Contig 007063:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN007C15Sequence487007063 (4)ref|XP_004234637.1|4e-40PREDICTED: protein BRICK 1 [Solanum lycopersicum] ref|XP_006364014.1| PREDICTED:
JMFN028G21Sequence472007063 (4)ref|XP_004234637.1|3e-40PREDICTED: protein BRICK 1 [Solanum lycopersicum] ref|XP_006364014.1| PREDICTED:
JMSF012K12Sequence497007063 (4)ref|XP_004234637.1|4e-40PREDICTED: protein BRICK 1 [Solanum lycopersicum] ref|XP_006364014.1| PREDICTED:491007063 (4)ref|XP_004234637.1|4e-40PREDICTED: protein BRICK 1 [Solanum lycopersicum] ref|XP_006364014.1| PREDICTED:

Alignment

This contig is upended


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JMFN028G21+                  AACCTCCAAAGATACAATTAATTTTATTTCAATGAATTGCAATATTGACAACA
JMFN007C15+                  AACCTCCAAAGATACAATTAATTTTATTTCAATGAATTGCAATATTGACAACA
JMSF012K12+                                                            TATTGACAACA
rJMSF012K12-                                                           TATTGACAACA
                      ____________________________________________________________
consensus                    AACCTCCAAAGATACAATTAATTTTATTTCAATGAATTGCAATATTGACAACA
 
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JMFN028G21+           GCTAGATCTCGTGCTCAACAT-GTATGATCACAGAAGTATAGTTACATACAGTACGAAAA
JMFN007C15+           GCTAGATCTCGTGCTCAACAT-GTATGATCACAGAAGTATAGTTACATACAGTACGAAAA
JMSF012K12+           GCTAGATCTCGTGCTCAACAT-GTATGATCACAGAAGTATAGTTACATACAGTACGAAAA
rJMSF012K12-          GCTAGATCTCGTGCTCAACATGGTATGATCACAGAAGTATAGTTACATACAGTACGAAAA
                      ____________________________________________________________
consensus             GCTAGATCTCGTGCTCAACAT-GTATGATCACAGAAGTATAGTTACATACAGTACGAAAA
 
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JMFN028G21+           TGAAGTAGCCCGTAGCTTACAGATAACTGATAAAAAGTAGCAGCACAAATCTAGTCTAGT
JMFN007C15+           TGAAGTAGCCCGTAGCTTACAGATAACTGATAAAAAGTAGCAGCACAAATCTAGTCTAGT
JMSF012K12+           TGAAGTAGCCCGTAGCTTACAGATAACTGATAAAAAGTAGCAGCACAAATCTAGTCTAGT
rJMSF012K12-          TGAAGTAGCCCGTAGCTTACAGATAACTGATAAAAAGTAGCAGCACAAATCTAGTCTAGT
                      ____________________________________________________________
consensus             TGAAGTAGCCCGTAGCTTACAGATAACTGATAAAAAGTAGCAGCACAAATCTAGTCTAGT
 
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JMFN028G21+           GAGAAATGAGAATATCACCGATCATGAATCAAGTATTAAACAGAGCTGGATTAGCCGTGG
JMFN007C15+           GAGAAATGAGAATATCACCGATCATGAATCAAGTATTAAACAGAGCTGGATTAGCCGTGG
JMSF012K12+           GAGAAATGAGAATATCACCGATCATGAATCAAGTATTAAACAGAGCTGGATTAGCCGTGG
rJMSF012K12-          GAGAAATGAGAATATCACCGATCATGAATCAAGTATTAAACAGAGCTGGATTAGCCGTGG
                      ____________________________________________________________
consensus             GAGAAATGAGAATATCACCGATCATGAATCAAGTATTAAACAGAGCTGGATTAGCCGTGG
 
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JMFN028G21+           CCGTGCTAACTTGAACTTCGAGCAGTTCTAGTCTACGCTCCAGTGTATCGAGCTTCTCGT
JMFN007C15+           CCGTGCTAACTTGAACTTCGAGCAGTTCTAGTCTACGCTCCAGTGTATCGAGCTTCTCGT
JMSF012K12+           CCGTGCTAACTTGAACTTCGAGCAGTTCTAGTCTACGCTCCAGTGTATCGAGCTTCTCGT
rJMSF012K12-          CCGTGCTAACTTGAACTTCGAGCAGTTCTAGTCTACGCTCCAGTGTATCGAGCTTCTCGT
                      ____________________________________________________________
consensus             CCGTGCTAACTTGAACTTCGAGCAGTTCTAGTCTACGCTCCAGTGTATCGAGCTTCTCGT
 
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JMFN028G21+           TCAACGACGCCAGTTTGCTCTTCGTCGTCACCTCGAATTGGACGAGGAAATCAAAGAGGC
JMFN007C15+           TCAACGACGCCAGTTTGCTCTTCGTCGTCACCTCGAATTGGACGAGGAAATCAAAGAGGC
JMSF012K12+           TCAACGACGCCAGTTTGCTCTTCGTCGTCACCTCGAATTGGACGAGGAAATCAAAGAGGC
rJMSF012K12-          TCAACGACGCCAGTTTGCTCTTCGTCGTCACCTCGAATTGGACGAGGAAATCAAAGAGGC
                      ____________________________________________________________
consensus             TCAACGACGCCAGTTTGCTCTTCGTCGTCACCTCGAATTGGACGAGGAAATCAAAGAGGC
 
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JMFN028G21+           GGCGGACATTAAGGGAGATGTTAGAGATGAATTCGCGGTTCTCCCAGTCTGCCTGCACCG
JMFN007C15+           GGCGGACATTAAGGGAGATGTTAGAGATGAATTCGCGGTTCTCCCAGTCTGCCTGCACCG
JMSF012K12+           GGCGGACATTAAGGGAGATGTTAGAGATGAATTCGCGGTTCTCCCAGTCTGCCTGCACCG
rJMSF012K12-          GGCGGACATTAAGGGAGATGTTAGAGATGAATTCGCGGTTCTCCCAGTCTGCCTGCACCG
                      ____________________________________________________________
consensus             GGCGGACATTAAGGGAGATGTTAGAGATGAATTCGCGGTTCTCCCAGTCTGCCTGCACCG
 
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JMFN028G21+           CTATTCCCACGTTTACGGCGTTCGTTATCCCGCCGGCTCTCGCCATTTT           
JMFN007C15+           CTATTCCCACGTTTACGGCGTTCGTTATCCCGCCGGCTCTCGCCATTTTTGCCGCTCCTC
JMSF012K12+           CTATTCCCACGTTTACGGCGTTCGTTATCCCGCCGGCTCTCGCCATTTTTGCCGCTCCTC
rJMSF012K12-          CTATTCCCACGTTTACGGCGTTCGTTATCCCGCCGGCTCTCGCCATTTTTGCCGCTCCTC
                      ____________________________________________________________
consensus             CTATTCCCACGTTTACGGCGTTCGTTATCCCGCCGGCTCTCGCCATTTTTGCCGCTCCTC
 
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JMFN007C15+           TCTCCCCTCCTTCAC                                             
JMSF012K12+           TCTCCCCTCCTTCACGAGACAGCTTTTACTAGATTTTGGTAGGTTTTGCTTTTTTATTTC
rJMSF012K12-          TCTCCCCTCCTTCACGAGACAGCTTTTACTAGATTTTGGTAGGTTTTGCTTTTTTATTTC
                      ____________________________________________________________
consensus             TCTCCCCTCCTTCACGAGACAGCTTTTACTAGATTTTGGTAGGTTTTGCTTTTTTATTTC