Contig 007065:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012P01Sequence412008032 (6)762007065 (3)ref|XP_009613357.1|1e-42PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana tomentosiformis
JMSF021P19Sequence650008032 (6)ref|XP_009613357.1|2e-22PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana tomentosiformis740007065 (3)ref|XP_009779024.1|1e-80PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana sylvestris]
JMSF043E16Sequence764008032 (6)ref|XP_009613357.1|2e-25PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana tomentosiformis744007065 (3)ref|XP_009779024.1|1e-36PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF021P19+                                                       TCCATTCCAGATTAT
                      ____________________________________________________________
consensus                                                          TCCATTCCAGATTAT
 
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rJMSF021P19+          GAAGATATTTGTAGAAAAGAAAATCAGATGCTTGAGCAAGCCCTTTTGGCAGATCTGGCT
                      ____________________________________________________________
consensus             GAAGATATTTGTAGAAAAGAAAATCAGATGCTTGAGCAAGCCCTTTTGGCAGATCTGGCT
 
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rJMSF021P19+          TATGTAGAGCTTGAACTGGGGGATCCATTGAGGGCTCTATCAACAGCAAGATCTCTATTG
                      ____________________________________________________________
consensus             TATGTAGAGCTTGAACTGGGGGATCCATTGAGGGCTCTATCAACAGCAAGATCTCTATTG
 
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rJMSF021P19+          AAACTCATTGAATGTTCCAAGATATATACCTTCTTGGGTAATGTCTATGCAGCTGAGGCT
                      ____________________________________________________________
consensus             AAACTCATTGAATGTTCCAAGATATATACCTTCTTGGGTAATGTCTATGCAGCTGAGGCT
 
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rJMSF021P19+          CTATGCTTGCTTAGCCGGCCAAAGGAGGCTGCGGAACATTTGTCAATGTATCTTTCTGAG
rJMSF012P01+                            CCAAAGGAGGCTGCGGAACATTTGTCAATGTATCTTTCTGAG
                      ____________________________________________________________
consensus             CTATGCTTGCTTAGCCGGCCAAAGGAGGCTGCGGAACATTTGTCAATGTATCTTTCTGAG
 
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rJMSF021P19+          ATTAAGGGTGTTGAACAGCCATTTAGTCAGGAGGATGTGGAAGCATGGAGAGTGGAGAAG
rJMSF043E16+               GGGTGTTGAACAGCCATTTAGTCAGGAGGATGTGGAAGCATGGAGAGTGGAGAAG
rJMSF012P01+          ATTAAGGGTGTTGAACAGCCATTTAGTCAGGAGGATGTGGAAGCATGGAGAGTGGAGAAG
                      ____________________________________________________________
consensus             ATTAAGGGTGTTGAACAGCCATTTAGTCAGGAGGATGTGGAAGCATGGAGAGTGGAGAAG
 
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rJMSF021P19+          GTAGTGGATTCAGAGGAGTCAAATGGTGGCTCAACAACTATGAACGAATCTCAAGGTTTT
rJMSF043E16+          GTAGTGGATTCAGAGGAGTCAAATGGTGGCTCAACAACTATGAACGAATCTCAAGGTTTT
rJMSF012P01+          GTAGTGGATTCAGAGGAGTCAAATGGTGGCTCAACAACTATGAACGAATCTCAAGGTTTT
                      ____________________________________________________________
consensus             GTAGTGGATTCAGAGGAGTCAAATGGTGGCTCAACAACTATGAACGAATCTCAAGGTTTT
 
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rJMSF021P19+          GTGTTCCTTAAACCAGAAGAGGCTCGAGGTATTCTGTTTACCAACTTGGCTGCCATGTCT
rJMSF043E16+          GTGTTCCTTAAACCAGAAGAGGCTCGAGGTATTCTGTTTACCAACTTGGCTGCCATGTCT
rJMSF012P01+          GTGTTCCTTAAACCAGAAGAGGCTCGAGGTATTCTGTTTACCAACTTGGCTGCCATGTCT
                      ____________________________________________________________
consensus             GTGTTCCTTAAACCAGAAGAGGCTCGAGGTATTCTGTTTACCAACTTGGCTGCCATGTCT
 
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rJMSF021P19+          GCAGTTCAGGGGGATCTTGACCAGGCGCATGCATATGCACTAGCAGCAGCGGCAATCATA
rJMSF043E16+          GCAGTTCAGGGGGATCTTGACCAGGCGCATGCATATGCACTAGCAGCAGCGGCAATCATA
rJMSF012P01+          GCAGTTCAGGGGGATCTTGACCAGGCGCATGCATATGCACTAGCAGCAGCGGCAATCATA
                      ____________________________________________________________
consensus             GCAGTTCAGGGGGATCTTGACCAGGCGCATGCATATGCACTAGCAGCAGCGGCAATCATA
 
