Contig 007041:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF009I03-                                 AGTTGCAAAACATCATTAGATTTTCCTTTGTTACTTGA
JMSF042L11-            GAGTTTTAGATTCTAACTGGCAGTTGCAAAACATCATTAGATTTTCCTTTGTTACTTGA
                      ____________________________________________________________
consensus              GAGTTTTAGATTCTAACTGGCAGTTGCAAAACATCATTAGATTTTCCTTTGTTACTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF009I03-           AATCAGAATAAAAAGACAAAGATTCCATTTTCTTGCAGGTACACTCGAAAGATTCTAAAG
JMSF042L11-           AATCAGAATAAAAAGACAAAGATTCCATTTTCTTGCAGGTACACTCGAAAGATTCTAAAA
                      ____________________________________________________________
consensus             AATCAGAATAAAAAGACAAAGATTCCATTTTCTTGCAGGTACACTCGAAAGATTCTAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF009I03-           TGGCAATGGCATTCTGTGCCACCTCAAAGCTCAACAGTACTCTCAACCCGGCGCTCTTCA
JMSF042L11-           TGGCAATGGCATTCTGTGCCACCTCAAAGCTCAACAGTACTCTCAACCCGGCGCTCTTCA
                      ____________________________________________________________
consensus             TGGCAATGGCATTCTGTGCCACCTCAAAGCTCAACAGTACTCTCAACCCGGCGCTCTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF009I03-           CCTCCACAAAGGACGCCGTCGTTATCCATGATCCGTTGAAGAGAGTAACGCCGGCGAGAA
JMSF042L11-           CCTCCACAAAGGACGCCGTCGTTATCCATGATCCGTTGAAGAGAGTAACGCCGGCGAGAA
                      ____________________________________________________________
consensus             CCTCCACAAAGGACGCCGTCGTTATCCATGATCCGTTGAAGAGAGTAACGCCGGCGAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF009I03-           CCTCCGGCGGCAGCATTCGAGTGGCGGC                                
JMSF042L11-           CCTCCGGCGGCAGCATTCGAGTGGCGGCGTCAGGAAGCGGAAGCGGCGCGCCGGCCGCGG
                      ____________________________________________________________
consensus             CCTCCGGCGGCAGCATTCGAGTGGCGGCGTCAGGAAGCGGAAGCGGCGCGCCGGCCGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042L11-           TGGAGGTTTACGAGGAAGGGCAGCTTGAGAGACCCCGGTGGAGCGGCGAAACGCCGCTGT
                      ____________________________________________________________
consensus             TGGAGGTTTACGAGGAAGGGCAGCTTGAGAGACCCCGGTGGAGCGGCGAAACGCCGCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042L11-           CTCGCTTTGTCGGAGCCCTCATTTCTTTCAAGCCTCTCTACTCTCTGCTTAAGATTGGCG
                      ____________________________________________________________
consensus             CTCGCTTTGTCGGAGCCCTCATTTCTTTCAAGCCTCTCTACTCTCTGCTTAAGATTGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042L11-           CCAGACAAGTCTTTATCAGCACAGCCGAGAAGACAAATATTCCATGGAGGGAAATGGCAA
                      ____________________________________________________________
consensus             CCAGACAAGTCTTTATCAGCACAGCCGAGAAGACAAATATTCCATGGAGGGAAATGGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042L11-           AGGAAATACTGGAATCAGATGTGTACAAAGAGATGGAAAGCATTCAGAATCAATCTCTTG
                      ____________________________________________________________
consensus             AGGAAATACTGGAATCAGATGTGTACAAAGAGATGGAAAGCATTCAGAATCAATCTCTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042L11-           AATACCCTGACTATTATCTCAGTCCTTTTCACGCTTATGACGAAGGGAATCTTTCCTGGC
                      ____________________________________________________________
consensus             AATACCCTGACTATTATCTCAGTCCTTTTCACGCTTATGACGAAGGGAATCTTTCCTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042L11-           TGGCAGCAGCAGAAGCCGAGCCTGCAACTATGGCAATGGAGTTGCGGGCAATACCTGATG
rJMSF042L11+                                                  GTTGCGGGCAATACCTGATG
                      ____________________________________________________________
consensus             TGGCAGCAGCAGAAGCCGAGCCTGCAACTATGGCAATGGAGTTGCGGGCAATACCTGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042L11-           CCAATT-CACTCGATGAAGCTTCCCAGG-TTGTACGAGGAAACTGGCTCGACGCTATTGA
rJMSF042L11+          CCAATTNCACTCGATGAAGCTTCCCAGGTTTGTACGAGGAAACTGGCTCGACGCTATTGA
rJMSF009I03+                                                               CTATTGA
                      ____________________________________________________________
consensus             CCAATTNCACTCGATGAAGCTTCCCAGGTTTGTACGAGGAAACTGGCTCGACGCTATTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042L11-           AAAACATCATAAGCAATATTCAGGATGTTTTGCAATCCGAGACATTCTTGATATTGGATG
rJMSF042L11+          AAAACATCATAAGCAATATTCAGGATGTTTTGCAATCCGAGACATTCTTGATATTGGATG
rJMSF009I03+          AAAACATCATAAGCAATATTCAGGATGTTTTGCAATCCGAGACATTCTTGATATTGGATG
