Contig 006992:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF025F01+                                                       CTATTTTTCAATCTT
                      ____________________________________________________________
consensus                                                          CTATTTTTCAATCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF025F01+          AGACCAGCAAAAGGAATTCAGGCGTTAGCAGACATGATGAAGAAGGAGAAGGGAGAAAGC
                      ____________________________________________________________
consensus             AGACCAGCAAAAGGAATTCAGGCGTTAGCAGACATGATGAAGAAGGAGAAGGGAGAAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF025F01+          AATTCGATGTCGAAGTGGGGTTGGGGAAACCGTTTTGGTTATGCAATCCTACCCTTAAAA
                      ____________________________________________________________
consensus             AATTCGATGTCGAAGTGGGGTTGGGGAAACCGTTTTGGTTATGCAATCCTACCCTTAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF025F01+          ATTGGAATGCTGAATGATCCCTTGGATTATGTGAGAGAAGCCAAGGCAACCGCTGACCGC
rJMFF049D02+                ATGCTGAATGATCCCTTGGATTATGTGAGAGAAGCCAAGGCAACCGCTGACCGC
                      ____________________________________________________________
consensus             ATTGGAATGCTGAATGATCCCTTGGATTATGTGAGAGAAGCCAAGGCAACCGCTGACCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF025F01+          AAGAAATACTCATATGAACCTATTTTCACTTATTACCTTGCCAATTTCGTCATTAAATTT
rJMFF049D02+          AAGAAATACTCATATGAACCTATTTTCACTTATTACCTTGCCAATTTCGTCATTAAATTT
                      ____________________________________________________________
consensus             AAGAAATACTCATATGAACCTATTTTCACTTATTACCTTGCCAATTTCGTCATTAAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF025F01+          TTTGGCCCCAAGGCAGCCGCCATTTTGACGAACAAAATATTCAGCAACGCAAGCACGTGC
rJMFF049D02+          TTTGGCCCCAAGGCAGCCGCCATTTTGACGAACAAAATATTCAGCAACGCAAGCACGTGC
                      ____________________________________________________________
consensus             TTTGGCCCCAAGGCAGCCGCCATTTTGACGAACAAAATATTCAGCAACGCAAGCACGTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF025F01+          TTCTCCAACGTTGTTGGACCTCGAGAAGATCTTGAGTTCTTTGGTCACCCCATTGCCTTT
rJMFF049D02+          TTCTCCAACGTTGTTGGACCTCGAGAAGATCTTGAGTTCTTTGGTCACCCCATTGCCTTT
                      ____________________________________________________________
consensus             TTCTCCAACGTTGTTGGACCTCGAGAAGATCTTGAGTTCTTTGGTCACCCCATTGCCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF025F01+          ATAGCTCCTACTTGTTATGGCCAGCCAAGTGCTCTGATGGTTCACTTTCAAAGTTATGTG
rJMFF049D02+          ATAGCTCCTACTTGTTATGGCCAGCCAAGTGCTCTGATGGTTCACTTTCAAAGTTATGTG
                      ____________________________________________________________
consensus             ATAGCTCCTACTTGTTATGGCCAGCCAAGTGCTCTGATGGTTCACTTTCAAAGTTATGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF025F01+          GACAAGATGGGTGTTATTATATCCGTTGATGAGAATGTGATTCCTGATCCCAACCAGTTG
rJMFF049D02+          GACAAGATGGGTGTTATTATATCCGTTGATGAGAATGTGATTCCTGATCCCAACCAGTTG
                      ____________________________________________________________
consensus             GACAAGATGGGTGTTATTATATCCGTTGATGAGAATGTGATTCCTGATCCCAACCAGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF025F01+          CTGGATGATTTTGAGAAATCCCTTCATCTCATTAAGGATGCTGCTGCAGCTGCCGCCACA
rJMFF049D02+          CTGGATGATTTTGAGAAATCCCTTCATCTCATTAAGGATGCTGCTGCAGCTGCCGCCACA
                      ____________________________________________________________
consensus             CTGGATGATTTTGAGAAATCCCTTCATCTCATTAAGGATGCTGCTGCAGCTGCCGCCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF025F01+          TCATCACCAACCAATTTATAATTAAGCCGCGCGCTAAGCTATATGTTGTATTGAAGATCA
rJMFF047G17+                                             AAGCTATATGTTGTATTGAAGATCA
rJMFF049D02+          TCATCACCAACCAATTTATAATTAAGCCGCGCGCTAAGCTATATGTTGTATTGAAGATCA
                      ____________________________________________________________
consensus             TCATCACCAACCAATTTATAATTAAGCCGCGCGCTAAGCTATATGTTGTATTGAAGATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF025F01+          GATCAGATCAGATGTCAAGTAATAATTAAATTAATAAGCTGCATGATGAAATGCATCAAC
rJMFF047G17+          GATCAGATCAGATGTCAAGTAATAATTAAATTAATAAGCTGCATGATGAAATGCATCAAC
rJMFF049D02+          GATCAGATCAGATGTCAAGTAATAATTAAATTAATAAGCTGCATGATGAAATGCATCAAC
                      ____________________________________________________________
consensus             GATCAGATCAGATGTCAAGTAATAATTAAATTAATAAGCTGCATGATGAAATGCATCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF025F01+          GTACCTAGCTACTGTATGTATAATATGCTGTATGTGTGATTGTGTGCTAGCTTAAGTTTA
rJMFF047G17+          GTCCCTAGCTACTGTATGTATAATATGCTGTATGTGGGATTGTGTGCTAGCTTAAGTTTA
rJMFF049D02+          GTACCTAGCTACTGTATGTATAATATGCTGTATGTGTGATTGTGTGCTAGCTTAAGTTTA
                      ____________________________________________________________
consensus             GTACCTAGCTACTGTATGTATAATATGCTGTATGTGTGATTGTGTGCTAGCTTAAGTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF025F01+          ATTT                                                        
rJMFF047G17+          ATTTTGTAATAA                                                
rJMFF049D02+          ATTTTGTAATAAAAAAAAAGAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             ATTTTGTAATAAAAAAAAAGAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG