Contig 007048:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035D13Sequence601007048 (6)ref|XP_009602792.1|9e-54PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon
JMFN017E24Sequence624007048 (6)ref|XP_002275650.1|8e-57PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon
JMSF002C11Sequence275002125 (4)676007048 (6)ref|XP_009602792.1|3e-54PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon
JMSF010F08Sequence353002125 (4)778007048 (6)ref|XP_002275650.1|2e-39PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon
JMSF020M17Sequence699007048 (6)ref|XP_002275650.1|2e-50PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon783007048 (6)ref|XP_002275650.1|2e-56PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon

Alignment

This contig is upended


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JMSF020M17-                                           GGGAGGCCTAGAGCCGGCACACCGCCAG
                      ____________________________________________________________
consensus                                             GGGAGGCCTAGAGCCGGCACACCGCCAG
 
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JMSF020M17-           TCCGCTATCCGCCACGGTGCCGTCTACCACAGTGATCGCACACCACCATTCTGCCATAGC
                      ____________________________________________________________
consensus             TCCGCTATCCGCCACGGTGCCGTCTACCACAGTGATCGCACACCACCATTCTGCCATAGC
 
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JMSF020M17-           CAACAGTACTACAGTCTACACTCTACAGGCAGCATGCTACAGTAGTCAGCACTCACTCCA
                      ____________________________________________________________
consensus             CAACAGTACTACAGTCTACACTCTACAGGCAGCATGCTACAGTAGTCAGCACTCACTCCA
 
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JMSF020M17-           TTTAGCCACTCGCAACGACCATACGCCAGACGCTGTCGTCAGACTCCAGTGATCAATCGC
                      ____________________________________________________________
consensus             TTTAGCCACTCGCAACGACCATACGCCAGACGCTGTCGTCAGACTCCAGTGATCAATCGC
 
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JMSF020M17-           CATCTTCATCGCAGCTTGCAGCTCGCACAGTCACACTGACGCACTCTCGGTCTATCGCAA
rJMSF020M17+                CATCGCAGCNTGCAGCTCGCACAGTCACACTGACGCACTCTCGGTCTATCGCAA
                      ____________________________________________________________
consensus             CATCTTCATCGCAGCTTGCAGCTCGCACAGTCACACTGACGCACTCTCGGTCTATCGCAA
 
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JMSF020M17-           GAGTCTCAGAAACACTGTAATAACAACAATGGGAAGTAGAACATTGCTTTCTCTGTGTCC
JMFN017E24-                  AGAAACACTGTAATAACAACAATGGGAAGTAGAACATTGCTTTCTCTGTGTCC
rJMSF020M17+          GAGTCTCAGAAACACTGTAATAACANCAATGGGAAGTAGAACATTGCTTTCTCTGTGTCC
rJMSF010F08+                 AGAAACACTGTAATANCANCAATGGGAAGTAGAACATTGCTTTCTCTGTGTCC
                      ____________________________________________________________
consensus             GAGTCTCAGAAACACTGTAATAACAACAATGGGAAGTAGAACATTGCTTTCTCTGTGTCC
 
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JMSF020M17-           AACAATGGCAACTGCTGCTACCTTCAACCGGATACGAATTGTTTTTCGGACACAGCCATT
rJMFF035D13+                                    ACCGGATACGAATTGTTTTTCGGACACAGCCATT
JMFN017E24-           AACAATGGCAACTGCTGCTACCTTCAACCGGATACGAATTGTTTTTCGGACACAGCCATT
rJMSF020M17+          AACAATGGCAACTGCTGCTACCTTCAACCGGATACGAATTGTTTTTCGGACACAGCCATT
rJMSF002C11+                                                      TTCGGACACAGCCATT
rJMSF010F08+          AACAATGGCAACTGCTGCTACCTTCAACCGGATACGAATTGTTTTTCGGACACAGCCATT
                      ____________________________________________________________
consensus             AACAATGGCAACTGCTGCTACCTTCAACCGGATACGAATTGTTTTTCGGACACAGCCATT
 
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JMSF020M17-           CGGGTTGAGGCAGGTGCCCCGCCGGAGCTACTCCACGAAAGCGAATAGTGCTCTTCAGCC
rJMFF035D13+          CGGGTTGAGGCAGGTGCCCCGCCGGAGCTACTCCACGAAAGCGAATAGTGCTCTTCAGCC
JMFN017E24-           CGGGTTGAGGCAGGTGCCCCGCCGGAGCTACTCCACGAAAGCGAATAGTGCTCTTCAGCC
rJMSF020M17+          CGGGTTGAGGCAGGTGCCCCGCCGGAGCTACTCCACGAAAGCGAATAGTGCTCTTCAGCC
rJMSF002C11+          CGGGTTGAGGCAGGTGCCCCGCCGGAGCTACTCCACGAAAGCGAATAGTGCTCTTCAGCC
rJMSF010F08+          CGGGTTGAGGCAGGTGCCCCGCCGGAGCTACTCCACGAAAGCGAATAGTGCTCTTCAGCC
                      ____________________________________________________________
consensus             CGGGTTGAGGCAGGTGCCCCGCCGGAGCTACTCCACGAAAGCGAATAGTGCTCTTCAGCC
 
