Contig 007025:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005B17Sequence238007748 (2)emb|CDO97656.1|8e-07unnamed protein product [Coffea canephora]241007025 (2)
JMSF005B19Sequence316002079 (2)emb|CDP08886.1|5e-45unnamed protein product [Coffea canephora]372007025 (2)ref|XP_009776306.1|2e-39PREDICTED: protein NRT1/ PTR FAMILY 4.3-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF005B19+                                                         TTTACAAGCAGCC
                      ____________________________________________________________
consensus                                                            TTTACAAGCAGCC
 
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rJMSF005B19+          ATGAAGGGCATGCAAGCTTCCGCAACCGCCATAACCTACTGCTCTTACTCCTTCGGCTTT
                      ____________________________________________________________
consensus             ATGAAGGGCATGCAAGCTTCCGCAACCGCCATAACCTACTGCTCTTACTCCTTCGGCTTT
 
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rJMSF005B17+                            GTCTCTGTCGTGGATAAGATCACTTNTGGCTCCTNNTAATGG
rJMSF005B19+          TACCTTAGCTCCGTCCTCGTCTCTGTCGTGGATAAGATCACTTCTGGCTCCT-CTAATGG
                      ____________________________________________________________
consensus             TACCTTAGCTCCGTCCTCGTCTCTGTCGTGGATAAGATCACTTCTGGCTCCTNCTAATGG
 
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rJMSF005B17+          CGGCTGGCTTGCCGACAATAATCTCAATAAAGACAGGCTTGATCTCTTATACTGGTTCCT
rJMSF005B19+          CGGCTGGCTTGCCGACAATAATCTCAATAAAGACAGGCTTGATCTCTTCTACTGGTTCCT
                      ____________________________________________________________
consensus             CGGCTGGCTTGCCGACAATAATCTCAATAAAGACAGGCTTGATCTCTTCTACTGGTTCCT
 
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rJMSF005B17+          TGCAACCTTAAGCTTCCTTAACTTCCTCAACTATCTCTTCTGGGCAAGANGGTATTCGCG
rJMSF005B19+          TGCAACCTTAAGCTTCCTTAACTTCCTCAACTATCTCTTCTGGGCAAGATGGTATTCGCG
                      ____________________________________________________________
consensus             TGCAACCTTAAGCTTCCTTAACTTCCTCAACTATCTCTTCTGGGCAAGATGGTATTCGCG
 
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rJMSF005B17+          GAAGCGGTCGTCTTCCTCAGCTTNGCCGCCATTCCACCATGAATTCATCAGTACTAAAAA
rJMSF005B19+          GAAGCGGTCGTCTTCCTCAGCTTCGCCGCCATTCCACCATGAATTCATCAGTACTAAAAA
                      ____________________________________________________________
consensus             GAAGCGGTCGTCTTCCTCAGCTTCGCCGCCATTCCACCATGAATTCATCAGTACTAAAAA
 
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rJMSF005B17+          GATTGCTGGGAGTGATGAT                                         
rJMSF005B19+          GATTGCTGGGAGTGATGATATATAGAATATATAGAATGTCTAAAAATTACNTATTATTAT
                      ____________________________________________________________
consensus             GATTGCTGGGAGTGATGATATATAGAATATATAGAATGTCTAAAAATTACNTATTATTAT