                      ____________________________________________________________
consensus             AAAACATCATAAGCAATATTCAGGATGTTTTGCAATCCGAGACATTCTTGATATTGGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042L11-           CTCTATCGGTGTGAGCACCAGATGTCTAGCCAGTCGATATCCTTCTGCTAATCTCACTGG
rJMSF042L11+          CTCTATCGGTGTGAGCACCAGATGTCTAGCCAGTCGATATCCTTCTGCTAATCTCACTGG
rJMSF009I03+          CTCTATCGGTGTGAGCACCAGATGTCTAGCCAGTCGATATCCTTCTGCTAATCTCACTGG
                      ____________________________________________________________
consensus             CTCTATCGGTGTGAGCACCAGATGTCTAGCCAGTCGATATCCTTCTGCTAATCTCACTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF042L11-           AC                                                          
rJMSF042L11+          ACTTGATCTATCGCCTTACTTTCTTGCCGTTGCTCAGTTTAAGGAAAAGAATCGTGACAG
rJMSF009I03+          ACTTGATCTATCGCCTTACTTTCTTGCCGTTGCTCAGTTTAAGGAAAAGAATCGTGACAG
                      ____________________________________________________________
consensus             ACTTGATCTATCGCCTTACTTTCTTGCCGTTGCTCAGTTTAAGGAAAAGAATCGTGACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042L11+          AAAAACGAACCCTACACGCTGGATTCATGCGAATGGCGAAGACACTGGCTTGCCTTCAAA
rJMSF009I03+          AAAAACGAACCCTACACGCTGGATTCATGCGAATGGCGAAGACACTGGCTTGCCTTCAAA
                      ____________________________________________________________
consensus             AAAAACGAACCCTACACGCTGGATTCATGCGAATGGCGAAGACACTGGCTTGCCTTCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042L11+          ATCATTCGACCTCGTCTCCATTTCATATGTGTTTCATGAGTGCCCCGAGAGAGCAATTCG
rJMSF009I03+          ATCATTCGACCTCGTCTCCATTTCATATGTGTTTCATGAGTGCCCCGAGAGAGCAATTCG
                      ____________________________________________________________
consensus             ATCATTCGACCTCGTCTCCATTTCATATGTGTTTCATGAGTGCCCCGAGAGAGCAATTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042L11+          AAATGTAGTGAATGAGTCATTTCGGTTGCTTAGACCCGGAGGAACTTTTTCTGTTACAGA
rJMSF009I03+          AAATGTAGTGAATGAGTCATTTCGGTTGCTTAGACCCGGAGGAACTTTTTCTGTTACAGA
                      ____________________________________________________________
consensus             AAATGTAGTGAATGAGTCATTTCGGTTGCTTAGACCCGGAGGAACTTTTTCTGTTACAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042L11+          CAACTCGCCAAAATCGAAGAAACTGCAGGAATTACCACCCGTGCTGTTTACATTAATGAA
rJMSF009I03+          CAACTCGCCAAAATCGAAGAAACTGCAGGAATTACCACCCGTGCTGTTTACATTAATGAA
                      ____________________________________________________________
consensus             CAACTCGCCAAAATCGAAGAAACTGCAGGAATTACCACCCGTGCTGTTTACATTAATGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042L11+          GAGCACCGAGCCTTTTCTCGACGAATACTACTTGACTGATCTGGAAAGGGTGATGAGAGA
rJMSF009I03+          GAGCACCGAGCCTTTTCTCGACGAATACTACTTGACTGATCTGGAAAGGGTGATGAGAGA
                      ____________________________________________________________
consensus             GAGCACCGAGCCTTTTCTCGACGAATACTACTTGACTGATCTGGAAAGGGTGATGAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042L11+          AGCCGGGTTTGTTAATGTGCAGAGTGTCTTGACTGATCCAAGGCACAGAACTGTGACTGC
rJMSF009I03+          AGCCGGGTTTGTTAATGTGCAGAGTGTCTTGACTGATCCAAGGCACAGAACTGTGACTGC
                      ____________________________________________________________
consensus             AGCCGGGTTTGTTAATGTGCAGAGTGTCTTGACTGATCCAAGGCACAGAACTGTGACTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042L11+          CACTGTGCCTTACTGAAACATTTTTTTTTTCCTTTTTGGTTCAGAAAATTTTCACTGTTA
rJMSF009I03+          CNCTGTGCCTTACTGAAACATTTTTTTTTTCCTTTTTGGTTCAGAAAATTTTCACTGTTA
                      ____________________________________________________________
consensus             CACTGTGCCTTACTGAAACATTTTTTTTTTCCTTTTTGGTTCAGAAAATTTTCACTGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042L11+          TCTTCTCCCAGATTATTGAAACCTTAGATGCCATCATATAAATGTGGTGTGCTGAGAATG
rJMSF009I03+          TCTTCTCCCAGATTATTGAAACCTTAGATGCCATCATATAAATGTGGTGTGCTGAGAATG
                      ____________________________________________________________
consensus             TCTTCTCCCAGATTATTGAAACCTTAGATGCCATCATATAAATGTGGTGTGCTGAGAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF042L11+          AGATCTTTGAGCCTCTGACACACTATCCAT                              
rJMSF009I03+          AGATCTTTGAGCCTCTGACACACTATCCATTTTTTGTCAAAAGTAACTCATTCAAATGTT
                      ____________________________________________________________
consensus             AGATCTTTGAGCCTCTGACACACTATCCATTTTTTGTCAAAAGTAACTCATTCAAATGTT