Contig 007017:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS143C12Sequence626007017 (2)ref|XP_004252330.1|3e-122PREDICTED: dihydroxy-acid dehydratase, chloroplastic-like [Solanum lycopersicum
JMSF003C02Sequence384009171 (2)emb|CDP09384.1|8e-13unnamed protein product [Coffea canephora]741007017 (2)ref|XP_006349441.1|5e-88PREDICTED: putative dihydroxy-acid dehydratase, mitochondrial-like [Solanum tub

Alignment

This contig is upended


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JMFS143C12- GATGATTTCCAAAAGGTCAGTGATG
                      ____________________________________________________________
consensus GATGATTTCCAAAAGGTCAGTGATG
 
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JMFS143C12- AGGTTCCTTTCCTAGCAGATTTGAAACCTAGTGGAAAATACGTCATGGAGGATTTGCACA
                      ____________________________________________________________
consensus AGGTTCCTTTCCTAGCAGATTTGAAACCTAGTGGAAAATACGTCATGGAGGATTTGCACA
 
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JMFS143C12- AGATTGGAGGCACACCTGCTGTCATTCGCTACCTATTGGAGCTTGGGTTGTTAGATGGTG
                      ____________________________________________________________
consensus AGATTGGAGGCACACCTGCTGTCATTCGCTACCTATTGGAGCTTGGGTTGTTAGATGGTG
 
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JMFS143C12- ATTGCATTACTGTCACAGGAAAGACCCTAGGTGAAAATGCAAAGCTATTCCCTTCTTTGG
                      ____________________________________________________________
consensus ATTGCATTACTGTCACAGGAAAGACCCTAGGTGAAAATGCAAAGCTATTCCCTTCTTTGG
 
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JMFS143C12- CAGAAGGTCAGCAAATTATAAGACCTTTGTCTAACCCCATCAAAGAAACTGGTCACATTC
                      ____________________________________________________________
consensus CAGAAGGTCAGCAAATTATAAGACCTTTGTCTAACCCCATCAAAGAAACTGGTCACATTC
 
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JMFS143C12- AAATATTGTATGGCAATCTTGCACCGGAGGGCTCTGTTGCAAAAATAACTGGAAAGGAAG
rJMSF003C02+ CAAAAATAACTGGAAAGGAAG
                      ____________________________________________________________
consensus AAATATTGTATGGCAATCTTGCACCGGAGGGCTCTGTTGCAAAAATAACTGGAAAGGAAG
 
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JMFS143C12- GACTGTTTTTCTCAGGTCCTGCTCTTGTTTTTGAAGGAGAAGAGTCCATGATTGCAGCTA
rJMSF003C02+ GACTGTTTTTCTCAGGTCCTGCTCTTGTTTTTGAAGGAGAAGAGTCCATGATTGCAGCTA
                      ____________________________________________________________
consensus GACTGTTTTTCTCAGGTCCTGCTCTTGTTTTTGAAGGAGAAGAGTCCATGATTGCAGCTA
 
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JMFS143C12- TCTCAGAAGATCCAATGAGTTTTAAGGGGAAAGTAGTAGTGATTAGAGGGGAGGGTCCTA
rJMSF003C02+ TCTCAGAAGATCCAATGAGTTTTAAGGGGAAAGTAGTAGTGATTAGAGGGGAGGGTCCTA
                      ____________________________________________________________
consensus TCTCAGAAGATCCAATGAGTTTTAAGGGGAAAGTAGTAGTGATTAGAGGGGAGGGTCCTA
 
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JMFS143C12- AGGGGGGACCAGGCATGCCTGAGATGCTGACACCAACCAGTGCAATAATGGGAGCCGGTC
rJMSF003C02+ AGGGGGGACCAGGCATGCCTGAGATGCTGACACCAACCAGTGCAATAATGGGAGCCGGTC
                      ____________________________________________________________
consensus AGGGGGGACCAGGCATGCCTGAGATGCTGACACCAACCAGTGCAATAATGGGAGCCGGTC
 
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JMFS143C12- TAGGAAAGGATGTTGCATTGCTTACGGATGGAAGATTTTCTGGAGGTTCCCATGGATATG
rJMSF003C02+ TAGGAAAGGATGTTGCATTGCTTACGGATGGAAGATTTTCTGGAGGTTCCCATGGATATG
                      ____________________________________________________________
consensus TAGGAAAGGATGTTGCATTGCTTACGGATGGAAGATTTTCTGGAGGTTCCCATGGATATG
 
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JMFS143C12- TTGTTGGACACATATGTCCCGAGGCGCANGAAGGTGGTCCAATTGGTCTTGTTCGAAATG
rJMSF003C02+ TTGTTGGACACATATGTCCCGAGGCGCAGGAAGGTGGTCCAATTGGTCTTGTTCGAAATG
                      ____________________________________________________________
consensus TTGTTGGACACATATGTCCCGAGGCGCAGGAAGGTGGTCCAATTGGTCTTGTTCGAAATG
 
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JMFS143C12- G
rJMSF003C02+ GAGACATAATTACCGTAGACATTCAGAAAAAGAGGATGGACGTCCATTTAACAGATGAGG
                      ____________________________________________________________
consensus GAGACATAATTACCGTAGACATTCAGAAAAAGAGGATGGACGTCCATTTAACAGATGAGG
 
. : . : . : . : . : . :
rJMSF003C02+ AATTGGAAGAGCGACGGAAGAATTGGAGCCCCCCTCCCTACAAGGCAGACAAAGGGGTTC
                      ____________________________________________________________
consensus AATTGGAAGAGCGACGGAAGAATTGGAGCCCCCCTCCCTACAAGGCAGACAAAGGGGTTC
 
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rJMSF003C02+ TTTACAAGTACATAAAAAACGTGCAGTCTGCATCAACAGGATGCGTGACTGATGAGTAGA
                      ____________________________________________________________
consensus TTTACAAGTACATAAAAAACGTGCAGTCTGCATCAACAGGATGCGTGACTGATGAGTAGA
 
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rJMSF003C02+ GGCGCGGTTTATATTCGGTGCGTAGTAAAACAATGAACCCCCGAGTCGTTAGAGGATTTG
                      ____________________________________________________________
consensus GGCGCGGTTTATATTCGGTGCGTAGTAAAACAATGAACCCCCGAGTCGTTAGAGGATTTG
 
. : . : . : . : . : . :
rJMSF003C02+ AGTGAGGCGTTTGTGCGGCTTATTTAGGCCTCCATGATCCATAGAGGGTTACGATCATCT
                      ____________________________________________________________
consensus AGTGAGGCGTTTGTGCGGCTTATTTAGGCCTCCATGATCCATAGAGGGTTACGATCATCT
 
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rJMSF003C02+ CGTGCAATTGATGTAATGGCTTGTTCTGGAATTGCAGAACCTGAATCTTGTTTCATCTTT
                      ____________________________________________________________
consensus CGTGCAATTGATGTAATGGCTTGTTCTGGAATTGCAGAACCTGAATCTTGTTTCATCTTT
 
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rJMSF003C02+ GATGTTATGTAATGTTTTTTTGTTTTGTTTTGTTTTTTTTTCAAGGGTAATAAACACAAT
                      ____________________________________________________________
consensus GATGTTATGTAATGTTTTTTTGTTTTGTTTTGTTTTTTTTTCAAGGGTAATAAACACAAT