Contig 007009:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF026K05+                                                            TCCCCAAAGG
rJMSF002H16+                                                            TCCCCAAAGG
rJMSF001B01+                   GCTACTGAAATTTCTTCCATACTTCTAAGTTCTTTGGATTGTCCCCAAAGG
                      ____________________________________________________________
consensus                      GCTACTGAAATTTCTTCCATACTTCTAAGTTCTTTGGATTGTCCCCAAAGG
 
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rJMFF026K05+          CATTTCTTTCTGAAATGATGGTTGCTGGGAAAAGATTTTGTGAAGAAGATTGGTCAAAGT
rJMSF002H16+          CATTTCTTTCTGAAATGATGG-TGCTGGGAAAAGATTTTGTGAAGAAGATTGGTCAAAGT
rJMSF001B01+          CATTTCTTTCTGAAATGATGGTTGCTGGGAAAAGATTTTGTGAAGAAGATTGGTCAAAGT
                      ____________________________________________________________
consensus             CATTTCTTTCTGAAATGATGGTTGCTGGGAAAAGATTTTGTGAAGAAGATTGGTCAAAGT
 
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rJMFF026K05+          TGAGGACGGAATACCACTCACTAGCAGAGGAGGATATGCTTCATTATTGCTTCTCCTCAG
rJMSF002H16+          TGAGGACGGAATACCACTCACTAGCAGAGGAGGATATGCTTCATTATTGCTTCTCCTCAG
rJMSF001B01+          TGAGGACGGAATACCACTCACTAGCAGAGGAGGATATGCTTCATTATTGCTTCTCCTCAG
                      ____________________________________________________________
consensus             TGAGGACGGAATACCACTCACTAGCAGAGGAGGATATGCTTCATTATTGCTTCTCCTCAG
 
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rJMFF026K05+          CGTATATCGTGGCCTTACTTCACGACAGTCTTGGAATTGCTTTAGATGATGAAAGGATTG
rJMSF002H16+          CGTATATCGTGGCCTTACTTCACGACAGTCTTGGAATTGCTTTAGATGATGAAAGGATTG
rJMSF001B01+          CGTATATCGTGGCCTTACTTCACGACAGTCTTGGAATTGCTTTAGATGATGAAAGGATTG
                      ____________________________________________________________
consensus             CGTATATCGTGGCCTTACTTCACGACAGTCTTGGAATTGCTTTAGATGATGAAAGGATTG
 
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rJMFF026K05+          GATACGCTAATCAAGCGAACAACCTCCCCCTTGACTGGGCACTAGGAGCATTCATCTTGC
rJMSF002H16+          GATACGCTAATCAAGCGAACAACATCCCCCTTGACTGGGCACTAGGAGCATTCATCTTGC
rJMSF001B01+          GATACGCTAATCAAGCGAACAACATCCCCCTTGACTGGGCACTAGGAGCATTCATCTTGC
                      ____________________________________________________________
consensus             GATACGCTAATCAAGCGAACAACATCCCCCTTGACTGGGCACTAGGAGCATTCATCTTGC
 
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rJMFF026K05+          AGAGTAACTCCGATCTGGATGAAGAGTCCTCCAAGTGGTTTGCATTCATGTTCGGTGATG
rJMSF002H16+          AGAGTAACTCCGATCTGGATGAAGAGTCCTCCAAGTGGTTTGCATTCATGTTCGGTGATG
rJMSF001B01+          AGAGTAACTCCGATCTGGATGAAGAGTCCTCCAAGTGGTTTGCATTCATGTTCGGTGATG
                      ____________________________________________________________
consensus             AGAGTAACTCCGATCTGGATGAAGAGTCCTCCAAGTGGTTTGCATTCATGTTCGGTGATG
 
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rJMFF026K05+          ACTTGTCTATTTCAATACTCGTGCTTGGCATTTCCATTTTGTTGATTTTTGTGACATTGT
rJMSF002H16+          ACTTGTCTATTTCAATACTCGTGCTTGGCATTTCCATTTTGTTGATTTTTGTGACATTGT
rJMSF001B01+          ACTTGTCTATTTCAATACTCGTGCTTGGCATTTCCATTTTGTTGATTTTTGTGACATTGT
                      ____________________________________________________________
consensus             ACTTGTCTATTTCAATACTCGTGCTTGGCATTTCCATTTTGTTGATTTTTGTGACATTGT
 