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JMSF020M17-           CCCTGATGTCCCTCGTTTGGCCGAAACAGCTCGGATTTCTCTCACCCCAACTGAGGTTGA
rJMFF035D13+          CCNTGATGTCCCTCGTTTGGCCGAAACAGCTCGGATTTCTCTCACCCCAACTGAGGTTGA
JMFN017E24-           CCCTGATGTCCCTCGTTTGGCCGAAACAGCTCGGATTTCTCTCACCCCAACTGAGGTTGA
rJMSF020M17+          CCCTGATGTCCCTCGTTTGGCCGAAACAGCTCGGATTTCTCTCACCCCAACTGAGGTTGA
rJMSF002C11+          CCCTGATGTCCCTCGTTTGGCCGAAACAGCTCGGATTTCTCTCACCCCAACTGAGGTTGA
rJMSF010F08+          CCCTGATGTCCCTCGTTTGGCCGAAACAGCTCGGATTTCTCTCACCCCAACTGA-GTTGA
                      ____________________________________________________________
consensus             CCCTGATGTCCCTCGTTTGGCCGAAACAGCTCGGATTTCTCTCACCCCAACTGAGGTTGA
 
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JMSF020M17-           AGAATTCGGTCTAAAAATTCGACAAGTGATAGACTGGTTTGGTCAACTTCAAGCCGTAGA
rJMFF035D13+          AGAATTCGGTCTAAAAATTCGACAAGTGATAGACTGGTTTGGTCAACTTCAAGCCGTAGA
JMFN017E24-           AGAATTCGGTCTAAAAATTCGACAAGTGATAGACTGGTTTGGTCAACTTCAAGCCGTAGA
rJMSF020M17+          AGAATTCGGTCTAAAAATTCGACAAGTGATAGACTGGTTTGGTCAACTTCAAGCCGTAGA
rJMSF002C11+          AGAATTCGGTCTAAAAATTCGACAAGTGATAGACTGGTTTGGTCAACTTCAAGCCGTAGA
rJMSF010F08+          AGAATTCGGTCTAAAAATTCGACAAGTGATAGACTGGTTTGGTCAACTTCAAGCCGTAGA
                      ____________________________________________________________
consensus             AGAATTCGGTCTAAAAATTCGACAAGTGATAGACTGGTTTGGTCAACTTCAAGCCGTAGA
 
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JMSF020M17-           TCTTCAAAGTATTGAGCCAGCTATTAGGGCAGATACTGAAGGTGACAACTTGCGAGATGA
rJMFF035D13+          TCTTCAAAGTATTGAGCCAGCTATTAGGGCAGATACTGAAGGTGACAACTTGCGAGATGA
JMFN017E24-           TCTTCAAAGTATTGAGCCAGCTATTAGGGCAGATACTGAAGGTGACAACTTGCGAGATGA
rJMSF020M17+          TCTTCAAAGTATTGAGCCAGCTATTAGGGCAGATACTGAAGGTGACAACTTGCGAGATGA
rJMSF002C11+          TCTTCAAAGTATTGAGCCAGCTATTAGGGCAGATACTGAAGGTGACAACTTGCGAGATGA
rJMSF010F08+          TCTTCAAAGTATTGAGCCAGCTATTAGGGCAGATACTGAAGGTGACAACTTGCGAGATGA
                      ____________________________________________________________
consensus             TCTTCAAAGTATTGAGCCAGCTATTAGGGCAGATACTGAAGGTGACAACTTGCGAGATGA
 
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JMSF020M17-           TTTTCCTGAAATTTTTGAAAATAGGGAAGCCATGATAGCTGCTGTGCCAAGCTATGAGGA
rJMFF035D13+          TTTTCNTGAAATTTTTGAAAATAGGGAAGCCATGATAGCTGCTGTGCCAAGCTATGAGGA
JMFN017E24-           TTTTCCTGAAATTTTTGAAAATAGGGAAGCCATGATAGCTGCTGTGCCAAGCTATGAGGA
rJMSF020M17+          TTTTCCTGAAATTTTTGAAAATAGGGAAGCCATGATAGCTGCTGTGCCAAGCTATGAGGA
rJMSF002C11+          TTTTCCTGAAATTTTTGAAAATAGGGAAGCCATGATAGCTGCTGTGCCAAGCTATGAGGA
rJMSF010F08+          TTTTCCTGAAATTTTTGAAAATAGGGAAGCCATGATAGCTGCTGTGCCAAGCTATGAGGA
                      ____________________________________________________________
consensus             TTTTCCTGAAATTTTTGAAAATAGGGAAGCCATGATAGCTGCTGTGCCAAGCTATGAGGA
 
