Contig 007017:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS143C12Sequence626007017 (2)ref|XP_004252330.1|3e-122PREDICTED: dihydroxy-acid dehydratase, chloroplastic-like [Solanum lycopersicum
JMSF003C02Sequence384009171 (2)emb|CDP09384.1|8e-13unnamed protein product [Coffea canephora]741007017 (2)ref|XP_006349441.1|5e-88PREDICTED: putative dihydroxy-acid dehydratase, mitochondrial-like [Solanum tub

Alignment

This contig is upended


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JMFS143C12-                                              GATGATTTCCAAAAGGTCAGTGATG
                      ____________________________________________________________
consensus                                                GATGATTTCCAAAAGGTCAGTGATG
 
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JMFS143C12-           AGGTTCCTTTCCTAGCAGATTTGAAACCTAGTGGAAAATACGTCATGGAGGATTTGCACA
                      ____________________________________________________________
consensus             AGGTTCCTTTCCTAGCAGATTTGAAACCTAGTGGAAAATACGTCATGGAGGATTTGCACA
 
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JMFS143C12-           AGATTGGAGGCACACCTGCTGTCATTCGCTACCTATTGGAGCTTGGGTTGTTAGATGGTG
                      ____________________________________________________________
consensus             AGATTGGAGGCACACCTGCTGTCATTCGCTACCTATTGGAGCTTGGGTTGTTAGATGGTG
 
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JMFS143C12-           ATTGCATTACTGTCACAGGAAAGACCCTAGGTGAAAATGCAAAGCTATTCCCTTCTTTGG
                      ____________________________________________________________
consensus             ATTGCATTACTGTCACAGGAAAGACCCTAGGTGAAAATGCAAAGCTATTCCCTTCTTTGG
 
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JMFS143C12-           CAGAAGGTCAGCAAATTATAAGACCTTTGTCTAACCCCATCAAAGAAACTGGTCACATTC
                      ____________________________________________________________
consensus             CAGAAGGTCAGCAAATTATAAGACCTTTGTCTAACCCCATCAAAGAAACTGGTCACATTC
 
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JMFS143C12-           AAATATTGTATGGCAATCTTGCACCGGAGGGCTCTGTTGCAAAAATAACTGGAAAGGAAG
rJMSF003C02+                                                 CAAAAATAACTGGAAAGGAAG
                      ____________________________________________________________
consensus             AAATATTGTATGGCAATCTTGCACCGGAGGGCTCTGTTGCAAAAATAACTGGAAAGGAAG
 
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JMFS143C12-           GACTGTTTTTCTCAGGTCCTGCTCTTGTTTTTGAAGGAGAAGAGTCCATGATTGCAGCTA
rJMSF003C02+          GACTGTTTTTCTCAGGTCCTGCTCTTGTTTTTGAAGGAGAAGAGTCCATGATTGCAGCTA
                      ____________________________________________________________
consensus             GACTGTTTTTCTCAGGTCCTGCTCTTGTTTTTGAAGGAGAAGAGTCCATGATTGCAGCTA
 
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JMFS143C12-           TCTCAGAAGATCCAATGAGTTTTAAGGGGAAAGTAGTAGTGATTAGAGGGGAGGGTCCTA
rJMSF003C02+          TCTCAGAAGATCCAATGAGTTTTAAGGGGAAAGTAGTAGTGATTAGAGGGGAGGGTCCTA
                      ____________________________________________________________
consensus             TCTCAGAAGATCCAATGAGTTTTAAGGGGAAAGTAGTAGTGATTAGAGGGGAGGGTCCTA
 
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JMFS143C12-           AGGGGGGACCAGGCATGCCTGAGATGCTGACACCAACCAGTGCAATAATGGGAGCCGGTC
rJMSF003C02+          AGGGGGGACCAGGCATGCCTGAGATGCTGACACCAACCAGTGCAATAATGGGAGCCGGTC
                      ____________________________________________________________
consensus             AGGGGGGACCAGGCATGCCTGAGATGCTGACACCAACCAGTGCAATAATGGGAGCCGGTC
 
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JMFS143C12-           TAGGAAAGGATGTTGCATTGCTTACGGATGGAAGATTTTCTGGAGGTTCCCATGGATATG
rJMSF003C02+          TAGGAAAGGATGTTGCATTGCTTACGGATGGAAGATTTTCTGGAGGTTCCCATGGATATG
                      ____________________________________________________________
consensus             TAGGAAAGGATGTTGCATTGCTTACGGATGGAAGATTTTCTGGAGGTTCCCATGGATATG
 
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JMFS143C12-           TTGTTGGACACATATGTCCCGAGGCGCANGAAGGTGGTCCAATTGGTCTTGTTCGAAATG
rJMSF003C02+          TTGTTGGACACATATGTCCCGAGGCGCAGGAAGGTGGTCCAATTGGTCTTGTTCGAAATG
                      ____________________________________________________________
consensus             TTGTTGGACACATATGTCCCGAGGCGCAGGAAGGTGGTCCAATTGGTCTTGTTCGAAATG
 
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JMFS143C12-           G                                                           
rJMSF003C02+          GAGACATAATTACCGTAGACATTCAGAAAAAGAGGATGGACGTCCATTTAACAGATGAGG
                      ____________________________________________________________
consensus             GAGACATAATTACCGTAGACATTCAGAAAAAGAGGATGGACGTCCATTTAACAGATGAGG
 
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rJMSF003C02+          AATTGGAAGAGCGACGGAAGAATTGGAGCCCCCCTCCCTACAAGGCAGACAAAGGGGTTC
                      ____________________________________________________________
consensus             AATTGGAAGAGCGACGGAAGAATTGGAGCCCCCCTCCCTACAAGGCAGACAAAGGGGTTC
 
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rJMSF003C02+          TTTACAAGTACATAAAAAACGTGCAGTCTGCATCAACAGGATGCGTGACTGATGAGTAGA
                      ____________________________________________________________
consensus             TTTACAAGTACATAAAAAACGTGCAGTCTGCATCAACAGGATGCGTGACTGATGAGTAGA
 
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rJMSF003C02+          GGCGCGGTTTATATTCGGTGCGTAGTAAAACAATGAACCCCCGAGTCGTTAGAGGATTTG
                      ____________________________________________________________
consensus             GGCGCGGTTTATATTCGGTGCGTAGTAAAACAATGAACCCCCGAGTCGTTAGAGGATTTG
 
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rJMSF003C02+          AGTGAGGCGTTTGTGCGGCTTATTTAGGCCTCCATGATCCATAGAGGGTTACGATCATCT
                      ____________________________________________________________
consensus             AGTGAGGCGTTTGTGCGGCTTATTTAGGCCTCCATGATCCATAGAGGGTTACGATCATCT
 
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rJMSF003C02+          CGTGCAATTGATGTAATGGCTTGTTCTGGAATTGCAGAACCTGAATCTTGTTTCATCTTT
                      ____________________________________________________________
consensus             CGTGCAATTGATGTAATGGCTTGTTCTGGAATTGCAGAACCTGAATCTTGTTTCATCTTT
 
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rJMSF003C02+          GATGTTATGTAATGTTTTTTTGTTTTGTTTTGTTTTTTTTTCAAGGGTAATAAACACAAT
                      ____________________________________________________________
consensus             GATGTTATGTAATGTTTTTTTGTTTTGTTTTGTTTTTTTTTCAAGGGTAATAAACACAAT