Contig 007061:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007D11+                                                             TAGATTTTA
rJMSF009B07+                                                     TCTTCAGTTAGATTTTA
rJMSF014L09+                                                             TAGATTTTA
                      ____________________________________________________________
consensus                                                        TCTTCAGTTAGATTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007D11+          TTCTCACATATATNGTACATATACCCAAAATCCCTGACTTTGAATAGGTTTCACCTTGTT
rJMFF017K16+               ACATATATTGTACATATACCCAAAATCCCTGACTTTGAATAGGTTTCACCTTGTT
rJMSF009B07+          TTCTCACATATATTGTACATATACCCAAAATCCCTGACTTTGAATAGGTTTCACCTTGTT
rJMFF037H18+                      TTGTACATATACCCAAAATCCCTGACTTTGAATAGGTTTCACCTTGTT
rJMSF021M09+                                                     ATAGGTTTCACCTTGTT
rJMSF014L09+          NTCTCACATATATTGTACATATACCCAAAATCCCTGACTTTGAATAGGTTTCACCTTGTT
                      ____________________________________________________________
consensus             TTCTCACATATATTGTACATATACCCAAAATCCCTGACTTTGAATAGGTTTCACCTTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007D11+          TAGGAATTTCCGTCATTGTAACCATAACCTAGCCCTTTGTTCCTGGACTTACCTCAACTT
rJMFF017K16+          TAGGAATTTCCGTCATTGTAACCATAACCTAGCCCTTTGTTCCTGGACTTACCTCAACTT
rJMSF009B07+          TAGGAATTTCCGTCATTGTAACCATAACCTAGCCCTTTGTTCCTGGACTTACCTCAACTT
rJMFF037H18+          TAGGAATTTCCGTCATNGTAACCATAACCTAGCCCTTTGTTCCTGGACTTACCTCAACTT
rJMSF014K09+                               CCATAACCTAGCCCTTTGTTCCTGGACTTACCTCAACTT
rJMFF011A20+                                               TGTTCCTGGACTTACCTCAACTT
rJMSF015I11+              AATTTCCGTCATNGTAACCATAACCTAGCCCTTTGTTCCTGGACTTACCTCAACTT
rJMSF021M09+          TAGGAATTTCCGTCATNGTAACCATAACCTAGCCCTTTGTTCCTGGACTTACCTCAACTT
rJMSF014L09+          TAGGAATTTCCGTCATNGTAACCATAACCTAGCCCTTTGTTCCTGGACTTACCTCAACTT
rJMSF049P11+                  TCCGTCATNGTAACCATAACCTAGCCC-TTGTTCCTGGACTTACCTCAACTT
rJMSF012F19+                 TTCCGTCATTGTAACCATAACCTAGCCC-TTGNTCCTGGACTTACCTCAACTT
                      ____________________________________________________________
consensus             TAGGAATTTCCGTCATTGTAACCATAACCTAGCCCTTTGTTCCTGGACTTACCTCAACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007D11+          CCCCCGGTTTAATGATGAATTGCCTGTCTGTAACTTTAGCTTATATGCTAACTGAATAGG