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rJMSF021P19+          CCCAGGAGTACCAAAGCTATACTCACTGCAATTTATGTTGACCTTTTGCAAGGGAAGACA
rJMSF043E16+          CCCAGGAGTACCAAAGCTATACTCACTGCAATTTATGTTGACCTTTTGCAAGGGAAGACA
rJMSF012P01+          CCCAGGAGTACCAAAGCTATACTCACTGCAATTTATGTTGACCTTTTGCAAGGGAAGACA
                      ____________________________________________________________
consensus             CCCAGGAGTACCAAAGCTATACTCACTGCAATTTATGTTGACCTTTTGCAAGGGAAGACA
 
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rJMSF021P19+          AAAGAAGCTGTTGCCAAGTTAAGAAAATGTAGTTCTGTTAGATTCATTCACAACAGCCTA
rJMSF043E16+          AAAGAAGCTGTTGCCAAGTTAAGAAAATGTAGTTCTGTTAGATTCATTCACAACAGCCTA
rJMSF012P01+          AAAGAAGCTGTTGCCAAGTTAAGAAAATGTAGTTCTGTTAGATTCATTCACAACAGCCTA
                      ____________________________________________________________
consensus             AAAGAAGCTGTTGCCAAGTTAAGAAAATGTAGTTCTGTTAGATTCATTCACAACAGCCTA
 
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rJMSF021P19+          CCCACAAATGGTTCTTTATGATGATGATGATTGTATTGGTAGTTTTCACTGGTTGTGTCA
rJMSF043E16+          CCCACAAATGGTTCTTTATGATGATGATGATTGTATTGGTAGTTTTCACTGGTTGTGTCA
rJMSF012P01+          CCCACAAATGGTTCTTTATGATGATGATGATTGTATTGGTAGTTTTCACTGGTTGTGTCA
                      ____________________________________________________________
consensus             CCCACAAATGGTTCTTTATGATGATGATGATTGTATTGGTAGTTTTCACTGGTTGTGTCA
 
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rJMSF021P19+          AGCCCACCCTTCTTCACATCAGGTTAGAAGGTAGTCTGACAATCCCTATATAGGTGATTT
rJMSF043E16+          AGCCCACCCTTCTTCACATCAGGTTAGAAGGTAGTCTGACAATCCCTATATAGGTGATTT
rJMSF012P01+          AGCCCACCCTTCTTCACATCAGGTTAGAAGGTAGTCTGACAATCCCTATATAGGTGATTT
                      ____________________________________________________________
consensus             AGCCCACCCTTCTTCACATCAGGTTAGAAGGTAGTCTGACAATCCCTATATAGGTGATTT
 
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rJMSF021P19+          GTACC                                                       
rJMSF043E16+          GTACCATATATAGTTCATCCCAGGAATAAGTTTTCATTTGTAACTTTTCAATTTTACATA
rJMSF012P01+          GTACCATATATAGTTCATCCCAGGAATAAGTTTTCATTTGTAACTTTTCAATTTTACATA
                      ____________________________________________________________
consensus             GTACCATATATAGTTCATCCCAGGAATAAGTTTTCATTTGTAACTTTTCAATTTTACATA
 
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rJMSF043E16+          TTCAGTTGTAGGTTTATTTTGGTTGGGGGGTGAGGGGGGGAGTGGGTGCAGAGATTATTT
rJMSF012P01+          TTCAGTTGTAGGTTTATTTTGGTTGGGGGGTGAGGGGGGGAGTGGGTGCAGAGATTATTT
                      ____________________________________________________________
consensus             TTCAGTTGTAGGTTTATTTTGGTTGGGGGGTGAGGGGGGGAGTGGGTGCAGAGATTATTT
 
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rJMSF043E16+          TGGCTGTTGCAGATGCCACCACCTATAAGAGATTTGAGATCTGTAATTTTTGTTTTAGAG
rJMSF012P01+          TGGCTGTTGCAGATGCCACCACCTATAAGAGATTTGAGATCTGTAGTTTTTGTTTTAGAG
                      ____________________________________________________________
consensus             TGGCTGTTGCAGATGCCACCACCTATAAGAGATTTGAGATCTGTAGTTTTTGTTTTAGAG
 
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rJMSF043E16+          AGCTGTGTTTTCTAGAGTCTAATTTTAGCTTCCCGTTCCAACCTTCCAAAGGTATAGAGT
rJMSF012P01+          AGCTGTGTTTTCTAGAGTCTAATTTTAGCTTCCCGTTCCAACCTTCCAAAGGTATAGAGT
                      ____________________________________________________________
consensus             AGCTGTGTTTTCTAGAGTCTAATTTTAGCTTCCCGTTCCAACCTTCCAAAGGTATAGAGT