clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF050E19 | Sequence | 596 | 004673 (5) | ref|XP_011084423.1| | 2e-23 | PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Sesamum i | 555 | 007000 (4) | emb|CDP05185.1| | 3e-45 | unnamed protein product [Coffea canephora] |
JMSF001O09 | Sequence | 206 | 004673 (5) | 719 | 007000 (4) | emb|CDP05185.1| | 3e-97 | unnamed protein product [Coffea canephora] | |||
JMSF029M15 | Sequence | 689 | 004673 (5) | gb|EYU19553.1| | 9e-42 | hypothetical protein MIMGU_mgv1a0019021mg, partial [Erythranthe guttata] | 735 | 007000 (4) | emb|CDP05185.1| | 1e-91 | unnamed protein product [Coffea canephora] |
JMSF030F21 | Sequence | 634 | 004673 (5) | gb|EYU19553.1| | 1e-31 | hypothetical protein MIMGU_mgv1a0019021mg, partial [Erythranthe guttata] | 651 | 007000 (4) | emb|CDP05185.1| | 6e-99 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF030F21+ CCATGTTGCTCCCTTAAAGCTTGTTTTGGTACATGGCACAGCTG
rJMSF001O09+ CATGTTGCTCCCTTAAAGCTTGTTTTGGTACATGGCACAGCTG
rJMSF029M15+ TTTTGGTACATGGCACAGCTG
____________________________________________________________
consensus CCATGTTGCTCCCTTAAAGCTTGTTTTGGTACATGGCACAGCTG
. : . : . : . : . : . :
rJMSF030F21+ AAGCAACAGAGCATTTGAAACAACATTGTCTGAAGCATGTATGCCCACATGTTTATGCTC
rJMSF001O09+ AAGCAACAGAGCATTTGAAACAACATTGTCTGAAGCATGTATGCCCACATGTTTATGCTC
rJMSF029M15+ AAGCAACAGAGCATTTGAAACAACATTGTCTGAAGCATGTATGCCCACATGTTTATGCTC
____________________________________________________________
consensus AAGCAACAGAGCATTTGAAACAACATTGTCTGAAGCATGTATGCCCACATGTTTATGCTC
. : . : . : . : . : . :
rJMSF030F21+ CCCAAATTGAAGAAACTATTGATGTTACTTCAGATTTGTGTGCTTATAAGGTGCAACTAT
rJMSF001O09+ CCCAAATTGAAGAAACTATTGATGTTACTTCAGATTTGTGTGCTTATAAGGTGCAACTAT
rJMSF029M15+ ACCAAATTGAAGAAACTATTGATGTTACTTCAGATTTGTGTGCTTATAAGGTGCAACTAT
____________________________________________________________
consensus CCCAAATTGAAGAAACTATTGATGTTACTTCAGATTTGTGTGCTTATAAGGTGCAACTAT
. : . : . : . : . : . :
rJMSF030F21+ CCGAGAAATTAATGAGCAATGTGCTGTTTAAGAAACTTGGAGACTATGAAATAGCATGGG
rJMSF001O09+ CCGAGAAATTAATGAGCAATGTGCTGTTTAAGAAACTTGGAGACTATGAAATAGCATGTG
rJMSF029M15+ CCGAGAAATTAATGAGCAATGTGCTGTTTAAGAAACTTGGAGACTATGAAATAGCATGGG
rJMFF050E19+ ATGAAATAGCATGGG
____________________________________________________________
consensus CCGAGAAATTAATGAGCAATGTGCTGTTTAAGAAACTTGGAGACTATGAAATAGCATGGG
. : . : . : . : . : . :
rJMSF030F21+ TTGATGCTGAAGTGGGGAAAACAGACAGTGGCATGTTGTCTTTACTTCCTCTTTCAGATG
rJMSF001O09+ TTGATGCTGAAGTGGGGAAAACAGACAGTGGCATGTTGTCTTTACTTCCTCTTTCAGATG
rJMSF029M15+ TTGATGCTGAAGTGGGGAAAACAGACAGTGGCATGTTGTCTTTACTTCCTCTTTCAGATG
rJMFF050E19+ TTGATGCTGAAGTGGGGAAAACAGACAGTGGCATGTTGTCTTTACTTCCTCTTTCAGATG
____________________________________________________________
consensus TTGATGCTGAAGTGGGGAAAACAGACAGTGGCATGTTGTCTTTACTTCCTCTTTCAGATG
. : . : . : . : . : . :
rJMSF030F21+ CTGCTCCACCACATAAGACAGTACTTGTTGGAGACCTAAAACTCTCAGATTTCAAGCAGT
rJMSF001O09+ CTGCTCCACCACATAAGACAGTACTTGTTGGAGACCTAAAACTCTCAGATTTCAAGCAGT
rJMSF029M15+ CTGCTCCACCACATAAGACAGTACTTGTTGGAGACCTAAAACTCTCAGATTTCAAGCAGT
rJMFF050E19+ CTGCTCCACCACATAAGACAGTACTTGTTGGAGACCTAAAACTCTCAGATTTCAAGCAGT