rJMFF017K16+          CCCCCGGTTTAATGATGAATTGCCTGTCTGTAACTTTAGCTTATATGCTAACTGAATAGG
rJMSF009B07+          CCCCCGGTTTAATGATGAATTGCCTGTCTGTAACTTTAGCTTATATGCTAACTGAATAGG
rJMFF037H18+          CCCCCGGTTTAATGATGAATTGCCTGTCTGTAACTTTAGCTTATATGCTAACTGAATAGG
rJMSF014K09+          CCCCCGGTTTAATGATGAATTGCCTGTCTGTAACTTTAGCTTATATGCTAACTGAATAGG
rJMSF024G14+                                                           AACTGAATAGG
rJMFF011A20+          CCCCCGGTTTAATGATGAATTGCCTGTCTGTAACTTTAGCTTATATGCTAACTGAATAGG
rJMSF015I11+          CCCCCGGTTTAATGATGAATTGCCTGTCTGTAACTTTAGCTTATATGCTAACTGAATAGG
rJMSF021M09+          CCCCCGGTTTAATGATGAATTGCCTGTCTGTAACTTTAGCTTATATGCTAACTGAATAGG
rJMSF014L09+          CCCCCGGTTTAATGATGAATTGCCTGTCTGTAACTTTAGCTTATATGCTAACTGAATAGG
rJMSF049P11+          CCCCCGGTTTAATGATGAATTGCCTGTCTGTAACTTTAGCTTATATGCTAACTGAATAGG
rJMSF012F19+          CCCCCGGTTTAATGATGAATTGCCTGTCTGTAACTTTAGCTTATATGCTAACTGAATAGG
                      ____________________________________________________________
consensus             CCCCCGGTTTAATGATGAATTGCCTGTCTGTAACTTTAGCTTATATGCTAACTGAATAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007D11+          CTATTTAGAGAACTGTTTCATTCCAACTTCTTGTCCTTCAATCCCCAAGTTGTCCTTTTT
rJMFF017K16+          CTATTTAGAGAACTGTTTCATTCCAACTTCTTGTCCTTCAATCCCCAAGTTGTCCTTTTT
rJMSF009B07+          CTATTTAGAGAACTGTTTCATTCCAACTTCTTGTCCTTCAATCCCCAAGTTGTCCTTTTT
rJMFF037H18+          CTATTTAGAGAACTGTTTCATTCCAACTTCTTGTCCTTCAATCCCCAAGTTGTCCTTTTT
rJMSF014K09+          CTATTTAGAGAACTGTTTCATTCCAACTTCTTGTCCTTCAATCCNCAAGTTGTCCTTTTN
rJMSF024G14+          CTATTTAGAGAACTGATTCATTCCAACNTCTNGTCCTTCAATCCCCAAGNTGTCCNNTTT
rJMFF011A20+          CTATTTAGAGAACTGTTTCATTCCAACTTCTTGTCCTTCAATCCCCAAGTTGTCCTTTTT
rJMSF016K07+                                               TCAATCCCCAAGTTGTCCNTTTT
rJMSF015I11+          CTATTTAGAGAACTGTTTCATTCCAACTTCTTGTCCTTCAATCCCCAAGTTGTCCTTTTT
rJMSF021M09+          CTATTTAGAGAACTGTTTCATTCCAACTTCTTGTCCTTCAATCCCCAAGTTGTCCTTTTT
rJMSF014L09+          CTATTTAGAGAACTGTTTCATTCCAACTTCTTGTCCTTCAATCCCCAAGTTGTCCTTTTT
rJMSF049P11+          CTATTTAGAGAACTGTTTCATTCCAACTTCTTGTCCTTCAATCCCCAAGTTGTCCTTTTT
rJMSF012F19+          CTATTTAGAGAACTGTTTCATTCCAACTTCTTGTCCTTCAATCCCCAAGTTGTCCTTTTT
                      ____________________________________________________________
consensus             CTATTTAGAGAACTGTTTCATTCCAACTTCTTGTCCTTCAATCCCCAAGTTGTCCTTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007D11+          TCCTCTTTACATTCTTATCTTCTTTCTTTAGTTTAGATAGGTTTCAGTTTTATACTTTAC
