Contig 007028:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005N02Sequence346022026390007028 (2)ref|NP_001234006.1|2e-04importin subunit alpha [Solanum lycopersicum] sp|O22478.2|IMA_SOLLC RecName: Ful
JMSF005N04Sequence368007753 (2)420007028 (2)ref|NP_001234006.1|2e-05importin subunit alpha [Solanum lycopersicum] sp|O22478.2|IMA_SOLLC RecName: Ful

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF005N02+ GGTGAGCTTGTACATTCAAATGACGAGGAAGTCCTGAC
rJMSF005N04+ ACCGGAGGTTCTACCTTACTCCGGTGAGCTTGTACATTCAAATGACGAGGAAGTCCTGAC
                      ____________________________________________________________
consensus ACCGGAGGTTCTACCTTACTCCGGTGAGCTTGTACATTCAAATGACGAGGAAGTCCTGAC
 
. : . : . : . : . : . :
rJMSF005N02+ AGATGAATGCTGGGCGAGAAAATCCAAGCTGTAATTGAGGCTGGAGTCTGTCACTGCCTT
rJMSF005N04+ AGATGAATGCTGGGCGAGAAAATCCAAGCTGTAATTGAGGCTGGAGTCTGTCACTGCCTT
                      ____________________________________________________________
consensus AGATGAATGCTGGGCGAGAAAATCCAAGCTGTAATTGAGGCTGGAGTCTGTCACTGCCTT
 
. : . : . : . : . : . :
rJMSF005N02+ GTTGAGCTTCTACCGTGAGAATTAGATTTTAATTTCTATCTTTTATAAACTCAAAAGGAT
rJMSF005N04+ GTTGAGCTTCTACCGTGAGAATTAGATTTTAATTTCTATCTTTTATAAACTCAAAAGGAT
                      ____________________________________________________________
consensus GTTGAGCTTCTACCGTGAGAATTAGATTTTAATTTCTATCTTTTATAAACTCAAAAGGAT
 
. : . : . : . : . : . :
rJMSF005N02+ CCTTNTATGCAAATCCAACGACATTGGATGTACCAACAACTGAACCATCCTTATACAACA
rJMSF005N04+ CCTTCTATGCAAATCCAACGACATTGGATGTACCAACAACTGAACCATCCTTATACAACA
                      ____________________________________________________________
consensus CCTTCTATGCAAATCCAACGACATTGGATGTACCAACAACTGAACCATCCTTATACAACA
 
. : . : . : . : . : . :
rJMSF005N02+ GTATGGTTAGGATTTCTCCATCATGGGCTATATTTTTCACAGTTAAACACTATCTTTGTC
rJMSF005N04+ GTATGGTTAGGATTTCTCCATCATGGGCTATATTTTTCACAGTTAAACACTATCTTTGTC
                      ____________________________________________________________
consensus GTATGGTTAGGATTTCTCCATCATGGGCTATATTTTTCACAGTTAAACACTATCTTTGTC
 
. : . : . : . : . : . :
rJMSF005N02+ TCCTTGTAGATATATATCCTTCATATTGTAGACCAAATATATGGCATTGTAAAGCTCNGC
rJMSF005N04+ TCCTTGTAGATATATATCCTTCATATTGTAGACCAAATATATGGCATTGTAAAGCTCTGC
                      ____________________________________________________________
consensus TCCTTGTAGATATATATCCTTCATATTGTAGACCAAATATATGGCATTGTAAAGCTCTGC
 
. : . : . : . : . : . :
rJMSF005N02+ CTGAACTTTAAATAATGGCAGCATTTGGTATCTAACACCATATTGACTCTGA
rJMSF005N04+ CTGAACTTTAAATAATGGCAGCATTTGGTATCTAACACCATATTGACTCTGAATGAACAT
                      ____________________________________________________________
consensus CTGAACTTTAAATAATGGCAGCATTTGGTATCTAACACCATATTGACTCTGAATGAACAT