Contig 007035:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008D10Sequence263023129761007035 (2)ref|XP_009602623.1|4e-65PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like, partial [Nic
JMSF044F19Sequence824007035 (2)ref|XP_009802501.1|2e-151PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Nicotiana sylvest765009621 (14)ref|XP_009789910.1|5e-62PREDICTED: glucan endo-1,3-beta-glucosidase-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF044F19+                                                              GTGACTGGT
                      ____________________________________________________________
consensus                                                                GTGACTGGT
 
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JMSF044F19+           GATAGTCTCAAGGTTGAATACTATGAGAGGCTCTCACCCCTTGTCCCGTTAAAGGTTCCT
                      ____________________________________________________________
consensus             GATAGTCTCAAGGTTGAATACTATGAGAGGCTCTCACCCCTTGTCCCGTTAAAGGTTCCT
 
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JMSF044F19+           TTNGGGCTCTTTCTCCAATATACGGACTGGCGACTGCATTGCGGCCTTTTCACGTTCTAA
                      ____________________________________________________________
consensus             TTNGGGCTCTTTCTCCAATATACGGACTGGCGACTGCATTGCGGCCTTTTCACGTTCTAA
 
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JMSF044F19+           CATTTATATGTTTAAGAAACAAATTGAAAGTGGAGGAAAGCATCTTTGCTCTGTTGTTTA
                      ____________________________________________________________
consensus             CATTTATATGTTTAAGAAACAAATTGAAAGTGGAGGAAAGCATCTTTGCTCTGTTGTTTA
 
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JMSF044F19+           TGGTTCATTGCCACCAGAGACTCGGACCAGACAGGCAACAATGTTCAATGATGCAAACAG
                      ____________________________________________________________
consensus             TGGTTCATTGCCACCAGAGACTCGGACCAGACAGGCAACAATGTTCAATGATGCAAACAG
 
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JMSF044F19+           TGACTCTGATGTTCTGGTGGCAAGTGATGCGATTGGGATGGGTCTCAATCTTAACATATC
                      ____________________________________________________________
consensus             TGACTCTGATGTTCTGGTGGCAAGTGATGCGATTGGGATGGGTCTCAATCTTAACATATC
 
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JMSF044F19+           TAGAATAATCTTTTCTACATTACAAAAATTCGATGGCGTTGAAATGCGGGATCTGTCTGT
                      ____________________________________________________________
consensus             TAGAATAATCTTTTCTACATTACAAAAATTCGATGGCGTTGAAATGCGGGATCTGTCTGT
 
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JMSF044F19+           ACTTGAGATAAAACAGATTGCCGGAAGGGCAGGCAGGTATGGATCTAAGTATCCTGCTGG
                      ____________________________________________________________
consensus             ACTTGAGATAAAACAGATTGCCGGAAGGGCAGGCAGGTATGGATCTAAGTATCCTGCTGG
 
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JMSF044F19+           TGAAGTGACTTGTCTCTCTTCTAAGGATCTACCTTTACTTCATTCGGCACTGAATTCTCC
                      ____________________________________________________________
consensus             TGAAGTGACTTGTCTCTCTTCTAAGGATCTACCTTTACTTCATTCGGCACTGAATTCTCC
 
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JMSF044F19+           ATCTCCTATACTTGAGAAAGCTGGGCTATTTCCAAACTTTGACCTTCTATATATGTATTC
                      ____________________________________________________________
consensus             ATCTCCTATACTTGAGAAAGCTGGGCTATTTCCAAACTTTGACCTTCTATATATGTATTC
 
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JMSF044F19+           TCGTCTACACCCAAAGCATGGCCTATACGACATACTGGAACACTTTGTAGATAATGCAAA
                      ____________________________________________________________
consensus             TCGTCTACACCCAAAGCATGGCCTATACGACATACTGGAACACTTTGTAGATAATGCAAA
 
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JMSF044F19+           GTTGTCAGCGAATTATTTTATCTCTAATATTGAAGACTTGTTGAAAGTTGCTTCTATTAT
                      ____________________________________________________________
consensus             GTTGTCAGCGAATTATTTTATCTCTAATATTGAAGACTTGTTGAAAGTTGCTTCTATTAT
 
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JMSF044F19+           TGATGAGTTGCCGCTTAGTTTGCATGATAAGTATCTCTTTTGTATAAGTCCTGTTGATGT
rJMSF008D10+                             TTGCATGATAAGTATCTCTTTTGTATAAGTCCTGTTGATGT
                      ____________________________________________________________
consensus             TGATGAGTTGCCGCTTAGTTTGCATGATAAGTATCTCTTTTGTATAAGTCCTGTTGATGT
 