rJMFF017K16+          TCCTCTTTACATTCTTATCTTCTTTCTTTAGTTTAGATAGGTTTCAGTTTTATACTTTAC
rJMSF009B07+          TCCTCTTTACATTCTTATCTTCTTTCTTTAGTTTAGATAGGTTTCAGTTTTATACTTTAC
rJMFF037H18+          TCCTCTTTACATTCTTATCTTCTTTCTTTAGTTTAGATAGGTTTCAGTTTTATACTTTAC
rJMSF014K09+          TCCTCTTTACATTCTTATCTTCTTTCTTTAGTTTAGATAGGTTTCAGTNTTATACTTTAC
rJMSF024G14+          TCCTCTTTACATTCTTATCTTCNTTCTNTAGNTTAGATAGGTTTCAGTTTTATNCTTTAC
rJMFF011A20+          TCCTCTTTACATTCTTATCTTCTTTCTTTAGTTTAGATAGGTTTCAGTTTTATACTTTAC
rJMSF016K07+          NCCTCTTAACATTCTTATNTNCTTTCNATAGNTTNGATAGGTNTCAGTTNTATNCTNTAG
rJMSF015I11+          TCCTCTTTACATTCTTATCTTCTTTCTTTAGTTTAGATAGGTTTCAGTTTTATACTTTAC
rJMSF021M09+          TCCTCTTTACATTCTTATCTTCTTTCTTTAGTTTAGATAGGTTTCAGTTTTATACTTTAC
rJMSF014L09+          TCCTCTTTACATTCTTATCTTCTTTCTTTAGTTTAGATAGGTTTCAGTTTTATACTTTAC
rJMSF049P11+          TCCTCTTTACATTCTTATCTTCTTTCTTTAGTTTAGATAGGTTTCAGTTTTATACTTTAC
rJMSF012F19+          TCCTCTTTACATTCTTATCTTCTTTCTTTAGTTTAGATAGGTTTCAGTTTTATACTTTAC
                      ____________________________________________________________
consensus             TCCTCTTTACATTCTTATCTTCTTTCTTTAGTTTAGATAGGTTTCAGTTTTATACTTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007D11+          TAGTAGAAGATGCTTTCTCCTTCGCCATGTTTCTGGTTTTTTATAAGAAAATGGGAAGGG
rJMFF017K16+          TAGTAGAAGATGCTTTCTCCTTCGCCATGTTTCTGGTTTTTTATAAGAAAATGGGAAGGG
rJMSF009B07+          TAGTAGAAGATGCTTTCTCCTTCGCCATGTTTCTGGTTTTTTATAAGAAAATGGGAAGGG
rJMFF037H18+          TAGTAGAAGATGCTTTCTCCTTCGCCATGTTTCTGGTTTTTTATAAGAAAATGGGAAGGG
rJMSF014K09+          TAGTAGAAGATGCTTTCTCCTTCGCCATGTTTCTGGTTTTTTATAAGAAAATGGGAAGGG
rJMSF024G14+          TAGNAGAAGANGCNNTCNCCTTCGCCATGTTTCNGGTNTTTTATAAGAAAATGGGAAGGG
rJMFF011A20+          TAGTAGAAGATGCTTTCTCCTTCGCCATGTTTCTGGTTTTTTATAAGAAAATGGGAAGGG
JMFN028J17-                 AAGATGCTTTCTCCTTCGCCATGTTTCTGGTTTTTTATAAGAAAATGGGAAGGG
rJMSF016K07+          TAGTAGAAGATGCTTTCTCNTTNGCCATGTTTCTGGTNAANTATAAGAAAATGGGAAGGN
rJMSF015I11+          TAGTAGAAGATGCTTTCTCCTTCGCCATGTTTCTGGTTTTTTATAAGAAAATGGGAAGGG
rJMSF021M09+          TAGTAGAAGATGCTTTCTCCTTCGCCATGTTTCTGGTTTTTTATAAGAAAATGGGAAGGG
rJMSF014L09+          TAGTAGAAGATGCTTTCTCCTTCGCCATGTTTCTGGTTTTTTATAAGAAAATGGGAAGGG
rJMSF049P11+          TAGTAGAAGATGCTTTCTCCTTCGCCATGTTTCTGGTTTTTTATAAGAAAATGGGAAGGG
rJMSF012F19+          TAGTAGAAGATGCTTTCTCCTTCGCCATGTTTCTGGTTTTTTATAAGAAAATGGGAAGGG
                      ____________________________________________________________
