Contig 007036:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008G05Sequence368010799 (4)ref|XP_007050704.1|7e-05Mitochondrial transcription termination factor family protein isoform 1 [Theobr777007036 (2)ref|XP_009628723.1|329PREDICTED: uncharacterized protein LOC104119034 [Nicotiana tomentosiformis]
JMSF034O07Sequence657010799 (4)ref|XP_007050704.1|8e-37Mitochondrial transcription termination factor family protein isoform 1 [Theobr565007036 (2)ref|XP_009628723.1|233PREDICTED: uncharacterized protein LOC104119034 [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008G05+            GAGAGNTTAGGAATTCCAATATTAGCCGTGGNCAAGGTTGATTGAGAAAGATCCACAC
                      ____________________________________________________________
consensus               GAGAGNTTAGGAATTCCAATATTAGCCGTGGNCAAGGTTGATTGAGAAAGATCCACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008G05+          ATTCTTGGATTTNGTCTAGAAGATAGAGTGAAACCAAATGTGCAATCTCTCCTACACTTC
                      ____________________________________________________________
consensus             ATTCTTGGATTTNGTCTAGAAGATAGAGTGAAACCAAATGTGCAATCTCTCCTACACTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF008G05+          AATGTCAGGCAAACATCACTCGCTTCAGTCATTGCCCAATATCCTGCAATTTTAGGAATG
                      ____________________________________________________________
consensus             AATGTCAGGCAAACATCACTCGCTTCAGTCATTGCCCAATATCCTGCAATTTTAGGAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O07+                          TACAAACTCAACAAAGTTTTCTCAGTTCACTTCTGGATATAAGC
rJMSF008G05+          AATCTCGAGGAAAAGCTACAAACTCAACAAAGTTTTCTCAGTTCACTTCTGGATATAAGC
                      ____________________________________________________________
consensus             AATCTCGAGGAAAAGCTACAAACTCAACAAAGTTTTCTCAGTTCACTTCTGGATATAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O07+          TCCGAGGACTNTGGTAGAGTTGTCGAGAAGATGCCACAGGCTGTGAGCCTCAACAACTCC
rJMSF008G05+          TCCGAGGACTTTGGTAGAGTTGTCGAGAAGATGCCACAGGCTGTGAGCCTCAACAACTCC
                      ____________________________________________________________
consensus             TCCGAGGACTTTGGTAGAGTTGTCGAGAAGATGCCACAGGCTGTGAGCCTCAACAACTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O07+          CCAACACGGAAGCATGTCGATTTCCTGAAGGCATGCGGTTTTTCCTCAGAACANCTGAAA
rJMSF008G05+          CCAACACGGAAGCATGTCGATTTCCTGAAGGCATGCGGTTTTTCCTCAGAACAACTGAAA
                      ____________________________________________________________
consensus             CCAACACGGAAGCATGTCGATTTCCTGAAGGCATGCGGTTTTTCCTCAGAACAACTGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O07+          AAGATGGTCGTCGGGTGCCCCCAATTACTCGCCTNGAATATNGACATCATGAANCAAAGT
rJMSF008G05+          AAGATGGTCGTCGGGTGCCCCCAATTACTCGCCTTGAATATCGACATCATGAAACAAAGT
                      ____________________________________________________________
consensus             AAGATGGTCGTCGGGTGCCCCCAATTACTCGCCTTGAATATCGACATCATGAAACAAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O07+          TTTGATTACTTCAAANCCACGATGGAGAGGCCNTTGGAGGACTTGGTTGATTTCCCCGCG
rJMSF008G05+          TTTGATTACTTCAAAACCACGATGGAGAGGCCATTGGAGGACTTGGTTGATTTCCCCGCG
                      ____________________________________________________________
consensus             TTTGATTACTTCAAAACCACGATGGAGAGGCCATTGGAGGACTTGGTTGATTTCCCCGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O07+          TTCTTCACATNCAGCCTCGAGTNCACCATAAAACCCAGACACCGAAGGATTGCAGCAAAG
rJMSF008G05+          TTCTTCACATACAGCCTCGAGTCCACCATAAAACCCAGACACCGAAGGATTGCAGCAAAG
                      ____________________________________________________________
consensus             TTCTTCACATACAGCCTCGAGTCCACCATAAAACCCAGACACCGAAGGATTGCAGCAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O07+          GGCTTAAAGTGTTCTCTCGCATGGATGCTCAACTGNTCAGACGCGAAATTCAAGGACCGG
rJMSF008G05+          GGCTTAAAGTGTTCTCTCGCATGGATGCTCAACTGCTCAGACGCGAAATTCAAGGACCGG
                      ____________________________________________________________
consensus             GGCTTAAAGTGTTCTCTCGCATGGATGCTCAACTGCTCAGACGCGAAATTCAAGGACCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O07+          ATGCATTATGACTCCATCGACATGGAAGAGATGGAATCGAGTCCTTCCTCCTTTGACATG
rJMSF008G05+          ATGCATTATGACTCCATCGACATGGAAGAGATGGAATCGAGTCCTTCCTCCTTTGACATG
                      ____________________________________________________________
consensus             ATGCATTATGACTCCATCGACATGGAAGAGATGGAATCGAGTCCTTCCTCCTTTGACATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O07+          AACAGCCTGATGCAACCCAGAAGCTACGATTCGGAATCTGAGTATGATGAAGATGAGCAG
rJMSF008G05+          AACAGCCTGATGCAACCCAGAAGCTACGATTCGGAATCTGAGTATGATGAAGATGA-CAG
                      ____________________________________________________________
consensus             AACAGCCTGATGCAACCCAGAAGCTACGATTCGGAATCTGAGTATGATGAAGATGAGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034O07+          TGACACTGATGATTNGTATAGACATTATTCTGTACAATATA                   
rJMSF008G05+          TGACACTGATGATTAGTATAGACATTATTCTGTACAATATATTCAATTATGTTATGTACC
                      ____________________________________________________________
consensus             TGACACTGATGATTAGTATAGACATTATTCTGTACAATATATTCAATTATGTTATGTACC