Contig 007042:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009K21Sequence303007042 (2)ref|XP_009342544.1|7e-13PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Pyrus x bret617007042 (2)ref|XP_002528763.1|2e-60transporter, putative [Ricinus communis] gb|EEF33585.1| transporter, putative [R

Alignment

This contig is upended


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JMSF009K21-                                                     CGGTCGGCCCGCAAATGA
rJMSF009K21+                                                      GTCGGCCCGCAAATGA
                      ____________________________________________________________
consensus                                                       CGGTCGGCCCGCAAATGA
 
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JMSF009K21-           ACACTGAACACCCAAATTCATCTTCTTTCTACATTTTTCCTGCGAAAAAACCGAGAAGCA
rJMSF009K21+          ACACTGAACACCCAAATTCATCTTCTTTCTACATTTTTCCTGCGAAAAAACCGAGAAGCA
                      ____________________________________________________________
consensus             ACACTGAACACCCAAATTCATCTTCTTTCTACATTTTTCCTGCGAAAAAACCGAGAAGCA
 
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JMSF009K21-           GCTTCAATCCTCTGCAAACACAAGTTAATCAGAAGCCTTAGTCGCCTTATTCTGTGTTCC
rJMSF009K21+          GCTTCAATCCTCTGCAAACACAAGTTAATCAGAAGCCTTAGTCGCCTTATTCTGTGTTCC
                      ____________________________________________________________
consensus             GCTTCAATCCTCTGCAAACACAAGTTAATCAGAAGCCTTAGTCGCCTTATTCTGTGTTCC
 
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JMSF009K21-           TCCTATATGAGCTGAGTTCATCATGGTGGATGTGCGTAGTTGTGGGAAGCTTGTTGCCTT
rJMSF009K21+          TCCTATATGAGCTGAGTTCATCATGGTGGATGTGCGTAGTTGTGGGAAGCTTGTTGCCTT
                      ____________________________________________________________
consensus             TCCTATATGAGCTGAGTTCATCATGGTGGATGTGCGTAGTTGTGGGAAGCTTGTTGCCTT
 
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JMSF009K21-           GGCAACTTTAGTCTCAGTTGGGATCGCGTTGCAAATACTGGCTTGTGCTTTGTTCAATAA
rJMSF009K21+          GGCAACTTTAGTCTCAGTTGGGATCGCGTTGCAAATACTGGCTTGTGCTTTGTTCAATAA
                      ____________________________________________________________
consensus             GGCAACTTTAGTCTCAGTTGGGATCGCGTTGCAAATACTGGCTTGTGCTTTGTTCAATAA
 
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JMSF009K21-           CTGGTGGCCAATGCTAACAGCAATAATGTATGTCATGCTTCCGAT               
rJMSF009K21+          CTGGTGGCCAATGCTAACAGCAATAATGTATGTCATGCTTCCGATGCCTTTGGTTTTCTT
                      ____________________________________________________________
consensus             CTGGTGGCCAATGCTAACAGCAATAATGTATGTCATGCTTCCGATGCCTTTGGTTTTCTT
 
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rJMSF009K21+          TGCGGGATCAGATGCTTCGTCTCTCTACTCTGCATCTGAAAACGGCTGGGTGGAAGCAAC
                      ____________________________________________________________
consensus             TGCGGGATCAGATGCTTCGTCTCTCTACTCTGCATCTGAAAACGGCTGGGTGGAAGCAAC
 
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rJMSF009K21+          TAAGTTCTTGACCGGAGCTTCAGCGGTTGGCAGCATCGCAATCCCAGTCATCTTAAAGCA
                      ____________________________________________________________
consensus             TAAGTTCTTGACCGGAGCTTCAGCGGTTGGCAGCATCGCAATCCCAGTCATCTTAAAGCA
 
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rJMSF009K21+          CGGTGGTGTGATCGGTTGGGGAGCCATGGCGATGGAACTCTCATCGTTCTTCGTTTTTGT
                      ____________________________________________________________
consensus             CGGTGGTGTGATCGGTTGGGGAGCCATGGCGATGGAACTCTCATCGTTCTTCGTTTTTGT
 
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rJMSF009K21+          TCTAGCTATTGTTTGTTACATTGTAACCGGTGACGATGGTAGCTACAATATACTTTGATC
                      ____________________________________________________________
consensus             TCTAGCTATTGTTTGTTACATTGTAACCGGTGACGATGGTAGCTACAATATACTTTGATC
 
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rJMSF009K21+          CCCCATTAATCTCCTGTTTTCCATGTATAAGATGTTCATGTGCCTCCATTCTTGTTGTTA
                      ____________________________________________________________
consensus             CCCCATTAATCTCCTGTTTTCCATGTATAAGATGTTCATGTGCCTCCATTCTTGTTGTTA