consensus             TAGTAGAAGATGCTTTCTCCTTCGCCATGTTTCTGGTTTTTTATAAGAAAATGGGAAGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007D11+          GAAAGCCAAGTTGGCTACATCCACCTCTGCTCGTGTTCTTTTGTTGTTAGCTGAGTTCTC
rJMFF017K16+          GAAAGCCAAGTTGGCTACATCCACCTCTGCTCGTGTTCTTTTGTTGTTAGCTGAGTTCTC
rJMSF009B07+          GAAAGCCAAGTTGGCTACATCCACCTCTGCTCGTGTTCTTTTGTTGTTAGCTGAGTTCTC
rJMFF037H18+          GAAAGCCAAGTTGGCTACATCCACCTCTGCTCGTGTTCTTTTGTTGTTAGCTGAGTTCTC
rJMSF014K09+          GAAAGCCAAGTTGGCTACATCCACCTCTGCTCGTGTTCTTTTGTTGTTAGCTGAGTTCTC
rJMSF024G14+          GAAAGCCAAGTTGGCNACATCCACCTCTGCT                             
rJMFF011A20+          GAAAGCCAAGTTGGCTACATCCACCTCTGCTTGTGTTCTTTTGTTGTTAGCTGAGTTCTC
JMFN028J17-           GAAAGCCAAGTTGGCTACATCCACCTCTGCTCGTGTTCTTTTGTTGTTAGCTGAGTTCTC
rJMSF016K07+          GAAAGCCAAGTNGGCTACATCCACCTNTGCTCGTGTTCTTNNGNNGTTAGCTGAGTTNTC
rJMSF015I11+          GAAAGCCAAGTTGGCTACATCCACCTCTGCTCGTGTTCTTTTGTTGTTAGCTGAGTTCTC
rJMSF021M09+          GAAAGCCAAGTTGGCTACATCCACCTCTGCTCGTGTTCTTTTGTTGTTAGCTGAGTTCTC
rJMSF014L09+          GAAAGCCAAGTTGGCTACATCCACCTCTGCTCGTGTTCTTTTGTTGTTAGCTGAGTTCTC
rJMSF049P11+          GAAAGCCAAGTTGGCTACATCCACCTCTGCTCGTGTTCTTTTGTTGTTAGCTGAGTTCTC
rJMSF012F19+          GAAAGCCAAGTTGGCTACATCCACCTCTGCTCGTGTTCTTTTGTTGTTAGCTGAGTTCTC
                      ____________________________________________________________
consensus             GAAAGCCAAGTTGGCTACATCCACCTCTGCTCGTGTTCTTTTGTTGTTAGCTGAGTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007D11+          TCTGCTAATCATGTTATCCACACTTCAATTCCAAGGATCCATGTTTTCTCTGGAGAATAG
rJMFF017K16+          TCTGCTAATCATGTTATCCACACTTCAATTCCAAGGATCCATGTTTTCTCTGGAGAATAG
rJMSF009B07+          TCTGCTAATCATGTTATCCACACTTCAATTCCAAGGATCCATGTTTTCTCTGGAGAATAG
rJMFF037H18+          TCTGCTAATCATGTTATCCACACTTCAATTCCAAGGATCCATGTTTTCTCTGGAGAATAG
rJMSF014K09+          TCTGCTAATCATGTTATCCACACTTCAATTCCAAGGATCCATGTTTTCTCTGGAGAATAG
rJMFF011A20+          TCTGCTAATCATGTTATCCACACTTCAATTCCAAGGATCCATGTTTTCTCTGGAGAATAG
JMFN028J17-           TCTGCTAATCATGTTATCCACACTTCAATTCCAAGGATCCATGTTTTCTCTGGAGAATAG
rJMSF016K07+          TCTGCTAATCANGNTATCCACNCTTCAATTCCANGGATCCATGNNNTNTCNGGAGAATAG
rJMSF015I11+          TCTGCTAATCATGTTATCCACACTTCAATTCCAAGGATCCATGTTTTCTCTGGAGAATAG
rJMSF021M09+          TCTGCTAATCATGTTATCCACACTTCAATTCCAAGGATCCATGTTTTCTCTGGAGAATAG
rJMSF014L09+          TCTGCTAATCATGTTATCCACACTTCAATTCCAAGGATCCATGTTTTCTCTGGAGAATAG
