Contig 007000:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050E19Sequence596004673 (5)ref|XP_011084423.1|2e-23PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Sesamum i555007000 (4)emb|CDP05185.1|3e-45unnamed protein product [Coffea canephora]
JMSF001O09Sequence206004673 (5)719007000 (4)emb|CDP05185.1|3e-97unnamed protein product [Coffea canephora]
JMSF029M15Sequence689004673 (5)gb|EYU19553.1|9e-42hypothetical protein MIMGU_mgv1a0019021mg, partial [Erythranthe guttata]735007000 (4)emb|CDP05185.1|1e-91unnamed protein product [Coffea canephora]
JMSF030F21Sequence634004673 (5)gb|EYU19553.1|1e-31hypothetical protein MIMGU_mgv1a0019021mg, partial [Erythranthe guttata]651007000 (4)emb|CDP05185.1|6e-99unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF030F21+ CCATGTTGCTCCCTTAAAGCTTGTTTTGGTACATGGCACAGCTG
rJMSF001O09+ CATGTTGCTCCCTTAAAGCTTGTTTTGGTACATGGCACAGCTG
rJMSF029M15+ TTTTGGTACATGGCACAGCTG
                      ____________________________________________________________
consensus CCATGTTGCTCCCTTAAAGCTTGTTTTGGTACATGGCACAGCTG
 
. : . : . : . : . : . :
rJMSF030F21+ AAGCAACAGAGCATTTGAAACAACATTGTCTGAAGCATGTATGCCCACATGTTTATGCTC
rJMSF001O09+ AAGCAACAGAGCATTTGAAACAACATTGTCTGAAGCATGTATGCCCACATGTTTATGCTC
rJMSF029M15+ AAGCAACAGAGCATTTGAAACAACATTGTCTGAAGCATGTATGCCCACATGTTTATGCTC
                      ____________________________________________________________
consensus AAGCAACAGAGCATTTGAAACAACATTGTCTGAAGCATGTATGCCCACATGTTTATGCTC
 
. : . : . : . : . : . :
rJMSF030F21+ CCCAAATTGAAGAAACTATTGATGTTACTTCAGATTTGTGTGCTTATAAGGTGCAACTAT
rJMSF001O09+ CCCAAATTGAAGAAACTATTGATGTTACTTCAGATTTGTGTGCTTATAAGGTGCAACTAT
rJMSF029M15+ ACCAAATTGAAGAAACTATTGATGTTACTTCAGATTTGTGTGCTTATAAGGTGCAACTAT
                      ____________________________________________________________
consensus CCCAAATTGAAGAAACTATTGATGTTACTTCAGATTTGTGTGCTTATAAGGTGCAACTAT
 
. : . : . : . : . : . :
rJMSF030F21+ CCGAGAAATTAATGAGCAATGTGCTGTTTAAGAAACTTGGAGACTATGAAATAGCATGGG
rJMSF001O09+ CCGAGAAATTAATGAGCAATGTGCTGTTTAAGAAACTTGGAGACTATGAAATAGCATGTG
rJMSF029M15+ CCGAGAAATTAATGAGCAATGTGCTGTTTAAGAAACTTGGAGACTATGAAATAGCATGGG
rJMFF050E19+ ATGAAATAGCATGGG
                      ____________________________________________________________
consensus CCGAGAAATTAATGAGCAATGTGCTGTTTAAGAAACTTGGAGACTATGAAATAGCATGGG
 
. : . : . : . : . : . :
rJMSF030F21+ TTGATGCTGAAGTGGGGAAAACAGACAGTGGCATGTTGTCTTTACTTCCTCTTTCAGATG
rJMSF001O09+ TTGATGCTGAAGTGGGGAAAACAGACAGTGGCATGTTGTCTTTACTTCCTCTTTCAGATG
rJMSF029M15+ TTGATGCTGAAGTGGGGAAAACAGACAGTGGCATGTTGTCTTTACTTCCTCTTTCAGATG
rJMFF050E19+ TTGATGCTGAAGTGGGGAAAACAGACAGTGGCATGTTGTCTTTACTTCCTCTTTCAGATG
                      ____________________________________________________________
consensus TTGATGCTGAAGTGGGGAAAACAGACAGTGGCATGTTGTCTTTACTTCCTCTTTCAGATG
 
. : . : . : . : . : . :
rJMSF030F21+ CTGCTCCACCACATAAGACAGTACTTGTTGGAGACCTAAAACTCTCAGATTTCAAGCAGT
rJMSF001O09+ CTGCTCCACCACATAAGACAGTACTTGTTGGAGACCTAAAACTCTCAGATTTCAAGCAGT
rJMSF029M15+ CTGCTCCACCACATAAGACAGTACTTGTTGGAGACCTAAAACTCTCAGATTTCAAGCAGT
rJMFF050E19+ CTGCTCCACCACATAAGACAGTACTTGTTGGAGACCTAAAACTCTCAGATTTCAAGCAGT
                      ____________________________________________________________
consensus CTGCTCCACCACATAAGACAGTACTTGTTGGAGACCTAAAACTCTCAGATTTCAAGCAGT
 