____________________________________________________________
consensus CTGCTCCACCACATAAGACAGTACTTGTTGGAGACCTAAAACTCTCAGATTTCAAGCAGT
. : . : . : . : . : . :
rJMSF030F21+ TTCTTGCAAGCAAGGGTGTGCAGGTAGAATTTGCAGGTGGAGCCTTACGGTGTGGGGAGT
rJMSF001O09+ TTCTTGCAAGCAAGGGTGTGCAGGTAGAATTTGCAGGTGGAGCCTTACGGTGTGGGGAGT
rJMSF029M15+ TTCTTGCAAGCAAGGGTGTGCAGGTAGAATTTGCAGGTGGAGCCTTACGGTGTGGGGAGT
rJMFF050E19+ TTCTTGCAAGCAAGGGTGTGCAGGTAGAATTTGCAGGTGGAGCCTTACGGTGTGGGGAGT
____________________________________________________________
consensus TTCTTGCAAGCAAGGGTGTGCAGGTAGAATTTGCAGGTGGAGCCTTACGGTGTGGGGAGT
. : . : . : . : . : . :
rJMSF030F21+ ATGTGACTTTGCGAAAAGTAGGAGATGCAAGCCAAAGGGGTGGTGCTGCTGCTGCTGCTA
rJMSF001O09+ ATGTGACTTTGCGAAAAGTAGGAGATGCAAGCCAAAGGGGTGGTGCTGCTGCTGCTGCTA
rJMSF029M15+ ATGTGACTTTGCGAAAAGTAGGAGATGCAAGCCAAAGGGGTGGTGCTGCTGCTGCTGCTA
rJMFF050E19+ ATGTGACTTTGCGAAAAGTAGGAGATGCAAGCCAAAGGGGTGGTGCTGCTGCTGCTGCTA
____________________________________________________________
consensus ATGTGACTTTGCGAAAAGTAGGAGATGCAAGCCAAAGGGGTGGTGCTGCTGCTGCTGCTA
. : . : . : . : . : . :
rJMSF030F21+ TACAACATATCATTCTTGAGGGGCCACTTTCTGAAGAATATTACACAATTCGGGAGTATT
rJMSF001O09+ TACAACATATCATTCTTGAGGGGCCACTTTCTGAAGAATATTACACAATTCGGGAGTATT
rJMSF029M15+ TACAACATATCATTCTTGAGGGGCCACTTTCTGAAGAATATTACACAATTCGGGAGTATT
rJMFF050E19+ TACAACATATCATTCTTGAGGGGCCACTTTCTGAAGAATATTACACAATTCGGGAGTATT
____________________________________________________________
consensus TACAACATATCATTCTTGAGGGGCCACTTTCTGAAGAATATTACACAATTCGGGAGTATT
. : . : . : . : . : . :
rJMSF030F21+ TATATTCACAATTCTATTCCCTCTAAATCTGAGTTAGAAGAGATCTTCATTTGATATGTT
rJMSF001O09+ TATATTCACAATTCTATTCCCTCTAAATCTGAGTTAGAAGAGATCTTCATTTGATATGTT
rJMSF029M15+ TATATTCACAATTCTATTCCCTCTAAATCTGAGTTAGAAGAGATCTTCATTTGATATGTT
rJMFF050E19+ TATATTCACAATTCTATTCCCTCTAAATCTGAGTTAGAAGAGATCTTCATTTGATATGTT
____________________________________________________________
consensus TATATTCACAATTCTATTCCCTCTAAATCTGAGTTAGAAGAGATCTTCATTTGATATGTT
. : . : . : . : . : . :
rJMSF030F21+ CAAGTTTGGCTTATTTTTCGCTCTAGGCTGAATGTATCACACAGGAC
rJMSF001O09+ CAAGTTTGGCTTATTTTTCGCTCTAGGCTGAATGTATCACACAGGACAGGCTGGTATGCA
rJMSF029M15+ CAAGTTTGGCTTATTTTTCGCTCTAGGCTGAATGTATCACACAGGACAGGCTGGTATGCA
rJMFF050E19+ CAAGTTTGGCTTATTTTTCGCTCTAGGCTGAATGTATCACACAGGACAGGCTGGTATGCA
____________________________________________________________
consensus CAAGTTTGGCTTATTTTTCGCTCTAGGCTGAATGTATCACACAGGACAGGCTGGTATGCA
. : . : . : . : . : . :
rJMSF001O09+ TTTGCCTATGTAACAAGGATTGTATGCATTCAATCACCTTAATTTTTGTCAATATCGCTT
rJMSF029M15+ TTTGCCTATGTAACAAGGATTGTATGCATTCAATCACCTTAATTTTTGTCAATATCGCTT
rJMFF050E19+ TTTGCCTATGTAACAAGGATTGTATGCATTCAATCACCTTAATTTTTGTCAATATCGCTT
____________________________________________________________
consensus TTTGCCTATGTAACAAGGATTGTATGCATTCAATCACCTTAATTTTTGTCAATATCGCTT
. : . : . : . : . : . :
rJMSF001O09+ TCC
rJMSF029M15+ TCCAAGAGGTTTGTATTGTACTGCGACACTCAATTGATTTCATAAAC
rJMFF050E19+ TCCAAGAGGTTTGTATTGTACTGCGACACTCAATTGATTTCATAAACAATGTTTGGTACC
____________________________________________________________
consensus TCCAAGAGGTTTGTATTGTACTGCGACACTCAATTGATTTCATAAACAATGTTTGGTACC