rJMSF049P11+          TCTGCTAATCATGTTATCCACACTTCAATTCCAAGGATCCATGTTTTCTCTGGAGAATAG
rJMSF012F19+          TCTGCTAATCATGTTATCCACACTTCAATTCCAAGGATCCATGTTTTCTCTGGAGAATAG
                      ____________________________________________________________
consensus             TCTGCTAATCATGTTATCCACACTTCAATTCCAAGGATCCATGTTTTCTCTGGAGAATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007D11+          TTGATTATACCAAGCTGCTGTTCACAAGCCCTTATATGGCGGAACGAATGGAAGAAAGGT
rJMFF017K16+          TTGATTATACCAAGCTGCTGTTCACAAGCCCTTATATGGCGGAACGAATGGAAGAAAGGT
rJMSF009B07+          TTGATTATACCAAGCTGCTGTTCACAAGCCCTTATATGGCGGAACGAATGGAAGAAAGGT
rJMFF037H18+          TTGATTATACCAAGCTGCTGTTCACAAGCCCTTATATGGCGGAACGAATGGAAGAAAGGT
rJMSF014K09+          TTGATTATACCAAGCTGCTGTTCACAAGCCCTTATATGGCGGAACGAATGGAAGAAAGGT
rJMFF011A20+          TTGATTATACCAAGCTGCTGTTCACAAGCCCTTATATGGCGGAACGAATGGAAGAAAGGT
JMFN028J17-           TTGATTATACCAAGCTGCTGTTCACAAGCCCTTATATGGCGGAACGAATGGAAGAAAGGT
rJMSF016K07+          TCGATTATACCAAGCNGNTGNTCACAAGCCCNGATANGNCGGAANGAANGGAAGAAAGGT
rJMSF015I11+          TTGATTATACCAAGCTGCTGTTCACAAGCCCTTATATGGCGGAACGAATGGAAGAAAGGT
rJMSF021M09+          TTGATTATACCAAGCTGCTGTTCACAAGCCCTTATATGGCGGAACGAATGGAAGAAAGGT
rJMSF014L09+          TTGATTATACCAAGCTGCTGTTCACAAGCCCTTATATGGCGGAACGAATGGAAGAAAGGT
rJMSF049P11+          TTGATTATACCAAGCTGCTGTTCACAAGCCCTTATATGGCGGAACGAATGGAAGAAAGGT
rJMSF012F19+          TTGATTATACCAAGCTGCTGTTCACAAGCCCTTATATGGCGGAACGAATGGAAGAAAGGT
                      ____________________________________________________________
consensus             TTGATTATACCAAGCTGCTGTTCACAAGCCCTTATATGGCGGAACGAATGGAAGAAAGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007D11+          TGTTTCTGAACCTAGCTGTATGCGTTCTTGTTCTTGTTCTAGCTGGCGGTGTTCGTCTGT
rJMFF017K16+          TGTTTCTGAACCTAGCTGTATGCGTTCTTGTTCTTGTTCTAGCTGGCGGTGTTCGTCTGT
rJMSF009B07+          TGTTTCTGAACCTAGCTGTATGCGTTCTTGTTCTTGTTCTAGCTGGCGGTGTTCGTCTGT
rJMFF037H18+          TGTTTCTGAACCTAGCTGTATGCGTTCTTGTTCTTGTTCTAGCTGGCGGTGTTCGTCTGT
rJMSF014K09+          TGTTTCTGAACCTAGCNGTATGCGTTCTTGTTCTTGTTCTAGCTGGCGGTGTTCGTCNGT
rJMFF011A20+          TGTTTCTGAACCTAGCTGTATGCGTTCTTGTTCTTGTTCTAGCTGGCGGTGTTCGTCTGT
JMFN028J17-           TGTTTCTGAACCTAGCTGTATGCGTTCTTGTTCTTGTTCTAGCTGGCGGTGTTCGTCTGT
rJMSF016K07+          TGTTTCTGAACCTAGCTGTANGCGTTCTTGTTCNTGNTCTAGCTGGCGGTGTTCGTCTGT
rJMSF015I11+          TGTTTCTGAACCTAGCTGTATGCGTTCTTGTTCTTGTTCTAGCTGGCGGTGTTCGTCTGT
rJMSF021M09+          TGTTTCTGAACCTAGCTGTATGCGTTCTTGTTCTTGTTCTAGCTGGCGGTGTTCGTCTGT
