Contig 007053:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN043I03Sequence640007053 (2)ref|XP_007017100.1|1e-56Leucine-rich repeat protein kinase family protein [Theobroma cacao] gb|EOY34719
JMSF011C18Sequence302023143637007053 (2)gb|KDO54913.1|8e-47hypothetical protein CISIN_1g005693mg [Citrus sinensis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043I03-                                                     CCGTTCAATCACCTGGCC
                      ____________________________________________________________
consensus                                                       CCGTTCAATCACCTGGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043I03-           GTGATGATATGGTTGATCTCCCGAGGTGGGTTCAGTCGGTGGTTAGGGAAGAGTGGACTG
rJMSF011C18+                                 AGGTGGGTTCAGTCGGTGGTTAGGGAAGAGTGGACTG
                      ____________________________________________________________
consensus             GTGATGATATGGTTGATCTCCCGAGGTGGGTTCAGTCGGTGGTTAGGGAAGAGTGGACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043I03-           CAGAAGTCTTTGATGTTGAACTGATGAGGTTTCAAAACATTGAAGAAGAGATGGTGCAGA
rJMSF011C18+          CAGAAGTCTTTGATGTTGAACTGATGAGGTTTCAAAACATTGAAGAAGAGATGGTGCAGA
                      ____________________________________________________________
consensus             CAGAAGTCTTTGATGTTGAACTGATGAGGTTTCAAAACATTGAAGAAGAGATGGTGCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043I03-           TGCTGCAAATTGGCATGGCGTGCGTTGTAAGGGTTCCAGATATGCGACCCAGCATGGATG
rJMSF011C18+          TGCTGCAAATTGGCATGGCGTGCGTTGTAAGGGTTCCAGATATGCGACCCAGCATGGATG
                      ____________________________________________________________
consensus             TGCTGCAAATTGGCATGGCGTGCGTTGTAAGGGTTCCAGATATGCGACCCAGCATGGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043I03-           AAGTTGTTCGGATGATCGAAGAGGTCAGGCAATCTGACTCTGAAAACCGGCCATCTTCTG
rJMSF011C18+          AAGTTGTTCGGATGATCGAAGAGGTCAGGCAATCTGACTNTGAAAACCGGCCATCTTNTG
                      ____________________________________________________________
consensus             AAGTTGTTCGGATGATCGAAGAGGTCAGGCAATCTGACTCTGAAAACCGGCCATCTTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043I03-           AAGAGAACAAATCTAAGGACTCAAATGTGCAGACCCCTTGATTCTTTGGACATGTTCATT
rJMSF011C18+          AAGAGAACAAATNTAAGGACTCAAATGTGCAGACCCCTTGATTCTTTGGACATGTTCATT
                      ____________________________________________________________
consensus             AAGAGAACAAATCTAAGGACTCAAATGTGCAGACCCCTTGATTCTTTGGACATGTTCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043I03-           CTCCTGTTTCTGAGTTCTGACCTGTAAGTTGTGGAAGTCGTTTCGTTTCGTTCTAATTCA
rJMSF011C18+          CTCCTGTTTCTGAGTTNTGACCTGTAAGTTGTGGAAGTCGTTTCGTTTCGTTCTAATTCA
                      ____________________________________________________________
consensus             CTCCTGTTTCTGAGTTCTGACCTGTAAGTTGTGGAAGTCGTTTCGTTTCGTTCTAATTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043I03-           ATTCAAAGGCCCATTGGCGAATTCATGGTGTATATGCTCAGTGAAGTGAGGATTTGGAGA
rJMSF011C18+          ATTCAAAGGCCCNTTGGCGAATTCATGGNGTATATGCTCAGTGAAGTGAGGATTTGGAGA
                      ____________________________________________________________
consensus             ATTCAAAGGCCCATTGGCGAATTCATGGTGTATATGCTCAGTGAAGTGAGGATTTGGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043I03-           CTGAATTTACTGATTGATTTTCCTTTTAATTTCTTAGACAGTTTAGCCATTCATCATCAA
rJMSF011C18+          CTGAATTTACTGATTGATTTTCCTTTTAATTTCTTAGACAGTTTAGCCATTCATCATCAA
                      ____________________________________________________________
consensus             CTGAATTTACTGATTGATTTTCCTTTTAATTTCTTAGACAGTTTAGCCATTCATCATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043I03-           TCATCATTACCTTGTTCAGAATTGCCTTTGCTTTCATCATCATTTGTTGTAAAACCCCAT
rJMSF011C18+          TCATCATTACCTTGTTCAGAATTGCCTTTGCTTTCATCATCATTTGTTGTAAAACCCCNT
                      ____________________________________________________________
consensus             TCATCATTACCTTGTTCAGAATTGCCTTTGCTTTCATCATCATTTGTTGTAAAACCCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043I03-           TGTAGAAAACCATCAACAGCTGATTGATGATCTTTTCTCTAGAGTCCTTTTGANCAGAAA
rJMSF011C18+          TGTAGAAAACCATCAACAGCTGATTGATGATCTTTTCTCTAGAGTCCTTTTGACAAGAAA
                      ____________________________________________________________
consensus             TGTAGAAAACCATCAACAGCTGATTGATGATCTTTTCTCTAGAGTCCTTTTGACCAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN043I03-           TGTTG                                                       
rJMSF011C18+          TGTTGGNGCAACNTTATTTTTTTTTTCCAGTAATAACTCATTTTATTGGAAAGGAATCAA
                      ____________________________________________________________
consensus             TGTTGGNGCAACNTTATTTTTTTTTTCCAGTAATAACTCATTTTATTGGAAAGGAATCAA