. : . : . : . : . : . :
rJMSF030F21+ TTCTTGCAAGCAAGGGTGTGCAGGTAGAATTTGCAGGTGGAGCCTTACGGTGTGGGGAGT
rJMSF001O09+ TTCTTGCAAGCAAGGGTGTGCAGGTAGAATTTGCAGGTGGAGCCTTACGGTGTGGGGAGT
rJMSF029M15+ TTCTTGCAAGCAAGGGTGTGCAGGTAGAATTTGCAGGTGGAGCCTTACGGTGTGGGGAGT
rJMFF050E19+ TTCTTGCAAGCAAGGGTGTGCAGGTAGAATTTGCAGGTGGAGCCTTACGGTGTGGGGAGT
                      ____________________________________________________________
consensus TTCTTGCAAGCAAGGGTGTGCAGGTAGAATTTGCAGGTGGAGCCTTACGGTGTGGGGAGT
 
. : . : . : . : . : . :
rJMSF030F21+ ATGTGACTTTGCGAAAAGTAGGAGATGCAAGCCAAAGGGGTGGTGCTGCTGCTGCTGCTA
rJMSF001O09+ ATGTGACTTTGCGAAAAGTAGGAGATGCAAGCCAAAGGGGTGGTGCTGCTGCTGCTGCTA
rJMSF029M15+ ATGTGACTTTGCGAAAAGTAGGAGATGCAAGCCAAAGGGGTGGTGCTGCTGCTGCTGCTA
rJMFF050E19+ ATGTGACTTTGCGAAAAGTAGGAGATGCAAGCCAAAGGGGTGGTGCTGCTGCTGCTGCTA
                      ____________________________________________________________
consensus ATGTGACTTTGCGAAAAGTAGGAGATGCAAGCCAAAGGGGTGGTGCTGCTGCTGCTGCTA
 
. : . : . : . : . : . :
rJMSF030F21+ TACAACATATCATTCTTGAGGGGCCACTTTCTGAAGAATATTACACAATTCGGGAGTATT
rJMSF001O09+ TACAACATATCATTCTTGAGGGGCCACTTTCTGAAGAATATTACACAATTCGGGAGTATT
rJMSF029M15+ TACAACATATCATTCTTGAGGGGCCACTTTCTGAAGAATATTACACAATTCGGGAGTATT
rJMFF050E19+ TACAACATATCATTCTTGAGGGGCCACTTTCTGAAGAATATTACACAATTCGGGAGTATT
                      ____________________________________________________________
consensus TACAACATATCATTCTTGAGGGGCCACTTTCTGAAGAATATTACACAATTCGGGAGTATT
 
. : . : . : . : . : . :
rJMSF030F21+ TATATTCACAATTCTATTCCCTCTAAATCTGAGTTAGAAGAGATCTTCATTTGATATGTT
rJMSF001O09+ TATATTCACAATTCTATTCCCTCTAAATCTGAGTTAGAAGAGATCTTCATTTGATATGTT
rJMSF029M15+ TATATTCACAATTCTATTCCCTCTAAATCTGAGTTAGAAGAGATCTTCATTTGATATGTT
rJMFF050E19+ TATATTCACAATTCTATTCCCTCTAAATCTGAGTTAGAAGAGATCTTCATTTGATATGTT
                      ____________________________________________________________
consensus TATATTCACAATTCTATTCCCTCTAAATCTGAGTTAGAAGAGATCTTCATTTGATATGTT
 
. : . : . : . : . : . :
rJMSF030F21+ CAAGTTTGGCTTATTTTTCGCTCTAGGCTGAATGTATCACACAGGAC
rJMSF001O09+ CAAGTTTGGCTTATTTTTCGCTCTAGGCTGAATGTATCACACAGGACAGGCTGGTATGCA
rJMSF029M15+ CAAGTTTGGCTTATTTTTCGCTCTAGGCTGAATGTATCACACAGGACAGGCTGGTATGCA
rJMFF050E19+ CAAGTTTGGCTTATTTTTCGCTCTAGGCTGAATGTATCACACAGGACAGGCTGGTATGCA
                      ____________________________________________________________
consensus CAAGTTTGGCTTATTTTTCGCTCTAGGCTGAATGTATCACACAGGACAGGCTGGTATGCA
 
. : . : . : . : . : . :
rJMSF001O09+ TTTGCCTATGTAACAAGGATTGTATGCATTCAATCACCTTAATTTTTGTCAATATCGCTT
rJMSF029M15+ TTTGCCTATGTAACAAGGATTGTATGCATTCAATCACCTTAATTTTTGTCAATATCGCTT
rJMFF050E19+ TTTGCCTATGTAACAAGGATTGTATGCATTCAATCACCTTAATTTTTGTCAATATCGCTT
                      ____________________________________________________________
consensus TTTGCCTATGTAACAAGGATTGTATGCATTCAATCACCTTAATTTTTGTCAATATCGCTT
 
. : . : . : . : . : . :
rJMSF001O09+ TCC
rJMSF029M15+ TCCAAGAGGTTTGTATTGTACTGCGACACTCAATTGATTTCATAAAC
rJMFF050E19+ TCCAAGAGGTTTGTATTGTACTGCGACACTCAATTGATTTCATAAACAATGTTTGGTACC
                      ____________________________________________________________
consensus TCCAAGAGGTTTGTATTGTACTGCGACACTCAATTGATTTCATAAACAATGTTTGGTACC