Contig 007022:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003M06Sequence403002241 (3)652007022 (3)ref|XP_009757714.1|3e-15PREDICTED: uncharacterized protein LOC104210476 isoform X3 [Nicotiana sylvestri
JMSF024G15Sequence738002241 (3)ref|XP_010318734.1|2e-19PREDICTED: uncharacterized protein LOC101253678 isoform X2 [Solanum lycopersicu676007022 (3)ref|XP_006341349.1|109PREDICTED: uncharacterized protein LOC102595715 [Solanum tuberosum]
JMSF025H09Sequence707002241 (3)ref|XP_004236455.1|1e-19PREDICTED: uncharacterized protein LOC101253678 isoform X1 [Solanum lycopersicu195007022 (3)ref|XP_009757723.1|2e-05PREDICTED: uncharacterized protein LOC104210476 isoform X4 [Nicotiana sylvestri

Alignment

This contig is upended


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rJMSF024G15+                                                            TGGAGGAGAT
                      ____________________________________________________________
consensus                                                               TGGAGGAGAT
 
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rJMSF024G15+          TTTCGAAAAACATGGTGATATCGCTGCCAACTGTCCCTACCCATCGCGGGGGTTTAGGGC
                      ____________________________________________________________
consensus             TTTCGAAAAACATGGTGATATCGCTGCCAACTGTCCCTACCCATCGCGGGGGTTTAGGGC
 
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rJMSF025H09+                  TTGAGGTAATCTGTGATGTCATCAGACAACTGTGAACTAATGATTTGGGAAC
rJMSF024G15+          CTCCGTCTTTGAGGTAATCTGTGATGTCATCAGACAACTGTGAACTAATGATTTGGGAAC
rJMSF003M06+                  TTGAGGTAATCTGTGATGTCATCAGACAACTGTGAACTAATGATTTGGGAAC
                      ____________________________________________________________
consensus             CTCCGTCTTTGAGGTAATCTGTGATGTCATCAGACAACTGTGAACTAATGATTTGGGAAC
 
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rJMSF025H09+          CATTGTTTCGATGGTTGGACAGATGAAGACTGAAGTCTCGGACACTGCAGCAGCTGCTCA
rJMSF024G15+          CATTGTTTCGATGGTTGGACAGATGAAGACTGAAGTCTCGGACACTGCAGCTGCTGCTCA
rJMSF003M06+          CATTGTTTCGATGGTTGGACAGATGAAGACTGAAGTCTCGGACACTGCAGCTGCTGCTCA
                      ____________________________________________________________
consensus             CATTGTTTCGATGGTTGGACAGATGAAGACTGAAGTCTCGGACACTGCAGCTGCTGCTCA
 
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rJMSF025H09+          TCTCGAGGTATCGTGGCTGAAGCAGATTCTCANTGATATTCCAACCGAGAATGATGGCCA
rJMSF024G15+          TCTCGAGGTATCGTGGCTGAAGCAGATTCTCAATGATATTCCAACCGAGAATGATGGCCA
rJMSF003M06+          TCTCGAGGTATCGTGGCTGAAGCAGATTCTCAATGATATTCCAACCGAGAATGATGGCCA
                      ____________________________________________________________
consensus             TCTCGAGGTATCGTGGCTGAAGCAGATTCTCAATGATATTCCAACCGAGAATGATGGCCA
 
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rJMSF025H09+          GCT                                                         
rJMSF024G15+          GCTAGCAAGAGTAATCAGAAACACCGCACTTGTTAGTAAAGCAGCCAGGAAGGACTTGAC
rJMSF003M06+          GCTAGCAAGAGTAATCAGAAACACCGCACTTGTTAGTAAAGCAGCCAGGAAGGACTTGAC
                      ____________________________________________________________
consensus             GCTAGCAAGAGTAATCAGAAACACCGCACTTGTTAGTAAAGCAGCCAGGAAGGACTTGAC
 
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rJMSF024G15+          ACAGAGAAAAGCCGAGCTTGTGATTGCAGAGCGCAGCTACGAGGAGGCCAAAAGACAGCT
rJMSF003M06+          ACAGAGAAAAGCCGAGCTTGTGATTGCAGAGCGCAGCTACGAGGAGGCCAAAAGACAGCT
                      ____________________________________________________________
consensus             ACAGAGAAAAGCCGAGCTTGTGATTGCAGAGCGCAGCTACGAGGAGGCCAAAAGACAGCT
 
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rJMSF024G15+          TGAGCGTGCTGAACAGAGTAAACGAACAGCAGAAAGGGCAGTCGAGGTTCTTGAATCAGT
rJMSF003M06+          TGAGCGTGCTGAACAGAGTAAACGAACAGCAGAAAGGGCAGTCGAGGTTCTTGAATCAGT
                      ____________________________________________________________
consensus             TGAGCGTGCTGAACAGAGTAAACGAACAGCAGAAAGGGCAGTCGAGGTTCTTGAATCAGT
 
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rJMSF024G15+          GAAGAAAACGGCCCAAAATGACATGGAGTTGAACTTCAAACGGAATGATCTGCAGAACAG
rJMSF003M06+          GAAGAAAACGGCCCAAAATGACATGGAGTTGAACTTCAAACGGAATGATCTGCAGAACAG
                      ____________________________________________________________
consensus             GAAGAAAACGGCCCAAAATGACATGGAGTTGAACTTCAAACGGAATGATCTGCAGAACAG
 
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rJMSF024G15+          GTTCTTTACTCTCCATTAACCTCCCGGGGCCCCTCCTCTATCCCAAACCTCCTGTGCATG
rJMSF003M06+          GTTCTTTACTCTCCATTAACCTCCCGGGGCCCCTCCTCTATCCCAAACCTCCTGTGCATG
                      ____________________________________________________________
consensus             GTTCTTTACTCTCCATTAACCTCCCGGGGCCCCTCCTCTATCCCAAACCTCCTGTGCATG
 
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rJMSF024G15+          ATACTACTATGTATCAAGTTTGCAGACCTTCGAGGGCTTCAGAGTAAGGGAAAATAATGG
rJMSF003M06+          ATACTACTATGTATCAAGTTTGCAGACCTTCGAGGGCTTCAGAGTAAGGGAAAATAATGG
                      ____________________________________________________________
consensus             ATACTACTATGTATCAAGTTTGCAGACCTTCGAGGGCTTCAGAGTAAGGGAAAATAATGG
 
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rJMSF024G15+          CATGGTTCGAGTTCATTGTGAAGATTCGGGGAAAGAGCTGTTTGCTGAGAAATCCCAACG
rJMSF003M06+          CATGGTTCGAGTTCATTGTGAAGATTCGGGGAAAGAGCTGTTTGCTGAGAAATCCCAACG
                      ____________________________________________________________
consensus             CATGGTTCGAGTTCATTGTGAAGATTCGGGGAAAGAGCTGTTTGCTGAGAAATCCCAACG
 
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rJMSF024G15+          GTGTTG                                                      
rJMSF003M06+          GTGTTGTTCTGAGCCCAGTAACTGATATCACAGTTTGCCCATGGTGGTGGATGAAGACCC
                      ____________________________________________________________
consensus             GTGTTGTTCTGAGCCCAGTAACTGATATCACAGTTTGCCCATGGTGGTGGATGAAGACCC