Contig 007059:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004O05Sequence262005885 (5)emb|CBI15515.3|1e-04unnamed protein product [Vitis vinifera]213007059 (3)
JMSF012F01Sequence270010480 (4)659007059 (3)ref|XP_011085536.1|7e-69PREDICTED: BTB/POZ domain-containing protein At3g50780-like [Sesamum indicum] r
JMSF050F11Sequence643010480 (4)ref|XP_002275454.1|2e-20PREDICTED: BTB/POZ domain-containing protein At3g50780 [Vitis vinifera] emb|CBI789007059 (3)ref|XP_009776607.1|8e-100PREDICTED: BTB/POZ domain-containing protein At3g50780 [Nicotiana sylvestris] r

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050F11+           CGAACGAGCTGCAGAACCCGAGCTTAGCAACAGCTCGAGTCCGAAGCAGANTGCCTTAC
                      ____________________________________________________________
consensus              CGAACGAGCTGCAGAACCCGAGCTTAGCAACAGCTCGAGTCCGAAGCAGANTGCCTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050F11+          AGGCCGATAACCTCACGTGGATGCTCGAGATGTTAAGCGACAGGCAAGCGGCCGACGGGT
                      ____________________________________________________________
consensus             AGGCCGATAACCTCACGTGGATGCTCGAGATGTTAAGCGACAGGCAAGCGGCCGACGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050F11+          TTGCAACGTTGTGGGCTAGCCAGCAAGAGCTGGCTTCGCTGCACCCGAGGCTCCCCACTA
                      ____________________________________________________________
consensus             TTGCAACGTTGTGGGCTAGCCAGCAAGAGCTGGCTTCGCTGCACCCGAGGCTCCCCACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050F11+          TCGCCCGCCACCACGTCAGCTGCATCACGGCGAGGCTGTTCGTCGGGATAGGCAGAGGCG
rJMSF012F01+           CGCCCGCCACCACGTCAGCTGCATCACGGCGAGGCTGTTCGTCGGGATAGGCAGAGGCG
                      ____________________________________________________________
consensus             TCGCCCGCCACCACGTCAGCTGCATCACGGCGAGGCTGTTCGTCGGGATAGGCAGAGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050F11+          AGATCCTTCCCTCGAAGGACACCCGCCATCTCCTGTTGCAAACGTGGTTGCAGCCGTTGA
rJMSF012F01+          AGATCCTTCCCTCGAAGGACACCCGCCATCTCCTGTTGCAAACGTGGTTGCAGCCGTTGA
                      ____________________________________________________________
consensus             AGATCCTTCCCTCGAAGGACACCCGCCATCTCCTGTTGCAAACGTGGTTGCAGCCGTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050F11+          TAAACGACTACAGCTGGCTACAACACAGCAGCAGATCGTTCGACAGGAAGGTCGTCGAGG
rJMSF012F01+          TAAACGACTACAGCTGGCTACAACACAGCAGCAGATCGTTCGACAGGAAGGTCGTCGAGG
                      ____________________________________________________________
consensus             TAAACGACTACAGCTGGCTACAACACAGCAGCAGATCGTTCGACAGGAAGGTCGTCGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050F11+          AAGGGATCGGGAGGACAATCCTGACGCTCCCTCTCGAGGAGCAGCAGAGCATTCTGCTGT
rJMSF012F01+          AAGGGATCGGGAGGACAATCCTGACGCTCCCTCTCGAGGAGCAGCAGAGCATTCTGCTGT
                      ____________________________________________________________
consensus             AAGGGATCGGGAGGACAATCCTGACGCTCCCTCTCGAGGAGCAGCAGAGCATTCTGCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050F11+          CTTGGCTCGACACGTTTCTCAAGGCGGGCGATAACTGCCCGAATCTCCAGAGAGCCTTTG
rJMSF012F01+          CTTGGCTCGACACGTTTCTCAAGGCGGGCGATAACTGCCCGAATCTCCAGAGAGCCTTTG
                      ____________________________________________________________
consensus             CTTGGCTCGACACGTTTCTCAAGGCGGGCGATAACTGCCCGAATCTCCAGAGAGCCTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050F11+          AAGTGTGGTGGCGCCGCACTTTCATCAGACCCTATACCGAAGCAGAAAGCATCGGCCAAA
rJMSF004O05+                                                 AAGCAGAAAGCATCGGCCAAA
rJMSF012F01+          AAGTGTGGTGGCGCCGCACTTTCATCAGACCCTATACCGAAGCAGAAAGCATCGGCCAAA
                      ____________________________________________________________
consensus             AAGTGTGGTGGCGCCGCACTTTCATCAGACCCTATACCGAAGCAGAAAGCATCGGCCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050F11+          CGGGAAACTCTGCAGGGCCACAGGTGTTACACCCGGTATCTGAAAACCAAGAAAGAAGTG
rJMSF004O05+          CGGGAANCTCTGCAGGGCCACAGGTGTTACACCCGGTATNTGAAAACCAAGAAAGAAGTG
rJMSF012F01+          CGGGAAACTCTGCAGGGCCACAGGTGTTACACCCGGTATCTGAAAACCAAGAAAGAAGTG
                      ____________________________________________________________
consensus             CGGGAAACTCTGCAGGGCCACAGGTGTTACACCCGGTATCTGAAAACCAAGAAAGAAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050F11+          AAGAATTGTAAATCTGGCTACCACCCGACTATCAACTGAGCTACCCGTGCTGGACTATCA
rJMSF004O05+          AAGAANTGTAAATNTGGCTACCACCCGANTATCAANTGAGCTNCCCGTGNTGGACTATCA
rJMSF012F01+          AAGAATTGTAAATCTGGCTACCACCCGACTATCAACTGAGCTACCCGTGCTGGACTATCA
                      ____________________________________________________________
consensus             AAGAATTGTAAATCTGGCTACCACCCGACTATCAACTGAGCTACCCGTGCTGGACTATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050F11+          ACTGAGCTACCCGTGCGGGTTTCATTACATGACGACCAACAATGTTGTTGTATGATTGAG
rJMSF004O05+          ACTGAGCTACCCGTGCGGGTTTCATTACATGACGACCAACAATGTTGNTGTATGA     
rJMSF012F01+          ACTGAGCTACCCGTGCGGGTTTCATTACATGACGACCAACAATGTTGTTGTATGATTGAG
                      ____________________________________________________________
consensus             ACTGAGCTACCCGTGCGGGTTTCATTACATGACGACCAACAATGTTGTTGTATGATTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050F11+          GTTTAATTGCTTATTGAATGTATGTATTTAGATGTATCTTAAAAGGGATGTAATACATGT
rJMSF012F01+          GTTTAATTGCTTATTGAATGTATGTATTTAGATGTATCTTAAAAGGGATGTAATACATGT
                      ____________________________________________________________
consensus             GTTTAATTGCTTATTGAATGTATGTATTTAGATGTATCTTAAAAGGGATGTAATACATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF050F11+          CTCATTGGTG                                                  
rJMSF012F01+          CTCATTGGTGTGTTTTCTGTCATCCTAAGGTTGTTTAATGTAGTCTGAGTTTTGACTCTA
                      ____________________________________________________________
consensus             CTCATTGGTGTGTTTTCTGTCATCCTAAGGTTGTTTAATGTAGTCTGAGTTTTGACTCTA