Contig 006999:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050E05Sequence637007798 (5)607006999 (4)
JMSF011P21Sequence273007798 (5)709006999 (4)ref|XP_002325473.1|2e-43phosphatase 2C family protein [Populus trichocarpa] gb|ABK95223.1| unknown [Popu
JMSF030M17Sequence629007798 (5)664006999 (4)ref|XP_010111089.1|4e-18putative protein phosphatase 2C 33 [Morus notabilis] gb|EXC29951.1| putative pro
JMSF042D09Sequence730007798 (5)741006999 (4)ref|XP_002325473.1|9e-34phosphatase 2C family protein [Populus trichocarpa] gb|ABK95223.1| unknown [Popu

Alignment

This contig is upended


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rJMSF011P21+                                                            CTGTACCAGA
rJMSF042D09+                                                           TCTGTACCAGA
                      ____________________________________________________________
consensus                                                              TCTGTACCAGA
 
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rJMSF011P21+          TGTTTCATACAGGCAGTTAACAGAGAGAGATGAATTTATTATCTTGGCAACAGAT-GGGA
rJMSF042D09+          TGTTTCATACAGGCAGTTAACAGAGAGAGATGAATTTATTATCTTGGCAACAGATGGGGA
                      ____________________________________________________________
consensus             TGTTTCATACAGGCAGTTAACAGAGAGAGATGAATTTATTATCTTGGCAACAGATGGGGA
 
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rJMSF011P21+          TTTGGGATGTGCTTTCAAACGAAGAGGTGGTAGAGATTGTGGGTTCAGCGCCTGCACGCT
rJMSF042D09+          TTTGGGATGTGCTTTCAAACGAAGAGGTGGTAGAGATTGTGGGTTCAGCGCCTGCACGCT
                      ____________________________________________________________
consensus             TTTGGGATGTGCTTTCAAACGAAGAGGTGGTAGAGATTGTGGGTTCAGCGCCTGCACGCT
 
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rJMSF011P21+          CATCTGCAGCTAAACTCCTGGTTGAAACAGCTGTTCAAGGCTGGAGGACCAAATACCCAA
rJMSF042D09+          CATCTGCAGCTAAACTCCTGGTTGAAACAGCTGTTCAAGGCTGGAGGACCAAATACCCAA
rJMSF030M17+                                   AACAGCTGTTCAAGGCTGGAGGACCAAATACCCAA
                      ____________________________________________________________
consensus             CATCTGCAGCTAAACTCCTGGTTGAAACAGCTGTTCAAGGCTGGAGGACCAAATACCCAA
 
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rJMSF011P21+          CTTCCAAAGTCGATGACTGTGCTGTTGTCTGCCTCTTCCTCAATTCACACTCAGACGATA
rJMSF042D09+          CTTCCAAAGTCGATGACTGTGCTGTTGTCTGCCTCTTCCTCAATTCACACTCAGACGATA
rJMSF030M17+          CTTCCAAAGTCGATGACTGTGCTGTTGTCTGCCTCTTCCTCAATTCACACTCAGACGATA
                      ____________________________________________________________
consensus             CTTCCAAAGTCGATGACTGTGCTGTTGTCTGCCTCTTCCTCAATTCACACTCAGACGATA
 
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rJMSF011P21+          TATCTTCTGCCTTCAATGACAATGGGAAGGTAAAGGACCACTCGAGCACTGCTCGAAACG
rJMSF042D09+          TATCTTCTGCCTTCAATGACAATGGGAAGGTAAAGGACCACTCGAGCACTGCTCGAAACG
rJMSF030M17+          TATCTTCTGCCTTCAATGACAATGGGAAGGTAAAGGACCACTCGAGCACTGCTCGAAACG
rJMFF050E05+                                                               CGAAACG
                      ____________________________________________________________
consensus             TATCTTCTGCCTTCAATGACAATGGGAAGGTAAAGGACCACTCGAGCACTGCTCGAAACG
 
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rJMSF011P21+          GTGAAGATGTCGAGGAATCTTTAGAAGAGAGCAACGAGGAAACCTCCGAGCAAGAGTTAG
rJMSF042D09+          GTGAAGATGTCGAGGAATCTTTAGAAGAGAGCAACGAGGAAACCTCCGAGCAAGAGTTAG
rJMSF030M17+          GTGAAGATGTCGAGGAATCTTTAGAAGAGAGCAACGAGGAAACCTCCGAGCAAGAGTTAG
rJMFF050E05+          GTGAAGATGTCGAGGAATCTTTAGAAGAGAGCAACGAGGAAACCTCCGAGCAAGAGTTAG
                      ____________________________________________________________
consensus             GTGAAGATGTCGAGGAATCTTTAGAAGAGAGCAACGAGGAAACCTCCGAGCAAGAGTTAG
 
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rJMSF011P21+          GTTGGAAAGACTGGTCTTCCCTTGAAGGGGTGTCTCGTGCAGACACCTTATTGACCTTGC
rJMSF042D09+          GTTGGAAAGACTGGTCTTCCCTTGAAGGGGTGTCTCGTGCAGACACCTTATTGACCTTGC
rJMSF030M17+          GTTGGAAAGACTGGTCTTCCCTTGAAGGGGTGTCTCGTGCAGACACCTTATTGACCTTGC
rJMFF050E05+          GTTGGAAAGACTGGTCTTCCCTTGAAGGGGTGTCTCGTGCAGACACCTTATTGACCTTGC
                      ____________________________________________________________
consensus             GTTGGAAAGACTGGTCTTCCCTTGAAGGGGTGTCTCGTGCAGACACCTTATTGACCTTGC
 