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JMSF020M17-           GCCTTACATCA                                                 
rJMFF035D13+          GCCTTACATCAAAGTTCCCAAAGTGTTGAACAAGGAGTAATATGTTCAGGGCTTACTAAT
JMFN017E24-           GCCTTACATCAAAGTTCCCAAAGTGTTGAACAAGGAGTAATATGTTCAGGGCTTACTAAT
rJMSF020M17+          GCCTTACATCAAAGTTCCCAAAGTGTTGAACAAGGAGTAATATGTTCAGGGCTTACTAAT
rJMSF002C11+          GCCTTACATCAAAGTTCCCAAAGTGTTGAACAAGGAGTAATATGTTCAGGGCTTACTAAT
rJMSF010F08+          GCCTTACATCAAAGTTCCCAAAGTGTTGAACAAGGAGTAATATGTTCAGGGCTTACTAAT
                      ____________________________________________________________
consensus             GCCTTACATCAAAGTTCCCAAAGTGTTGAACAAGGAGTAATATGTTCAGGGCTTACTAAT
 
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rJMFF035D13+          CAATTGTAGGCCTTCACCCTCTCCATTCCCATCTAATTGGCTTAAAAATCCAAAAACCGC
JMFN017E24-           CAATTGTAGGCCTTCACCCTCTCCATTCCCATCTAATTGGCTTAAAAATCCAAAAACCGC
rJMSF020M17+          CAATTGTAGGCCTTCACCCTCTCCATTCCCATCTAATTGGCTTAAAAATCCAAAAACCGC
rJMSF002C11+          CAATTGTAGGCCTTCACCCTCTCCATTCCCATCTAATTGGCTTAAAAATCCAAAAACCGC
rJMSF010F08+          CAATTGTAGGCCTTCACCCTCTCCATTCCCATCTAATTGGCTTAAAAATCCAAAAACCGC
                      ____________________________________________________________
consensus             CAATTGTAGGCCTTCACCCTCTCCATTCCCATCTAATTGGCTTAAAAATCCAAAAACCGC
 
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rJMFF035D13+          CAGCAGCTTTCCATTTCATTCTTGTTTTAAATTTCTTCTCTGCATTTTGTTCCTTGAGGG
JMFN017E24-           CAGCAGCTTTCCATTTCATTCTTGTTNTAAATTTCTTCTCTGCATTTTGTTCCTTG    
rJMSF020M17+          CAGCAGCTTTCCATTTCATTCTTGTTTTAAATTTCTTCTCTGCATTTTGTTCCTTGAGGG
rJMSF002C11+          CAGCAGCTTTCCATTTCATTCTTGTTTTAAATTTCTTCTCTGCATTTTGTTCCTTGAGGG
rJMSF010F08+          CAGCAGCTTTCCATTTCATTCTTGTTTTAAATTTCTTCTCTGCATTTTGTTCCTTGAGGG
                      ____________________________________________________________
consensus             CAGCAGCTTTCCATTTCATTCTTGTTTTAAATTTCTTCTCTGCATTTTGTTCCTTGAGGG
 
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rJMFF035D13+          ACTGGGCGTTGCCCCAGATTCCCATATTCATTCTGAGCTTTGCATCATGGACAAGGAGGT
rJMSF020M17+          ACTGGGCGTTGCCCCAGATTCCCATATTCATTCTGAGCTTTGCATCATGGACAAGGAGGT
rJMSF002C11+          ACTGGGCGTTGCCCCAGATTCCCATATTCATTCTGAGCTTTGCATCATGGACAAGGAGGT
rJMSF010F08+          ACTGGGCGTTGCCCCAGATTCCCATATTCATTCTGAGCTTTGCATCATGGACAAGGAGGT
                      ____________________________________________________________
consensus             ACTGGGCGTTGCCCCAGATTCCCATATTCATTCTGAGCTTTGCATCATGGACAAGGAGGT
 
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rJMFF035D13+          TTCTATATTTTGGTGGAGTGAGCAATT                                 
rJMSF020M17+          TTCTATATTTTGGTGGAGTGAGCAATTGATATGAATACTATTATGTAGTAACAATTGCAC
rJMSF002C11+          TTCTATATTTTGGTGGAGTGAGCAATTGATATGAATACTATTATGTAGTAACAATTGCAC
rJMSF010F08+          TTCTATATTTTGGTGGAGTGAGCAATTGATATGAATACTATTATGTAGTAACAATTGCAC
                      ____________________________________________________________
consensus             TTCTATATTTTGGTGGAGTGAGCAATTGATATGAATACTATTATGTAGTAACAATTGCAC
 
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rJMSF020M17+          AAAAATGCA                                                   
rJMSF002C11+          AAAAATGCATACTTGGCATGTAATGTTATGAATTTGCTACTTTTTCATGTAGGAAAAATG
rJMSF010F08+          AAAAATGCATACTTGGCATGTAATGTTATGAATTTGCTACTTTTTCATGTAGGAAAAATG
                      ____________________________________________________________
consensus             AAAAATGCATACTTGGCATGTAATGTTATGAATTTGCTACTTTTTCATGTAGGAAAAATG