Contig 007034:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007L06Sequence411007034 (2)ref|XP_009618276.1|72.4PREDICTED: uncharacterized protein LOC104110479 [Nicotiana tomentosiformis]787007034 (2)ref|XP_009799540.1|4e-140PREDICTED: mediator of RNA polymerase II transcription subunit 20a isoform X2 [

Alignment

This contig is upended


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JMSF007L06-                                    GGGTAGATATTTGTATCCTGGAGAACTTTTCCCGC
                      ____________________________________________________________
consensus                                      GGGTAGATATTTGTATCCTGGAGAACTTTTCCCGC
 
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JMSF007L06-           TGTGTGTGTTTTGCTTCACACCTTCAGCCTACTCCGTCTTCACTCTTCAGAGCGAGTAGA
                      ____________________________________________________________
consensus             TGTGTGTGTTTTGCTTCACACCTTCAGCCTACTCCGTCTTCACTCTTCAGAGCGAGTAGA
 
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JMSF007L06-           GTGCGCCATAGCCCGCAGTCCGCCGCAGCAGCGAGCCAGCAGCTCCGCCGTACCGCCGCC
                      ____________________________________________________________
consensus             GTGCGCCATAGCCCGCAGTCCGCCGCAGCAGCGAGCCAGCAGCTCCGCCGTACCGCCGCC
 
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JMSF007L06-           TCTGCGCGATCGCAGACTACAGCTCCGTCGTCAGTCGTGAAGCAGCAGCTCCTCGCCTCC
                      ____________________________________________________________
consensus             TCTGCGCGATCGCAGACTACAGCTCCGTCGTCAGTCGTGAAGCAGCAGCTCCTCGCCTCC
 
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JMSF007L06-           TCAGGAATTTCTGTACTGCCTGGACACAGAGACACAGAGGCTTCCAACAACAAAAAAGAG
rJMSF007L06+                                                             AAAAAAGAG
                      ____________________________________________________________
consensus             TCAGGAATTTCTGTACTGCCTGGACACAGAGACACAGAGGCTTCCAACAACAAAAAAGAG
 
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JMSF007L06-           CAGTCAATTCACGGATCAAAGCTCGAGCTTTCTGATATCCATTATGCCAATCAAATGGGT
rJMSF007L06+          CAGTCAATTCACGGATC-AAGCTCGAGCTTTCTGATATCCATTATGCCAATCAAATGGG-
                      ____________________________________________________________
consensus             CAGTCAATTCACGGATCAAAGCTCGAGCTTTCTGATATCCATTATGCCAATCAAATGGGT
 
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JMSF007L06-           TTTGCACTGGCAACCAAATGCTGGCACAACAGTGAACACCCAAATCCTGACTGAGGTTTC
rJMSF007L06+          TTTGCACTGGCAACCAAATGCTGGCACAACAGTGAACACCCAAATCCTGACTGAGGTTTC
                      ____________________________________________________________
consensus             TTTGCACTGGCAACCAAATGCTGGCACAACAGTGAACACCCAAATCCTGACTGAGGTTTC
 
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JMSF007L06-           TCAGTGTGTTGAAGGC                                            
rJMSF007L06+          TCAGTGTGTTGAAGGCATTAATGGAGTCAAGGAAGGAAGGTGGAAAGCTACTCTAAGCTT
                      ____________________________________________________________
consensus             TCAGTGTGTTGAAGGCATTAATGGAGTCAAGGAAGGAAGGTGGAAAGCTACTCTAAGCTT
 
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rJMSF007L06+          CTACAAGCCAATGCTCAAAGACATAGCTAATGCAAATGAATTTCCGCGTGACTTTTGGGG
                      ____________________________________________________________
consensus             CTACAAGCCAATGCTCAAAGACATAGCTAATGCAAATGAATTTCCGCGTGACTTTTGGGG
 
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rJMSF007L06+          GATTGCACTTCAAGAGCAGCCTGACAAGTATTACTTTGTCATTAGAGGGCAACGGCTAGT
                      ____________________________________________________________
consensus             GATTGCACTTCAAGAGCAGCCTGACAAGTATTACTTTGTCATTAGAGGGCAACGGCTAGT
 
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rJMSF007L06+          TATGGAAGCGGAATCATCAATTCAGAACATAATGGAGAAGCTTCAGTCTTATAAAACTCG
                      ____________________________________________________________
consensus             TATGGAAGCGGAATCATCAATTCAGAACATAATGGAGAAGCTTCAGTCTTATAAAACTCG
 
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rJMSF007L06+          GGTTGCACTTAATTTTGAGGGGTTTCAATACCAACTTGGTGACTTCCGGCTGCGAGTGGG
                      ____________________________________________________________
consensus             GGTTGCACTTAATTTTGAGGGGTTTCAATACCAACTTGGTGACTTCCGGCTGCGAGTGGG
 
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rJMSF007L06+          AAAAGTTGTCCCAATCCACTCTGAGAGCTTGAGGGGAATAGTTATGGAGATGGAGTATCT
                      ____________________________________________________________
consensus             AAAAGTTGTCCCAATCCACTCTGAGAGCTTGAGGGGAATAGTTATGGAGATGGAGTATCT
 
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rJMSF007L06+          TCCCATTTCTTCATGGGAAACATCACACCAAATCATGGGCGAGTTCTTTGATATCTGGAA
                      ____________________________________________________________
consensus             TCCCATTTCTTCATGGGAAACATCACACCAAATCATGGGCGAGTTCTTTGATATCTGGAA
 
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rJMSF007L06+          GGATGCTCTCTCAAAGAGATCATTACCAGGTCATTTTATGCATATCGAACCAAACTTCAC
                      ____________________________________________________________
consensus             GGATGCTCTCTCAAAGAGATCATTACCAGGTCATTTTATGCATATCGAACCAAACTTCAC
 
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rJMSF007L06+          AGAGTTTGGCCTTCCCGATCAGTATACTTCTCAACACACAGCTGTTCAGTATGCTTGTAT
                      ____________________________________________________________
consensus             AGAGTTTGGCCTTCCCGATCAGTATACTTCTCAACACACAGCTGTTCAGTATGCTTGTAT
 
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rJMSF007L06+          CATGGCTCAAATGATAGCCACAGCTCAGTCAGCCGCCCAGATGAGAAACTAGACAAGGCA
                      ____________________________________________________________
consensus             CATGGCTCAAATGATAGCCACAGCTCAGTCAGCCGCCCAGATGAGAAACTAGACAAGGCA
 
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rJMSF007L06+          AGATCCTTGTTCCATGTAGTCTTCTTAGATGTTGTGTTTGTACAATCTGAGTATGAACCT
                      ____________________________________________________________
consensus             AGATCCTTGTTCCATGTAGTCTTCTTAGATGTTGTGTTTGTACAATCTGAGTATGAACCT