rJMSF014L09+          TGTTTCTGAACCTAGCTGTATGCGTTCTTGTTCTTGTTCTAGCTGGCGGTGTTCGTCTGT
rJMSF049P11+          TGTTTCTGAACCTAGCTGTATGCGTTCTTGTTCTTGTTCTAGCTGGCGGTGTTCGTCTGT
rJMSF012F19+          TGTTTCTGAACCTAGCTGTATGCGTTCTTGTTCTTGTTCTAGCTGGCGGTGTTCGTCTGT
                      ____________________________________________________________
consensus             TGTTTCTGAACCTAGCTGTATGCGTTCTTGTTCTTGTTCTAGCTGGCGGTGTTCGTCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007D11+          GGGTTATTTTATTCCATTTCTAGTGGTGTCTGTAATTTGGTTACTCCCCGTATGGTATGG
rJMFF017K16+          GGGTTATTTTATTCCATTTCTAGTGGTGTCTGTAATTTGGTTACTCCCCGTATGGTATGG
rJMSF009B07+          GGGTTATTTTATTCCATTTCTAGTGGTGTCTGTAATTTGGTTACTCCCCGTATGGTATGG
rJMFF037H18+          GGGTTATTTTATTCCATTTCTAGTGGTGTCTGTAATTTGGTTACTCCCCGTATGGTATGG
rJMSF014K09+          GGGTTATTTTATTCCATTTCTAGTGGTGTCTGTAATTTGGTTACTCCCCGTATGGTATGG
rJMFF011A20+          GGGTTATTTTATTCCATTTCTAGTGGTGTCTGTAATTTGGTTACTCCCCGTATGGTATGG
JMFN028J17-           GGGTTATTTTATTCCATTTCTAGTGGTGTCTGTAATTTGGTTACTCCCCGTATGGTATGG
rJMSF016K07+          GGGTTNTTTTATTCCANTTNTAGTGGTGTCTGTAATTTGGTTACTCCCCGTATGNTANGG
rJMSF015I11+          GGGTTATTTTATTCCATTTCTAGTGGTGTCTGTAATTTGGTTACTCCCCGTATGGTATGG
rJMSF021M09+          GGGTTATTTTATTCCATTTCTAGTGGTGTCTGTAATTTGGTTACTCCCCGTATGGTATGG
rJMSF014L09+          GGGTTATTTTATTCCATTTCTAGTGGTGTCTGTAATTTGGTTACTCCCCGTATGGTATGG
rJMSF049P11+          GGGTTATTTTATTCCATTTCTAGTGGTGTCTGTAATTTGGTTACTCCCCGTATGGTATGG
rJMSF012F19+          GGGTTATTTTATTCCATTTCTAGTGGTGTCTGTAATTTGGTTACTCCCCGTATGGTATGG
                      ____________________________________________________________
consensus             GGGTTATTTTATTCCATTTCTAGTGGTGTCTGTAATTTGGTTACTCCCCGTATGGTATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007D11+          TAACAAGCTGCGATTATGTGTAATGTCCTGTAATTGGTCATGCACTCACTTCACAAGTCA
rJMFF017K16+          TAACAAGCTGCGATTATGTGTAATGTCCTGTAATTGGTCATGCACTCACTTCACAAGTCA
rJMSF009B07+          TAACAAGCTGCGATTATGTGTAATGTCCTGTAATTGGTCATGCACTCACTTCACAAGTCA
rJMFF037H18+          TAACAAGCTGCGATTATGTGTAATGTCCTGTAATTGGTCATGCACTCACTTCACAAGTCA
rJMSF014K09+          TAACAAGCTGCGATTATGTGTAATGTCCTGTAATTGGTCATGCACTCACTTCACAAGTCA
rJMFF011A20+          TAACAAGCTGCGATTATGTGTAATGTCCTGTAATTGGTCATGCACTCACTTCACAAGTCA
JMFN028J17-           TAACAAGCTGCGATTATGTGCAATGTCCTGTAATTGGTCATGCACTCACTTCACAAGTCA
rJMSF016K07+          TAACAAGCTGCGANTATGTGTAANGTCCTNTAANTGGTCATGCACTCACTTCACAAGTCA
