Contig 007018:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003C13Sequence337007018 (2)ref|XP_009623005.1|4e-40PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Nicotiana to748007018 (2)gb|AAL07518.1|2e-20RNA-binding protein precursor [Nicotiana tabacum]

Alignment

This contig is upended


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JMSF003C13-                           GAGAAGCTCTGAGAAGCCTGAGCTGTGGTGGTTAAACGAGAAGG
                      ____________________________________________________________
consensus                             GAGAAGCTCTGAGAAGCCTGAGCTGTGGTGGTTAAACGAGAAGG
 
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JMSF003C13-           GTTTATCGATCCGCCGAAGGAATGGCTTTTGCAAATAGAATTGGAAATGTGCTCAAACAG
                      ____________________________________________________________
consensus             GTTTATCGATCCGCCGAAGGAATGGCTTTTGCAAATAGAATTGGAAATGTGCTCAAACAG
 
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JMSF003C13-           GCAGTTAGCAGGCACATGAATCCTGAGTTATCTCACTCAAACTCATCCCTGTACCAGGCA
                      ____________________________________________________________
consensus             GCAGTTAGCAGGCACATGAATCCTGAGTTATCTCACTCAAACTCATCCCTGTACCAGGCA
 
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JMSF003C13-           TATAGAAGCATGTCGTCTTCAAAGCTTTTTGTTGGAGGCCTTTCTTATGGGACTGATGAA
                      ____________________________________________________________
consensus             TATAGAAGCATGTCGTCTTCAAAGCTTTTTGTTGGAGGCCTTTCTTATGGGACTGATGAA
 
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JMSF003C13-           ACAAGTTTGAAGGAAACATTTGACCAGTTTGGTACTGTGCTTGAAGCACGGATTATTATG
rJMSF003C13+                                          TACTGTGCTTGNAGCACGGATTATTATG
                      ____________________________________________________________
consensus             ACAAGTTTGAAGGAAACATTTGACCAGTTTGGTACTGTGCTTGAAGCACGGATTATTATG
 
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JMSF003C13-           GACCGTGATACTGGAAGATCCAGANGCTTTGGCTTTGTTAGTTTTTCAACAAC       
rJMSF003C13+          GACCGTGATACTGGAAGATCCAGAGGCTTTGGCTTTGTTAGTTTTTCAACAACTGATTGT
                      ____________________________________________________________
consensus             GACCGTGATACTGGAAGATCCAGAGGCTTTGGCTTTGTTAGTTTTTCAACAACTGATTGT
 
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rJMSF003C13+          GCAACCAGTGCCATGCAGGCCATGGATGGACAGGATCTTCATGGCCGACGGATTAGGGTG
                      ____________________________________________________________
consensus             GCAACCAGTGCCATGCAGGCCATGGATGGACAGGATCTTCATGGCCGACGGATTAGGGTG
 
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rJMSF003C13+          AACTATGCAACTGAGAAGCCTCGTGGTGGATTTGGTGGTGGAGGATATGGAAACAATAGT
                      ____________________________________________________________
consensus             AACTATGCAACTGAGAAGCCTCGTGGTGGATTTGGTGGTGGAGGATATGGAAACAATAGT
 
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rJMSF003C13+          TATGGAAGTGGAGGTGGGAACTATGGCAGAGGGGATGGATATGGAGGTGGTAGCTATGGC
                      ____________________________________________________________
consensus             TATGGAAGTGGAGGTGGGAACTATGGCAGAGGGGATGGATATGGAGGTGGTAGCTATGGC
 
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rJMSF003C13+          AGTGGAGCGGGTGGATATGGTGGTGGTGGTAACTATGGCAGCAGTGGTGGTGGTAACTAC
                      ____________________________________________________________
consensus             AGTGGAGCGGGTGGATATGGTGGTGGTGGTAACTATGGCAGCAGTGGTGGTGGTAACTAC
 
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rJMSF003C13+          AACAGCGTTGCGGGTGGATATGGTGGAGGTGGTAACTATGGCGGCAGTGGTGGGTTTGGT
                      ____________________________________________________________
consensus             AACAGCGTTGCGGGTGGATATGGTGGAGGTGGTAACTATGGCGGCAGTGGTGGGTTTGGT
 
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rJMSF003C13+          AGTGACTATGGGAGCAATGTCGGCTATAACAGCAGTTATGCCACTGAAGAGAGAAACTTT
                      ____________________________________________________________
consensus             AGTGACTATGGGAGCAATGTCGGCTATAACAGCAGTTATGCCACTGAAGAGAGAAACTTT
 
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rJMSF003C13+          GATGGTGGGAATAGTGGTATTGGCAATAATGGTAACAGTTATGCCAACACCGGATTTGAT
                      ____________________________________________________________
consensus             GATGGTGGGAATAGTGGTATTGGCAATAATGGTAACAGTTATGCCAACACCGGATTTGAT
 
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rJMSF003C13+          AGGACAGCAGGTTATGGTGCAGGCCAGCAACAGCTGAACACAAATCAAGAGATACCCGAG
                      ____________________________________________________________
consensus             AGGACAGCAGGTTATGGTGCAGGCCAGCAACAGCTGAACACAAATCAAGAGATACCCGAG
 
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rJMSF003C13+          CCTGTTGCTGGAGATTTCACCCATGACCCATTGGACGGGAATTACAGGGATGACGACAAC
                      ____________________________________________________________
consensus             CCTGTTGCTGGAGATTTCACCCATGACCCATTGGACGGGAATTACAGGGATGACGACAAC
 
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rJMSF003C13+          GAGCCAGATGGTTATGCCAACAAAAGCGGCTGAAGAAATCTTTCATAGATGATATACTGT
                      ____________________________________________________________
consensus             GAGCCAGATGGTTATGCCAACAAAAGCGGCTGAAGAAATCTTTCATAGATGATATACTGT
 
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rJMSF003C13+          GTTGAGCTTGCCTAGGAACAAAACATAATAAGTCACTTCTTTTGGTGTTGCTATGCACAT
                      ____________________________________________________________
consensus             GTTGAGCTTGCCTAGGAACAAAACATAATAAGTCACTTCTTTTGGTGTTGCTATGCACAT