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rJMFF026K05+          ATGTAAGGAAGTGGAGAAATCCTCAGTTGAAGACTGTGTATGATCTGGAGAAAGGAAAGT
rJMSF002H16+          ATGTAAGGAAGTGGAGAAATCCTCAGTTGAAGACTGTGTATGATCTGGAGAAAGGAAAGT
rJMSF001B01+          ATGTAAGGAAGTGGAGAAATCCTCAGTTGAAGACTGTGTATGATCTGGAGAAAGGAAAGT
                      ____________________________________________________________
consensus             ATGTAAGGAAGTGGAGAAATCCTCAGTTGAAGACTGTGTATGATCTGGAGAAAGGAAAGT
 
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rJMFF026K05+          ATATAGTTAAACGCGTTTCTAGGTACTCATAGCTTATCTCCTCCTTCAATAGGAGAGACT
rJMSF002H16+          ATATAGTTAAACGCGTTTCTAGGTACTCATAGCTTATCTCCTCCTTCAATAGGAGAGACT
rJMSF001B01+          ATATAGTTAAACGCGTTTCTAGGTACTCATAGCTTATCTCCTCCTTCAATAGGAGAGACT
                      ____________________________________________________________
consensus             ATATAGTTAAACGCGTTTCTAGGTACTCATAGCTTATCTCCTCCTTCAATAGGAGAGACT
 
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rJMFF026K05+          AAACGCGATCCCAAGGAGGACACGATCCAATTGGACTGGACATCACCCATTCACCCCCGC
rJMSF002H16+          AAACGCGATCCCAAGGAGGACACGATCCAATTGGACTGGACATCACCCATTCACCCCCGC
rJMSF001B01+          AAACGCGATCCCAAGGAGGACACGATCCAATTGGACTGGACATCACCCATTCACCCCCGC
                      ____________________________________________________________
consensus             AAACGCGATCCCAAGGAGGACACGATCCAATTGGACTGGACATCACCCATTCACCCCCGC
 
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rJMFF026K05+          CCTTTTTTGCCTGCCCGATTCAGTCGAAGCCATCCGTGCAAAAGGGCTTATTTTATGGAC
rJMSF002H16+          CCTTTTTTGCCTGCCCGATTCAGTCGAAGCCATCCGTGCAAAAGGGCTTATTTTATGGAC
rJMSF001B01+          CCTTTTTTGCCTGCCCGATTCAGTCGAAGCCATCCGTGCAAAAGGGCTTATTTTATGGAC
                      ____________________________________________________________
consensus             CCTTTTTTGCCTGCCCGATTCAGTCGAAGCCATCCGTGCAAAAGGGCTTATTTTATGGAC
 
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rJMFF026K05+          ACAAAACTAAGTTGTTGTAGATAGTATAGACAGCAGAATGTAGGGAGAAGCATGCTGTGA
rJMSF002H16+          ACAAAACTAAGTTGTTGTAGATAGTATAGACAGCAGAATGTAGGGAGAAGCATGCTGTGA
rJMSF001B01+          ACAAAACTAAGTTGTTGTAGATAGTATAGACAGCAGAATGTAGGGAGAAGCATGCTGTGA
                      ____________________________________________________________
consensus             ACAAAACTAAGTTGTTGTAGATAGTATAGACAGCAGAATGTAGGGAGAAGCATGCTGTGA
 
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rJMFF026K05+          CTGTTGAGGATAAATGGATAATTGGCCTGTGTATTCAAATAGTGTTAC            
rJMSF002H16+          CTGTTGAGGATAAATGGATAATTGGCCTGTGTATTCAAATAGTGTTAC            
rJMSF001B01+          CTGTTGAGGATAAATGGATAATTGGCCTGTGTATTCAAATAGTGTTACCTGTATAATGTT
                      ____________________________________________________________
consensus             CTGTTGAGGATAAATGGATAATTGGCCTGTGTATTCAAATAGTGTTACCTGTATAATGTT