Contig 007011:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001P20Sequence244003507 (2)672007011 (2)ref|XP_009606567.1|2e-55PREDICTED: cinnamoyl-CoA reductase 2-like, partial [Nicotiana tomentosiformis]
JMSF010F01Sequence397003507 (2)ref|XP_009590172.1|6e-08PREDICTED: cinnamoyl-CoA reductase 2-like [Nicotiana tomentosiformis]750007011 (2)ref|XP_006347591.1|9e-82PREDICTED: cinnamoyl-CoA reductase 1-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF010F01+                                             CGCAGACAAGCNCCATAGATAAAGT
                      ____________________________________________________________
consensus                                                CGCAGACAAGCNCCATAGATAAAGT
 
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rJMSF010F01+          AGTTTTCACGTCCTCCGCCACGGCGGTGGTATGGGGAAGGGAACGCAACGCCGCCACCGT
                      ____________________________________________________________
consensus             AGTTTTCACGTCCTCCGCCACGGCGGTGGTATGGGGAAGGGAACGCAACGCCGCCACCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010F01+          GGCCGCTGCCGCTGCGGCGCATGCCCTCCACCCCCTGGATGAAAGAAACTGGAGCGACGT
                      ____________________________________________________________
consensus             GGCCGCTGCCGCTGCGGCGCATGCCCTCCACCCCCTGGATGAAAGAAACTGGAGCGACGT
 
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rJMSF010F01+          CAACTTCTGCAAGAACTTTAAGCTGTGGCATGGGCTGTCGAAGACGGTGGCGGAGAAGGC
rJMSF001P20+                                                          GGCGGAGAAGGC
                      ____________________________________________________________
consensus             CAACTTCTGCAAGAACTTTAAGCTGTGGCATGGGCTGTCGAAGACGGTGGCGGAGAAGGC
 
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rJMSF010F01+          GGCGTGGGCTCTGGCAATGGACAGAGAGGTAAACATGGTGTCCATTAATGGAGGCTTGTT
rJMSF001P20+          GGCGTGGGCTCTGGCAATGGACAGAGAGGTAAACATGGTGTCCATTAATGGAGGCTTGTT
                      ____________________________________________________________
consensus             GGCGTGGGCTCTGGCAATGGACAGAGAGGTAAACATGGTGTCCATTAATGGAGGCTTGTT
 
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rJMSF010F01+          AATGAGCCCTGGGCTGAGCATGAAAGATCCGTATCTGAAAGGCGCCGCAGAGATGTATGA
rJMSF001P20+          AATGAGCCCTGGGCTGAGCATGAAAGATCCGTATCTGAAAGGCGCCGCAGAGATGTATGA
                      ____________________________________________________________
consensus             AATGAGCCCTGGGCTGAGCATGAAAGATCCGTATCTGAAAGGCGCCGCAGAGATGTATGA
 
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rJMSF010F01+          GGGGGGATTTTTTGTAGCAGTAGACTTAGGATTCTTGGTTGATGCCCACATTTGTGTCTT
rJMSF001P20+          GGGGGGATTTTTTGTAGCAGTAGACTTAGGATTCTTGGTTGATGCCCNCATTTGTGTCTT
                      ____________________________________________________________
consensus             GGGGGGATTTTTTGTAGCAGTAGACTTAGGATTCTTGGTTGATGCCCACATTTGTGTCTT
 
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rJMSF010F01+          TGAGGATGTCTCATCTTATGGAAGATACCTATGCTTCAACTGCGTTATAAACTGCAGTGA
rJMSF001P20+          TGAGGATGTCTCATNTTATGGAAGATACCTATGCTTCAACCGCGTTATAAACTGCAGTGA
                      ____________________________________________________________
consensus             TGAGGATGTCTCATCTTATGGAAGATACCTATGCTTCAACTGCGTTATAAACTGCAGTGA
 
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rJMSF010F01+          AGACACTTCTAAGCTTGCCAAAATACTTTTATCAGTAAACCCTTCACATCCTCTATCTGT
rJMSF001P20+          AGACACTTNTAAGCTTGCCAAAATACTTTTATCAGTAAACCCTTCACATCCTCTATCTGT
                      ____________________________________________________________
consensus             AGACACTTCTAAGCTTGCCAAAATACTTTTATCAGTAAACCCTTCACATCCTCTATCTGT
 
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rJMSF010F01+          ACACTCCACTCAAAGCATGGAAATGGAAGATGACAGAGTGCACCAGCAAAAGATAAGCAA
rJMSF001P20+          ACACTCCACTCAAAGCATGGAAATGGAAGATGACAGAGTGCNCCAGCAAAAGATAAGCAA
                      ____________________________________________________________
consensus             ACACTCCACTCAAAGCATGGAAATGGAAGATGACAGAGTGCACCAGCAAAAGATAAGCAA
 
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rJMSF010F01+          CCAGAAATTAAGCAAGCTCATGTTAGGGTTTGAGAGTGGAGCACTTCAAATCCATATGTG
rJMSF001P20+          CCAGAAATTAAGCAAGCTCATGTTAGGGTTTGAGAGTGGAGCACTTCAAATCCATATGTG
                      ____________________________________________________________
consensus             CCAGAAATTAAGCAAGCTCATGTTAGGGTTTGAGAGTGGAGCACTTCAAATCCATATGTG
 
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rJMSF010F01+          AGACTGAGGGCTGACAGTATAAAGTATTTTCAGGAGCTGAGAATGATGACAGAGAGAGAG
rJMSF001P20+          AGACTGAGGGCTGACAGTATAAAGTATTTTCAGGAGCTGAGAATGATGACAGAGAGAGAG
                      ____________________________________________________________
consensus             AGACTGAGGGCTGACAGTATAAAGTATTTTCAGGAGCTGAGAATGATGACAGAGAGAGAG
 
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rJMSF010F01+          CTAGAAACTTACATATGCAATTATATATACAGACAAGATTTCATTAGATACACCACCCAG
rJMSF001P20+          CTAGAAACTTACATATGCAATTATATATACNGACAAGATTTCNTTAGATACNCCNCCCNG
                      ____________________________________________________________
consensus             CTAGAAACTTACATATGCAATTATATATACAGACAAGATTTCATTAGATACACCACCCAG
 
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rJMSF010F01+          TAGTA                                                       
rJMSF001P20+          TAGTATTATTTTNTGACTACCAAATGGCATATCATTCTTTGATGAAATTTGGGTTGTCTT
                      ____________________________________________________________
consensus             TAGTATTATTTTNTGACTACCAAATGGCATATCATTCTTTGATGAAATTTGGGTTGTCTT
 
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rJMSF001P20+          ACAATGCATTTTGTCNCAGTTCCCNGAATTGTATATGTAATGTTTAAAAAAAAAAATCAT
                      ____________________________________________________________
consensus             ACAATGCATTTTGTCNCAGTTCCCNGAATTGTATATGTAATGTTTAAAAAAAAAAATCAT