clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF035A13 | Sequence | 617 | 008826 (3) | ref|XP_009758520.1| | 2e-16 | PREDICTED: probable methyltransferase PMT23 [Nicotiana sylvestris] | 726 | 006986 (3) | ref|XP_009613322.1| | 5e-89 | PREDICTED: probable methyltransferase PMT23 [Nicotiana tomentosiformis] |
JMFF048H02 | Sequence | 410 | 008826 (3) | ref|XP_009758520.1| | 5e-21 | PREDICTED: probable methyltransferase PMT23 [Nicotiana sylvestris] | 388 | 006986 (3) | gb|KJB67515.1| | 6e-21 | hypothetical protein B456_010G195400 [Gossypium raimondii] |
JMSF050A10 | Sequence | 677 | 008826 (3) | ref|XP_009758520.1| | 3e-49 | PREDICTED: probable methyltransferase PMT23 [Nicotiana sylvestris] | 758 | 006986 (3) | ref|XP_009631455.1| | 2e-89 | PREDICTED: probable methyltransferase PMT23 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF050A10+ ACGAGTGGC
____________________________________________________________
consensus ACGAGTGGC
. : . : . : . : . : . :
rJMSF050A10+ CTGAACCCTGGCCCGAGAGGCTTAGCAGCAGACCTCCAAGCCTCTCGTTAGTAGGTAATG
rJMFF035A13+ GTTAGTAGGTAATG
____________________________________________________________
consensus CTGAACCCTGGCCCGAGAGGCTTAGCAGCAGACCTCCAAGCCTCTCGTTAGTAGGTAATG
. : . : . : . : . : . :
rJMSF050A10+ GTGACGATGAAGAAGCTTTCAATCGGGATACCAAACACTGGGCTTCACTTCTCTCTGACG
rJMFF035A13+ GTGACGATGAAGAAGCTTTCAATCGGGATACCAAACACTGGGCTTCACTTCTCTCTGACG
____________________________________________________________
consensus GTGACGATGAAGAAGCTTTCAATCGGGATACCAAACACTGGGCTTCACTTCTCTCTGACG
. : . : . : . : . : . :
rJMSF050A10+ TTTACCTAGGAGGCCTTGAAATAAATTGGTCGGGCATTAGGAATGTGATGGATATGAATG
rJMFF035A13+ TTTACCTAGGAGGCCTTGAAATAAATTGGTCGGGCATTAGGAATGTGATGGATATGAATG
____________________________________________________________
consensus TTTACCTAGGAGGCCTTGAAATAAATTGGTCGGGCATTAGGAATGTGATGGATATGAATG
. : . : . : . : . : . :
rJMSF050A10+ CTGGCTATGGAGGGTTTGCTGCAGCATTAATCGACCAGCCTGTATGGGTAATGAACGTGA
rJMFF035A13+ CTGGCTATGGAGGGTTTGCTGCAGCATTAATCGACCAGCCTGTATGGGTAATGAACGTGA
____________________________________________________________
consensus CTGGCTATGGAGGGTTTGCTGCAGCATTAATCGACCAGCCTGTATGGGTAATGAACGTGA
. : . : . : . : . : . :
rJMSF050A10+ TTCCCATCAGCGAGCCAGATACTTTACCTGTTATATTCGATCGAGGATTGATTGGAGTAT
rJMFF035A13+ TTCCCATCAGCGAGCCAGATACTTTACCTGTTATATTCGATCGAGGATTGATTGGAGTAT
____________________________________________________________
consensus TTCCCATCAGCGAGCCAGATACTTTACCTGTTATATTCGATCGAGGATTGATTGGAGTAT
. : . : . : . : . : . :
rJMSF050A10+ ATCACGACTGGTGTGAGTCCTTCAATACCTATCCCCGCACATATGATCTTCTACAGGCCA
rJMFF035A13+ ATCACGACTGGTGTGAGTCCTTCAATACCTATCCCCGCACATATGATCTTNTACAGGCCA
