| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF035G15 | Sequence | 578 | 002088 (5) | gb|AFU50380.1| | 9e-82 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform | 709 | 007047 (4) | gb|AFU50382.1| | 1e-105 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform |
| JMSF006G23 | Sequence | 251 | 002088 (5) | gb|AFU50380.1| | 4e-11 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform | 205 | 007047 (4) | gb|AFU50382.1| | 4e-35 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform |
| JMSF010E22 | Sequence | 310 | 002088 (5) | gb|AFU50380.1| | 1e-15 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform | 751 | 007047 (4) | gb|AFU50382.1| | 4e-123 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform |
| JMSF039B03 | Sequence | 637 | 002088 (5) | gb|AFU50380.1| | 4e-98 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform | 856 | 007047 (4) | gb|AFU50382.1| | 9e-145 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform |
This contig is upended
. : . : . : . : . : . :
rJMSF039B03+ CACTTATGAACCATTGGCTGATAACCCAACCCAATGTCCAG
____________________________________________________________
consensus CACTTATGAACCATTGGCTGATAACCCAACCCAATGTCCAG
. : . : . : . : . : . :
rJMSF039B03+ CTCCCCCGGCATGTACAACAAGCAGGAGAATGCCCGCGTCCCCATCATAGTCACCGGCAA
____________________________________________________________
consensus CTCCCCCGGCATGTACAACAAGCAGGAGAATGCCCGCGTCCCCATCATAGTCACCGGCAA
. : . : . : . : . : . :
rJMSF039B03+ TGACTTCTCCACCCTCTATGCTCCTCTCATCCGTGACGGCCGTATGGAGAAGTTCTACTG
rJMSF010E22+ TCCGTGACGGCCGTATGGAGAAGTTNTACTG
____________________________________________________________
consensus TGACTTCTCCACCCTCTATGCTCCTCTCATCCGTGACGGCCGTATGGAGAAGTTCTACTG
. : . : . : . : . : . :
rJMSF039B03+ GGCACCAACCCGGGAGGACAGAATCGGTGTTTGCAAGGGTATCTTCCGCACTGACGGTGT
rJMSF010E22+ GGCACCAACCCGGGAGGACAGAATCGGTGTTTGCAAGGGTATCTTCCGCACTGACGGTGT
____________________________________________________________
consensus GGCACCAACCCGGGAGGACAGAATCGGTGTTTGCAAGGGTATCTTCCGCACTGACGGTGT
. : . : . : . : . : . :
rJMSF039B03+ ACCAGATGAGCACGTTGTTAAGCTCGTTGACACCTTCCCCGGACAATCAATTGATTTCTT
rJMSF010E22+ ACCAGATGAGCACGTTGTTAAGCTCGTTGACACCTTCCCCGGACAATCAATTGATTTCTT
____________________________________________________________
consensus ACCAGATGAGCACGTTGTTAAGCTCGTTGACACCTTCCCCGGACAATCAATTGATTTCTT
. : . : . : . : . : . :
rJMSF039B03+ TGGTGCCCTGAGAGCAAGAGTGTATGATGATGAAGTGAGGAAGTTCATAGCATCCATTGG
rJMSF010E22+ TGGTGCCCTGAGAGCAAGAGTGTATGATGATGAAGTGAGGAAGTTCATAGCATCCATTGG
____________________________________________________________
consensus TGGTGCCCTGAGAGCAAGAGTGTATGATGATGAAGTGAGGAAGTTCATAGCATCCATTGG
. : . : . : . : . : . :
rJMSF039B03+ TGTAGATGCCGTGAATGAAAGACTGCTGAACTCTAGGGACGGCCCACCCAAATTCGATCA
rJMFF035G15+ CA
rJMSF010E22+ TGTAGATGCCGTGAATGAAAGACTGCTGAACTCTAGGGACGGCCCACCCAAATTCGATCA
____________________________________________________________
consensus TGTAGATGCCGTGAATGAAAGACTGCTGAACTCTAGGGACGGCCCACCCAAATTCGATCA
. : . : . : . : . : . :
rJMSF039B03+ GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
rJMFF035G15+ GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
rJMSF010E22+ GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
____________________________________________________________
consensus GCCAAAGATGACAATTGAGAAGCTTCTTCAATATGGATACATGCTTGTACAAGAACAAGA
. : . : . : . : . : . :
rJMSF039B03+ GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
rJMSF006G23+ AATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCNTTGGAGATGC
rJMFF035G15+ GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
rJMSF010E22+ GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
____________________________________________________________
consensus GAATGTTAAGAGAGTTCAATTAGCCGACAAGTACCTCAAAGAGGCTGCCCTTGGAGATGC
. : . : . : . : . : . :
rJMSF039B03+ AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
rJMSF006G23+ AAACGAAGATTCAATCAAGANTGGAAACTTNTATGGACAAGGAGCCCAGAGTGGTAATCT
rJMFF035G15+ AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
rJMSF010E22+ AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
____________________________________________________________
consensus AAACGAAGATTCAATCAAGAATGGAAACTTCTATGGACAAGGAGCCCAGAGTGGTAATCT
. : . : . : . : . : . :
rJMSF039B03+ TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
rJMSF006G23+ TAAGGTTCCTGAAGGNTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
rJMFF035G15+ TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
rJMSF010E22+ TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
____________________________________________________________
consensus TAAGGTTCCTGAAGGCTGCACTGATCCTCAAGCAAAAAACTTTGATCCAACGGCTAGGAG
. : . : . : . : . : . :
rJMSF039B03+ CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
rJMSF006G23+ CGATGATGGAACCTGCACGTACCAGG
rJMFF035G15+ CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
rJMSF010E22+ CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
____________________________________________________________
consensus CGATGATGGAACCTGCACGTACCAGGTTTAAGGTTACGACATCTGCGAAATCGTGTGTTA
. : . : . : . : . : . :
rJMSF039B03+ GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
rJMFF035G15+ GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
rJMSF010E22+ GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
____________________________________________________________
consensus GAACCCAAGATGTCAGACTGAAATACTACTCAGCGGACACATGCAAGAGTATAATGTTTT
. : . : . : . : . : . :
rJMSF039B03+ GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
rJMFF035G15+ GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
rJMSF010E22+ GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
____________________________________________________________
consensus GTGTCAATTGTATCATCTATCGGTTACTTTTCATAACAATTACTCTCCAGGTGTGGGACC
. : . : . : . : . : . :
rJMSF039B03+ TAGAAGCTAAAGATTTGTCTTTTATGGACAAAAT
rJMFF035G15+ TAGAAGCTAAAGATTTGTCTTTTATGGACAAAATTAAAGAATACAA
rJMSF010E22+ TAGAAGCTAAAGATTTGTCTTTTATGGACAAAATTAAAGAATACAATGAAAGGGTTGGGT
____________________________________________________________
consensus TAGAAGCTAAAGATTTGTCTTTTATGGACAAAATTAAAGAATACAATGAAAGGGTTGGGT