Contig 007027:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005K14Sequence400006555 (8)gb|EYU42243.1|4e-45hypothetical protein MIMGU_mgv1a011536mg [Erythranthe guttata]251007027 (5)
JMSF005M16Sequence246013498 (3)275007027 (5)ref|XP_009600347.1|8e-08PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650
JMSF039M20Sequence581013498 (3)ref|XP_011102070.1|3e-65PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein 872007027 (5)ref|XP_007025271.1|2e-126Leucine-rich repeat transmembrane protein kinase [Theobroma cacao] gb|EOY27893.1
JMSF040P07Sequence408017910ref|XP_010655579.1|1e-17PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein 853007027 (5)ref|XP_007025271.1|2e-126Leucine-rich repeat transmembrane protein kinase [Theobroma cacao] gb|EOY27893.1
JMSF047I19Sequence675013498 (3)ref|XP_006358134.1|5e-78PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650817007027 (5)ref|XP_004233025.1|4e-116PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650

Alignment

This contig is upended


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rJMSF039M20+                                             CTATGGGTGTTGTGTTGAGGGAAAG
rJMSF040P07+                                                 GGGTGTTGTGTTGAGGGAAAG
                      ____________________________________________________________
consensus                                                CTATGGGTGTTGTGTTGAGGGAAAG
 
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rJMSF039M20+          CAATTGTTGCTGGTGTATGAGTACTTGGAAANCAACAGCCTTGCTCATGCTCTTTTCGGT
rJMSF040P07+          CAATTGTTGCTGGTGTATGAGTACTTGGAAAACAACAGCCTTGCTCATGCTCTTTTCGGT
rJMSF047I19+                                                       CATGCTCTTTTCGGT
                      ____________________________________________________________
consensus             CAATTGTTGCTGGTGTATGAGTACTTGGAAAACAACAGCCTTGCTCATGCTCTTTTCGGT
 
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rJMSF039M20+          TCAGAAGAGTGTCAACCGAAAATAGATTGGCCTTCTAGACAAAGAATTTGTCTTGGTATT
rJMSF040P07+          TCAGAAGAGTGTCAACCGAAAATAGATTGGCCTTCTAGACAAAGAATTTGTCTTGGTATT
rJMSF047I19+          TCAGAAGAGTGTCAACCGAAAATAGATTGGCCTTCTAGACAAAGAATTTGTCTTGGTATT
                      ____________________________________________________________
consensus             TCAGAAGAGTGTCAACCGAAAATAGATTGGCCTTCTAGACAAAGAATTTGTCTTGGTATT
 
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rJMSF039M20+          GCAAAAGGTTTAGTTTTTCTGCATGAAGAATCAGCAATAAAAATTGTTCATAGAGACATA
rJMSF040P07+          GCAAAAGGTTTAGTTTTTCTGCATGAAGAATCAGCAATAAAAATTGTTCATAGAGACATA
rJMSF047I19+          GCAAAAGGTTTAGTTTTTCTGCATGAAGAATCAGCAATAAAAATTGTTCATAGAGACATA
                      ____________________________________________________________
consensus             GCAAAAGGTTTAGTTTTTCTGCATGAAGAATCAGCAATAAAAATTGTTCATAGAGACATA
 
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rJMSF039M20+          AAAGCCACCAATGTGCTTCTTGACAAAGAACTCAATCCGAAGATTTCTGACTTTGGCCTA
rJMSF040P07+          AAAGCCACCAATGTGCTTCTTGACAAAGAACTCAATCCGAAGATTTCTGACTTTGGCCTA
rJMSF047I19+          AAAGCCACCAATGTGCTTCTTGACAAAGAACTCAATCCGAAGATTTCTGACTTTGGCCTA
                      ____________________________________________________________
consensus             AAAGCCACCAATGTGCTTCTTGACAAAGAACTCAATCCGAAGATTTCTGACTTTGGCCTA
 
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rJMSF039M20+          GCTAAACTCAATGATGATGCGAATACACATATTAGCACAAGAGTTGCCGGGACAATAGGA
rJMSF040P07+          GCTAAACTCAATGATGATGCGAATACACATATTAGCACAAGAGTTGCCGGGACAATAGGA
rJMSF047I19+          GCTAAACTCAATGATGATGCGAATACACATATTAGCACAAGAGTTGCCGGGACAATAGGA
                      ____________________________________________________________
consensus             GCTAAACTCAATGATGATGCGAATACACATATTAGCACAAGAGTTGCCGGGACAATAGGA
 
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rJMSF039M20+          TACATGGCTCCTGAATATGCAATGTGGGGCTACTTAACATACAAAGCAGATGTCTATAGT
rJMSF040P07+          TACATGGCTCCTGAATATGCAATGTGGGGCTACTTAACATACAAAGCAGATGTCTATAGT
rJMSF047I19+          TACATGGCTCCTGAATATGCAATGTGGGGCTACTTAACATACAAAGCAGATGTCTATAGT
                      ____________________________________________________________
consensus             TACATGGCTCCTGAATATGCAATGTGGGGCTACTTAACATACAAAGCAGATGTCTATAGT
 
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rJMSF039M20+          TTCGGTGTAGTGGCACTAGAAATTGTTGCAGGGAAGAGCAACATGAAGTATCGTCCTGAT
rJMSF040P07+          TTCGGTGTAGTGGCACTAGAAATTGTTGCAGGGAAGAGCAACATGAAGTATCGTCCTGAT
rJMSF047I19+          TTCGGTGTAGTGGCACTAGAAATTGTTGCAGGGAAGAGCAACATGAAGTATCGTCCTGAT
                      ____________________________________________________________
consensus             TTCGGTGTAGTGGCACTAGAAATTGTTGCAGGGAAGAGCAACATGAAGTATCGTCCTGAT
 