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JMSF044F19+           GGACGATGACCTCTCGTCTCAGGGCCTCACCCAATTTGCAACAAATTATTCAAAGAATGG
rJMSF008D10+          GGACGATGACCTCTCGTCTCAGGGCCTCACCCAATTTGCAACAAATTATTCAAAGAATGG
                      ____________________________________________________________
consensus             GGACGATGACCTCTCGTCTCAGGGCCTCACCCAATTTGCAACAAATTATTCAAAGAATGG
 
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JMSF044F19+           CATTGTTAGACTTCGAGAAATTTTTACTC                               
rJMSF008D10+          CATTGTTAGACTTCGAGAAATTTTTACTCCGGGGACGCTTCAGGTGCCAAAGACACAAGT
                      ____________________________________________________________
consensus             CATTGTTAGACTTCGAGAAATTTTTACTCCGGGGACGCTTCAGGTGCCAAAGACACAAGT
 
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rJMSF008D10+          TGCACTCAAGGAACTTGAATCTATTCACAAGGTTTTGGATCTATATGTGTGGTTAAGTTT
                      ____________________________________________________________
consensus             TGCACTCAAGGAACTTGAATCTATTCACAAGGTTTTGGATCTATATGTGTGGTTAAGTTT
 
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rJMSF008D10+          TCGGCTAGAAGAGAGCTTTCCAGACCGTGAGCTGGCTGCATCACAGAAGGCTATTTGCAG
                      ____________________________________________________________
consensus             TCGGCTAGAAGAGAGCTTTCCAGACCGTGAGCTGGCTGCATCACAGAAGGCTATTTGCAG
 
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rJMSF008D10+          CATGTTGATTGAGGAGTTCTTGGAAAGACTAGGAGGGTGGCAGAAACCAATGTCAAGAAA
                      ____________________________________________________________
consensus             CATGTTGATTGAGGAGTTCTTGGAAAGACTAGGAGGGTGGCAGAAACCAATGTCAAGAAA
 
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rJMSF008D10+          GTTGCCTCACCAACACCAAAGGAGCAGCCGCTTGAATTCACAGTTATTCCAAGTTGCCAC
                      ____________________________________________________________
consensus             GTTGCCTCACCAACACCAAAGGAGCAGCCGCTTGAATTCACAGTTATTCCAAGTTGCCAC
 
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rJMSF008D10+          AAAAGAATATTAGCCATTTTTTGTTAACACAGAAAACCGACCACTACAGTGGGAATCCTC
                      ____________________________________________________________
consensus             AAAAGAATATTAGCCATTTTTTGTTAACACAGAAAACCGACCACTACAGTGGGAATCCTC
 
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rJMSF008D10+          AAGACCAGAACTAGAACTAGATTTCATAATTCTTTATCAGAAGACAAAGGTCGTTGTCCT
                      ____________________________________________________________
consensus             AAGACCAGAACTAGAACTAGATTTCATAATTCTTTATCAGAAGACAAAGGTCGTTGTCCT
 
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rJMSF008D10+          CACTACTACGAGCATTCAGCATAGTTACTGACAGGGGCGGAGCCAGAAATTTCATCCGGG
                      ____________________________________________________________
consensus             CACTACTACGAGCATTCAGCATAGTTACTGACAGGGGCGGAGCCAGAAATTTCATCCGGG
 
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rJMSF008D10+          GGCGAAAGATTAAAACGAACGAGATATTATATCTACAACACATACATACTTAACCATTTA
                      ____________________________________________________________
consensus             GGCGAAAGATTAAAACGAACGAGATATTATATCTACAACACATACATACTTAACCATTTA
 
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rJMSF008D10+          AGCTACTTCATCTTTGAGTAATTTATATCTATACTATTTACTTATTTCCAAACATTTACT
                      ____________________________________________________________
consensus             AGCTACTTCATCTTTGAGTAATTTATATCTATACTATTTACTTATTTCCAAACATTTACT
 
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rJMSF008D10+          ATATATATAAAAGGTTCCCTATATATAAAAGGAGGGATGGGGGAGGGGGCAGCTGCCCCC
                      ____________________________________________________________
consensus             ATATATATAAAAGGTTCCCTATATATAAAAGGAGGGATGGGGGAGGGGGCAGCTGCCCCC