rJMSF015I11+          TAACAAGCTGCGATTATGTGTAATGTCCTGTAATTGGTCATGCACTCACTTCACAAGTCA
rJMSF021M09+          TAACAAGCTGCGATTATGTGTAATGTCCTGTAATTGGTCATGCACTCACTTCACAAGTCA
rJMSF014L09+          TAACAAGCTGCGATTATGTGTAATGTCCTGTAATTGGTCATGCACTCACTTCACAAGTCA
rJMSF049P11+          TAACAAGCTGCGATTATGTGTAATGTCCTGTAATTGGTCATGCACTCACTTCACAAGTCA
rJMSF012F19+          TAACAAGCTGCGATTATGTGTAATGTCCTGTAATTGGTCATGCACTCACTTCACAAGTCA
                      ____________________________________________________________
consensus             TAACAAGCTGCGATTATGTGTAATGTCCTGTAATTGGTCATGCACTCACTTCACAAGTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007D11+          -CAAGTACTCAATCCCTAAGTAGTCATATGGG                            
rJMFF017K16+          -CAAGTACTCAATCCCTAAGTAGTCATATGGGTAATGCTT                    
rJMSF009B07+          -CAAGTACTCAATCCCTAAGTAGTCATATGGGTAATGCTT                    
rJMFF037H18+          -CAAGTACTCAATCCCTAAGTAGTCATATGGGTAATGCTTTGTCTGTCTTTTGTTAAAA 
rJMSF014K09+          -CAAGTACTCAATCCCTAAGTAGTCATATGGGTAATGCNTTGTCTGTCTTCTGTTAAAAA
rJMFF011A20+          -CAAGTACTCAATCCCTAAGTAGTCATATGGGTAATGCTTTGTCTGTCTT          
JMFN028J17-           -CAAGTACTCAATCCCTAAGTAGTCATATGGGTAATGCTTTGTCTGTCTTTTGTTAAAAA
rJMSF016K07+          NCAAGCACTCAATCCCNAAGTAGTCATATG                              
rJMSF015I11+          -CAAGTACTCAATCCCTAAGTAGTCATATGGGTAATGCTTTGTCTGTCTTTTGTTAAAAA
rJMSF021M09+          -CAAGTACTCAATCCCTAAGTAGTCATATGGGTAATGCTTTGTCTGTCTTTTGTAAAAA 
rJMSF014L09+          -CAAGTACTCAATCCCTAAGTAGTCATATGGGTAATGCTTTGTCTGTCTTTTGTTAAAAA
rJMSF049P11+          -CAAGTACTCAATCCCTAAGTAGTCATATGGGTAATGCTTTGTCTGTCTTT         
rJMSF012F19+          -CAAGTACTCAATCCCTAAGTAGTCATATGGGTAATGCTTTGTCTGTCCTTTGTTAAAAA
                      ____________________________________________________________
consensus             -CAAGTACTCAATCCCTAAGTAGTCATATGGGTAATGCTTTGTCTGTCTTTTGTTAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF014K09+          TGAATGTTTTTGTCGTTTGAC                                       
JMFN028J17-           TGAATGTTTTTGTCGTTTGACTGTGTTCTTCTCT                          
rJMSF015I11+          TGAATGTTTTTGTCGTTTGACTGTGTTCTTCTCT                          
rJMSF014L09+          TGAATGTTTTTGTCGTTTGACTGTGTTCTTCTCTAAATGGT                   
rJMSF012F19+          TGAATGTTTTTGTCGTTTGACTGTGTTCTTCTCTAAATGGTGTGTAGTGGTTGTTGAGAT
                      ____________________________________________________________
consensus             TGAATGTTTTTGTCGTTTGACTGTGTTCTTCTCTAAATGGTGTGTAGTGGTTGTTGAGAT