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rJMSF039M20+          GAGAACTTTATTTGCATCCTTGATTGGGCCCTTGATCTTCAAAAAAAGGGGAACCTAATG
rJMSF040P07+          GAGAACTTTATTTGCATCCTTGATTGGGCCCTTGATCTTCAAAAAAAGGGGAACCTAATG
rJMSF047I19+          GAGAACTTTATTTGCATCCTTGATTGGGCCCTTGATCTTCAAAAAAAGGGGAACCTAATG
                      ____________________________________________________________
consensus             GAGAACTTTATTTGCATCCTTGATTGGGCCCTTGATCTTCAAAAAAAGGGGAACCTAATG
 
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rJMSF039M20+          GAGCTAATAGATCCAAGATTGGGTTCTGATTTTGATAAAGAAGAGGCACTCAGAATGATC
rJMSF040P07+          GAGCTAATAGATCCAAGATTGGGTTCTGATTTTGATAAAGAAGAGGCACTCAGAATGATC
rJMSF047I19+          GAGCTAATAGATCCAAGATTGGGTTCTGATTTTGATAAAGAAGAGGCACTCAGAATGATC
                      ____________________________________________________________
consensus             GAGCTAATAGATCCAAGATTGGGTTCTGATTTTGATAAAGAAGAGGCACTCAGAATGATC
 
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rJMSF039M20+          AAAGTGGCTTTGGTTTGTACTAATCCTTCACCCGCCCTAAGGCCATCAATGTCTGCAGTA
rJMSF040P07+          AAAGTGGCTTTGGTTTGTACTAATCCTTCACCCGCCCTAAGGCCATCAATGTCTGCAGTA
rJMSF047I19+          AAAGTGGCTTTGGTTTGTACTAATCCTTCACCCGCCCTAAGGCCATCAATGTCTGCAGTA
rJMSF005K14+                                                    CCATCAATGTCTGCAGTA
rJMSF005M16+                                 TCCTTCACCCGCCCTAAGGCCATCAATGTCTGCAGTA
                      ____________________________________________________________
consensus             AAAGTGGCTTTGGTTTGTACTAATCCTTCACCCGCCCTAAGGCCATCAATGTCTGCAGTA
 
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rJMSF039M20+          GTGAGCATGCTTGAAAGCCATGATGATATTCTTGAGTACAAATCCGATCTACATGAATTT
rJMSF040P07+          GTGAGCATGCTTGAAAGCCATGATGATATTCTTGAGTACAAATCCGATCTACATGAATTT
rJMSF047I19+          GTGAGCATGCTTGAAAGCCATGATGATATTCTTGAGTACAAATCCGATCTACATGAATTT
rJMSF005K14+          GTGAGCANGCTTGNAAGCCATGATGATATTNNTGAGTACAAATCCGATCTACATGAATTT
rJMSF005M16+          GTGAGCATGCTTGAAAGCCATGATGATATTCTTGAGTACAAATCCGATCTACATGAATTT
                      ____________________________________________________________
consensus             GTGAGCATGCTTGAAAGCCATGATGATATTCTTGAGTACAAATCCGATCTACATGAATTT
 
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rJMSF039M20+          AACTTTGAAGCAATGAGAGATCATTATGATGAAATGCTAGTC                  
rJMSF040P07+          AACTTTGAAGCAATGAGAGATCATTATGATGAAATGCTAGTCAATGCAAGTGTTTCTCCC
rJMSF047I19+          AACTTTGAAGCAATGAGAGATCATTATGATGAAATGCTAGTCAATGCAAGTGTTTCTCCC
rJMSF005K14+          AACTTTGAAGCAATGNGAGATCATTNTGATGAAATGCTAGTCAATGCAAGTGTTTCTCCC
rJMSF005M16+          AACTTTGAAGCAATGAGAGATCATTATGATGAAATGCTAGTCAATGCAAGTGTTTCTCCC
                      ____________________________________________________________
consensus             AACTTTGAAGCAATGAGAGATCATTATGATGAAATGCTAGTCAATGCAAGTGTTTCTCCC
 
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rJMSF040P07+          GACAACTCAGA-GTGCACACATCTAAATGAGGAACTACAGTAGTCCGTGGTGTTAGAAAA
rJMSF047I19+          GACAACTCAGA-GTGCACACATCTAAATGAGGAACTACAGTAGTCCGTGGTGTTAGAAAA
rJMSF005K14+          GNCAACTCAGACGTGCACACATCTAAATGAGGAACTACAGTNGTCCGTGGTGTTAGAAAA
rJMSF005M16+          GACAACTCAGA-GTGCACACATCTAAATGAGGAACTACAGTAGTCCGTGGTGTTAGAAAA
                      ____________________________________________________________
consensus             GACAACTCAGA-GTGCACACATCTAAATGAGGAACTACAGTAGTCCGTGGTGTTAGAAAA
 
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rJMSF040P07+          TATTGGTTAATGGTGTA-AGAAAACACAAGAAAAAAATCAAGAATCAATAATTT      
rJMSF047I19+          TATTGGTTAATGGTGTA-AGAAAACACAAGAAAAAAATCAAGAATCAATAATTT      
rJMSF005K14+          TATTGGTTAATGGTGTACAGAAAACACATGAAAAAAATCAAGAATCAATAA         
rJMSF005M16+          TATTGGTTAATGGTGTA-AGAAAACACAAGAAAAAAATCAAGAATCAATAATTTAAGCGG
                      ____________________________________________________________
consensus             TATTGGTTAATGGTGTA-AGAAAACACAAGAAAAAAATCAAGAATCAATAATTTAAGCGG