____________________________________________________________
consensus ATCACGACTGGTGTGAGTCCTTCAATACCTATCCCCGCACATATGATCTTCTACAGGCCA
. : . : . : . : . : . :
rJMSF050A10+ GTTTACTCTTCGAAAAGTTAGCTCAAAGATGCGACATAATAGACATGGCGGTGGAGGTGG
rJMFF035A13+ GTTTACTCTTCGAAAAGTTAGCTCAAAGATGCGACATAATAGACATGGCGGTGGAGGTGG
rJMFF048H02+ GACATAATAGACATGGCGGTGGAGGTGG
____________________________________________________________
consensus GTTTACTCTTCGAAAAGTTAGCTCAAAGATGCGACATAATAGACATGGCGGTGGAGGTGG
. : . : . : . : . : . :
rJMSF050A10+ ACAGAATCTTGAGACCGGGTGGCGTTCTTTTAGTTCACGACACCATGGATATGCTTAACA
rJMFF035A13+ ACAGAATCTTGAGACCGGGTGGCGTTCTTTTAGTTCACGACACCATGGATATGCTTAACA
rJMFF048H02+ ACAGAATCTTGAGACCGGGTGGCGTTCTTTTAGTTCACGACACCAGGGATATGCTTAACA
____________________________________________________________
consensus ACAGAATCTTGAGACCGGGTGGCGTTCTTTTAGTTCACGACACCATGGATATGCTTAACA
. : . : . : . : . : . :
rJMSF050A10+ AGCTCACTCCAATTCTGCGCTCACTTCATTGGTCAGTAACCGTAAAGCAACAACAGTTTC
rJMFF035A13+ AGCTCACTCCAATTCTGCGCTCACTTCATTGGTCAGTAACCGTAAAGCAACAACAGTTTC
rJMFF048H02+ AGCTCACTCCAATTCTGCGCTCACTTCATTGGTCAGTAACCGTAAAGCAACAACAGTTTC
____________________________________________________________
consensus AGCTCACTCCAATTCTGCGCTCACTTCATTGGTCAGTAACCGTAAAGCAACAACAGTTTC
. : . : . : . : . : . :
rJMSF050A10+ TCGTTGGCAAGAAAGGCTTTTGGCGCCCGGATGAAAAGACCAAATTATGAACACACCCTC
rJMFF035A13+ TCGTTGGCAAGAAAGGCTTTTGGCGCCCGGATGAAAAGACCAAATTATGAACACACCCTC
rJMFF048H02+ TCGTTGGCAAGAAAGGCTTTTGGCGCCCGGATGAAAAGACCAAATTATGAACACACCCTC
____________________________________________________________
consensus TCGTTGGCAAGAAAGGCTTTTGGCGCCCGGATGAAAAGACCAAATTATGAACACACCCTC
. : . : . : . : . : . :
rJMSF050A10+ GTGGTGTATATATATATATATCTCCCTACTACATGCAGCAATATAGCTTTTGTTTCAACG
rJMFF035A13+ GTGGTGTATATATATATATATCTCCCTACTACATGCAGCAATATAGCTTTTGTTTCAACG
rJMFF048H02+ GTGGTGTATATATATATATATCTCCCTACTACATGCAGCAATATAGCTTTTGTTTCAACG
____________________________________________________________
consensus GTGGTGTATATATATATATATCTCCCTACTACATGCAGCAATATAGCTTTTGTTTCAACG
. : . : . : . : . : . :
rJMSF050A10+ AGATATCAAGATTTTTTTTTCCTCTAAATGTATTTCTAAGAGTTGAACTTTTTGCCCTAT
rJMFF035A13+ AGATATCAAGATTTTTTTTTCCTCTAAATGTATTTCTAAGAGTTGAACTTTTTGCCCTAT
rJMFF048H02+ AGATATCAAGATTTTTTTTTCCTCTAAATGTATTTCTAAGAGTTGAACTTTTTGCCCTAT
____________________________________________________________
consensus AGATATCAAGATTTTTTTTTCCTCTAAATGTATTTCTAAGAGTTGAACTTTTTGCCCTAT
. : . : . : . : . : . :
rJMSF050A10+ ATATGAACCCCAGGGGAACAAATTTCGGA
rJMFF035A13+ ATATGAACCCCAGGGGAACAAATTTCGGA-TGAGAAGCAAGAGAGGAACAAAT
rJMFF048H02+ ATATGAACCCCAGGGGAACAAATTTCGGATTGAGAAGCAAGAGAGGAACAAATTAAATGT
____________________________________________________________
consensus ATATGAACCCCAGGGGAACAAATTTCGGATTGAGAAGCAAGAGAGGAACAAATTAAATGT