Contig 007001:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005E07Sequence311010337 (8)ref|XP_009619069.1|2e-32PREDICTED: vam6/Vps39-like protein [Nicotiana tomentosiformis]724007001 (2)ref|XP_006348372.1|6e-125PREDICTED: vam6/Vps39-like protein-like [Solanum tuberosum]
JMFF050K12Sequence582010337 (8)ref|XP_009777137.1|1e-76PREDICTED: vam6/Vps39-like protein [Nicotiana sylvestris]616007001 (2)ref|XP_009777137.1|3e-74PREDICTED: vam6/Vps39-like protein [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF005E07+                  TGTTCCTTACCCATTGATACAGACAGCTGTCCTCCGAAATGTTCGCCGTCTT
                      ____________________________________________________________
consensus                     TGTTCCTTACCCATTGATACAGACAGCTGTCCTCCGAAATGTTCGCCGTCTT
 
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rJMFF005E07+          GTTCAAAGCAACAATGCTGTAATTGTTGCTCTAGAGAACTCTGTTTTTGGATTCTTTCCT
                      ____________________________________________________________
consensus             GTTCAAAGCAACAATGCTGTAATTGTTGCTCTAGAGAACTCTGTTTTTGGATTCTTTCCT
 
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rJMFF005E07+          GTTCCTTTAGGTGCACAGATTGTACAACTAACTGCATCTGGCAACTTTGAGGAGGCCTTG
                      ____________________________________________________________
consensus             GTTCCTTTAGGTGCACAGATTGTACAACTAACTGCATCTGGCAACTTTGAGGAGGCCTTG
 
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rJMFF005E07+          GCTTTGTGCAAATTGCTTCCACCAGAAGATTCCAGCCTTAGAGCTGCAAAGGAACAGTCA
rJMFF050K12+                                                      TGCAAAGGAACAGTCA
                      ____________________________________________________________
consensus             GCTTTGTGCAAATTGCTTCCACCAGAAGATTCCAGCCTTAGAGCTGCAAAGGAACAGTCA
 
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rJMFF005E07+          ATTCATATAAGATATGCACACTATTTATATGAAAATGGGAGCTATGAGGAGGCCATGGAA
rJMFF050K12+          ATTCATGTAAGATATGCACACTATTTATATGAAAATGGGAGCTATGAGGAGGCCATGGAA
                      ____________________________________________________________
consensus             ATTCATGTAAGATATGCACACTATTTATATGAAAATGGGAGCTATGAGGAGGCCATGGAA
 
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rJMFF005E07+          CATTTTCTGGCATCTCAAGTAGAAATTACTTATGTTCTTTCTTTATACCCATCCATCATT
rJMFF050K12+          CATTTTCTGGCATCTCAAGTAGAAATTACTTATGTTCTTTCTTTATACCCATCCATCATT
                      ____________________________________________________________
consensus             CATTTTCTGGCATCTCAAGTAGAAATTACTTATGTTCTTTCTTTATACCCATCCATCATT
 
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rJMFF005E07+          CTTCCCAAATCTGCAGTAATTCCTGAGCCAGAGAAATTTGTGGATATGAGTGGGGATTAT
rJMFF050K12+          CTTCCCAAATCTGCAGTAATTCCTGAGCCAGAGAAATTTGTGGATATGAGTGGGGATTAT
                      ____________________________________________________________
consensus             CTTCCCAAATCTGCAGTAATTCCTGAGCCAGAGAAATTTGTGGATATGAGTGGGGATTAT
 
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rJMFF005E07+          CCAAACCTTTCCAGAGGTTCCTCTAGCTTGTCGGATGATATGGAATCAAATACTCATATA
rJMFF050K12+          CCAAACCTTTCCAGAGGTTCCTCTAGCTTGTCGGATGATATGGAATCAAATACTCATATA
                      ____________________________________________________________
consensus             CCAAACCTTTCCAGAGGTTCCTCTAGCTTGTCGGATGATATGGAATCAAATACTCATATA
 
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rJMFF005E07+          TTGGAGTCTGATGAGACAGATATTGAATCCAAAAAAATGAGCCACAATACTTTGATGGCT
rJMFF050K12+          TTGGAGTCTGATGAGACAGATATTGAATCCAAAAAAATGAGCCACAATACTTTGATGGCT
                      ____________________________________________________________
consensus             TTGGAGTCTGATGAGACAGATATTGAATCCAAAAAAATGAGCCACAATACTTTGATGGCT
 
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rJMFF005E07+          CTTATTAAGTTTCTGCAGAAAAAAAGATATGGTATTATTGAAAAAGCTACTGCCGAGGGA
rJMFF050K12+          CTTATTAAGTTTCTGCAGAAAAAAAGATATGGTATTATTGAAAAAGCTACTGCCGAGGGA
                      ____________________________________________________________
consensus             CTTATTAAGTTTCTGCAGAAAAAAAGATATGGTATTATTGAAAAAGCTACTGCCGAGGGA
 
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rJMFF005E07+          ACTGAAGAGGTTGTTTCAGATGCTGTAGGAGATAGTTTTGTTTCCTATGGGACTAGTCGG
rJMFF050K12+          ACTGAAGAGGTTGTTTCAGATGCTGTAGGAGATAGTTTTGTTTCCTATGGGACTAGTCGG
                      ____________________________________________________________
consensus             ACTGAAGAGGTTGTTTCAGATGCTGTAGGAGATAGTTTTGTTTCCTATGGGACTAGTCGG
 
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rJMFF005E07+          TCCAAGAAAACAATCAAGGTAGCTTTTATTTTTATCCTCTTGGGAATTTTGTAATCAACA
rJMFF050K12+          TCCAAGAAAACAATCAAGGTAGCTTTTATTTTTATCCTCTTGGGAATTTTGTAATCAACA
                      ____________________________________________________________
consensus             TCCAAGAAAACAATCAAGGTAGCTTTTATTTTTATCCTCTTGGGAATTTTGTAATCAACA
 
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rJMFF005E07+          GTTATTGATATA                                                
rJMFF050K12+          GTTATTGATATAGTGAATGTATGTGACTCTATATAGCATGTGTATTACAGCCAAATGAAT
                      ____________________________________________________________
consensus             GTTATTGATATAGTGAATGTATGTGACTCTATATAGCATGTGTATTACAGCCAAATGAAT
 
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rJMFF050K12+          TTGGTTTACTATACATTTATTTCATGAAGGGGTTAATGGCAAAGGAACATATTTGCTAAC
                      ____________________________________________________________
consensus             TTGGTTTACTATACATTTATTTCATGAAGGGGTTAATGGCAAAGGAACATATTTGCTAAC