Contig 007023:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003M21Sequence307000569 (2)622007023 (2)ref|XP_009767636.1|1e-22PREDICTED: GATA transcription factor 15-like isoform X2 [Nicotiana sylvestris]
JMSF036H04Sequence668000569 (2)ref|XP_009590423.1|2e-12PREDICTED: GATA transcription factor 15-like isoform X2 [Nicotiana tomentosifor615007023 (2)ref|XP_009767635.1|9e-23PREDICTED: GATA transcription factor 15-like isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF036H04+                                          AGAGACAAGTGGGCAGATCAAGACGTGC
                      ____________________________________________________________
consensus                                             AGAGACAAGTGGGCAGATCAAGACGTGC
 
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rJMSF036H04+          GCTGATTGTGGAACCACCAAGACCCCTNTATGGAGAGGTGGCCCAGCCGGCCCCAAGGTC
                      ____________________________________________________________
consensus             GCTGATTGTGGAACCACCAAGACCCCTNTATGGAGAGGTGGCCCAGCCGGCCCCAAGGTC
 
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rJMSF036H04+          CGATCAGATCAGTTAACCNATCCCCCNTTTTCCTAATCATTTCNTTAATNTGATGTTTNT
                      ____________________________________________________________
consensus             CGATCAGATCAGTTAACCNATCCCCCNTTTTCCTAATCATTTCNTTAATNTGATGTTTNT
 
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rJMSF036H04+          ACTTTTGTACATGCNGTCGCTTTGCAATGCTTGTGGGATAAGGAGCNGGAAAAAGAGAAG
rJMSF003M21+                            GCTTTGCAATGCTTGTGGGATNAGGNGCCGGAAAAAGNGAAG
                      ____________________________________________________________
consensus             ACTTTTGTACATGCNGTCGCTTTGCAATGCTTGTGGGATAAGGAGCCGGAAAAAGAGAAG
 
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rJMSF036H04+          AGCTTTTTTGGGTNTCAACAAAGATGACNAGAAACCCNAGAAGGCATNTGGGAACAAGAA
rJMSF003M21+          AGCTTTTTTGGGTTTCNACAAAGNTGNCNAGAAACCCNAGAAGGCNTTTGGGAACNAGAA
                      ____________________________________________________________
consensus             AGCTTTTTTGGGTTTCAACAAAGATGACNAGAAACCCNAGAAGGCATTTGGGAACAAGAA
 
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rJMSF036H04+          CNCCNTTGCAGCCCCTCAAAACNGTGGAACTNCNAGCGATAGCGGGAGTAGCAGCGGTGG
rJMSF003M21+          CNCCNTTGCAGCCCCTCAAAACNGTGGAANTNCNAGCGATAGCGGGAGTNGCAGCGGTGG
                      ____________________________________________________________
consensus             CNCCNTTGCAGCCCCTCAAAACNGTGGAACTNCNAGCGATAGCGGGAGTAGCAGCGGTGG
 
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rJMSF036H04+          GAAGATNGGAGGAGTTCCNCNGCCGGTGAGGAGAAAGTTGGTGCCTTTTGGAATTGGGAA
rJMSF003M21+          GAAGATTGGAGGAGTTNCCCCGCCNGTGAGGNGAAANTTGGTGCCTTTTGGAATTGGGAA
                      ____________________________________________________________
consensus             GAAGATTGGAGGAGTTCCCCCGCCGGTGAGGAGAAAGTTGGTGCCTTTTGGAATTGGGAA
 
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rJMSF036H04+          ACAAGTGGCGCTGCNGAGACCGAGATNGCAGCNGCNGAGGAGGAAGA-TTGGGGAAGTAG
rJMSF003M21+          ACNAGTGGCGCTGCNGAGACCGAGATNGCNGCNGCNGAGGAGGAAGACTTGGGGAAGTNG
                      ____________________________________________________________
consensus             ACAAGTGGCGCTGCNGAGACCGAGATNGCAGCNGCNGAGGAGGAAGACTTGGGGAAGTAG
 
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rJMSF036H04+          AGCNTGCGGCTTTTGTGTTGATGTCTCTGTCTTGTGGCTCTGTTTATGCTTAGGATTCAA
rJMSF003M21+          AGCNTGCGGCTTTTGTGTTGANGTNTNTGTNTTGTGGCTNTGTTTATGCTTNGGATTCAA
                      ____________________________________________________________
consensus             AGCNTGCGGCTTTTGTGTTGATGTCTCTGTCTTGTGGCTCTGTTTATGCTTAGGATTCAA
 
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rJMSF036H04+          GTGTATTAGTGAGTGTAGTTAGATGATGACTAGAAACCCCCC-AAAAAAAAAACAAGGGC
rJMSF003M21+          GTGTNTTNGTGAGTGTAGTTAGATGATGACTNGAAACCCCCCNAAAAAAAAAACAAGGGC
                      ____________________________________________________________
consensus             GTGTATTAGTGAGTGTAGTTAGATGATGACTAGAAACCCCCCNAAAAAAAAAACAAGGGC
 
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rJMSF036H04+          AAAAAGATCTCAAGTTGAGATGGCTCTTTCAAATGTATGAGATCCAATC           
rJMSF003M21+          AAAAAGATCTCAAGTTGAGATGGCTCTTTCAAATGTATGAGATCCAATCATGTAATCCCC
                      ____________________________________________________________
consensus             AAAAAGATCTCAAGTTGAGATGGCTCTTTCAAATGTATGAGATCCAATCATGTAATCCCC