAAAATTTTCTATGCATATATCTTAGTAATATAACAGCATTGCAAAATTACATTCTT
 
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rJMSF013B18+          TTATAGACCTGTAAATCTGTTGGCACCTGGTAACAAATCATACTAAAAAAGATCAGAAAG
                      ____________________________________________________________
consensus             TTATAGACCTGTAAATCTGTTGGCACCTGGTAACAAATCATACTAAAAAAGATCAGAAAG