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rJMSF011P21+          CAAGGTTTGACCCGGAAAAGGAGGAAGATAAAACTGCAGCAGGAGGAGGGACAAAGACAA
rJMSF042D09+          CAAGGTTTGACCCGGAAAAGGAGGAAGATAAAACTGCAGCAGGAGGAGGGACAAAGACAA
rJMSF030M17+          CAAGGTTTGACCCGGAAAAGGAGGAAGATAAAACTGCAGCAGGAGGAGGGACAAAGACAA
rJMFF050E05+          CAAGGTTTGACCCGGAAAAGGAGGAAGATAAAACTGCAGCAGGAGGAGGGACAAAGACAA
                      ____________________________________________________________
consensus             CAAGGTTTGACCCGGAAAAGGAGGAAGATAAAACTGCAGCAGGAGGAGGGACAAAGACAA
 
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rJMSF011P21+          AGACGAAAACCAATAAAGGGTAAAACAACCAAAGGTCTGGATTTGAATTTTGCGACCCAG
rJMSF042D09+          AGACGAAAACCAATAAAGGGTAAAACAACCAAAGGTCTGGATTTGAATTTTGCGACCCAG
rJMSF030M17+          AGACGAAAACCAATAAAGGGTAAAACAACCAAAGGTCTGGATTTGAATTTTGCGACCCAG
rJMFF050E05+          AGACGAAAACCAATAAAGGGTAAAACAACCAAAGGTCTGGATTTGAATTTTGCGACCCAG
                      ____________________________________________________________
consensus             AGACGAAAACCAATAAAGGGTAAAACAACCAAAGGTCTGGATTTGAATTTTGCGACCCAG
 
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rJMSF011P21+          ATTTCATTTTTTTGTGTATCTTTAAAATATCATTAGGGTATTGTTTTTCTACAAGGGGAA
rJMSF042D09+          ATTTCATTTTTTTGTGTATCTTTAAAATATCATTAGGGTATTGTTTTTCTACAAGGGGAA
rJMSF030M17+          ATTTCATTTTTTTGTGTATCTTTAAAATATCATTAGGGTATTGTTTTTCTACAAGGGGAA
rJMFF050E05+          ATTTCATTTTTTTGTGTATCTTTAAAATATCATTAGGGTATTGTTTTTCTACAAGGGGAA
                      ____________________________________________________________
consensus             ATTTCATTTTTTTGTGTATCTTTAAAATATCATTAGGGTATTGTTTTTCTACAAGGGGAA
 
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rJMSF011P21+          AGTTGTTGTATGGCCATTGGCATTCATTCTGGACAAGGAGAGGTATGCCCCACTTTATTA
rJMSF042D09+          AGTTGTTGTATGGCCATTGGCATTCATTCTGGACAAGGAGAGGTATGCCCCACTTTATTA
rJMSF030M17+          AGTTGTTGTATGGCCATTGGCATTCATTCTGGACAAGGAGAGGTATGCCCCACTTTATTA
rJMFF050E05+          AGTTGTTGTATGGCCATTGGCATTCATTCTGGACAAGGAGAGGTATGCCCCACTTTATTA
                      ____________________________________________________________
consensus             AGTTGTTGTATGGCCATTGGCATTCATTCTGGACAAGGAGAGGTATGCCCCACTTTATTA
 
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rJMSF011P21+          GTGCCTGGGGATCCCCCATCTCTCTTCCCCTATC                          
rJMSF042D09+          GTGCCTGGGGATCCCCCATCTCTCTTCCCCTATCAAGTGTGGTAAGAATTGGAATTTTGT
rJMSF030M17+          GTGCCTGGGGATCCCCCATCTCTCTTCCCCTATCAAGTGTGGTAAGAATTGGAATTTTGT
rJMFF050E05+          GTGCCTGGGGATCCCCCATCTCTCTTCCCCTATCAAGTGTGGTAAGAATTGGAATTTTGT
                      ____________________________________________________________
consensus             GTGCCTGGGGATCCCCCATCTCTCTTCCCCTATCAAGTGTGGTAAGAATTGGAATTTTGT
 
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rJMSF042D09+          AGCATCCAAA                                                  
rJMSF030M17+          AGCATCCAAAGTGCCATCTTTTTATGATCCTATGTTGTTCTTGTTCCAGATTCTTTTATC
rJMFF050E05+          AGCATCCAAAGTGCCATCTTTTTATGATCCTATGTTGTTCTTGTTCCAGATTCTTTTATC
                      ____________________________________________________________
consensus             AGCATCCAAAGTGCCATCTTTTTATGATCCTATGTTGTTCTTGTTCCAGATTCTTTTATC
 
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rJMSF030M17+          AGTTGATAAACTTGTGTGATTCATTAAAA                               
rJMFF050E05+          AGTTGATAAACTTGTGTGATTCATTAAAAATTTGTTCCATTAATGATATTCTGTGGCCAA
                      ____________________________________________________________
consensus             AGTTGATAAACTTGTGTGATTCATTAAAAATTTGTTCCATTAATGATATTCTGTGGCCAA
 
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rJMFF050E05+          GCAGGCCCCTTTTGCTTCAAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             GCAGGCCCCTTTTGCTTCAAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG