Contig 006982:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004E21Sequence489012814 (11)ref|XP_009613485.1|5e-28PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo745006982 (11)dbj|BAF01799.1|1e-79H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop
JMFF020A23Sequence585006982 (11)emb|CAJ38391.1|8e-27mitochondrial ATP synthase, beta chain [Plantago major]
JMFF028C23Sequence600012814 (11)ref|XP_009613485.1|5e-64PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo657006982 (11)dbj|BAF01799.1|1e-61H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop
JMFF034C13Sequence594012814 (11)ref|XP_009613485.1|2e-70PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo697006982 (11)dbj|BAF01799.1|3e-71H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop
JMFF047M06Sequence430012814 (11)ref|NP_001289494.1|4e-14ATP synthase subunit beta, mitochondrial-like [Nicotiana sylvestris] gb|AAD03392245006982 (11)
JMFN017F02Sequence505006982 (11)ref|XP_004238867.1|9e-14PREDICTED: ATP synthase subunit beta, mitochondrial-like [Solanum lycopersicum]
JMFN046K15Sequence475006982 (11)dbj|BAF01799.1|6e-18H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop
JMSF008I20Sequence296012814 (11)ref|XP_006344203.1|6e-04PREDICTED: ATP synthase subunit beta, mitochondrial-like [Solanum tuberosum]725006982 (11)dbj|BAF01799.1|9e-81H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop
JMSF020M20Sequence688012814 (11)ref|XP_009613485.1|8e-86PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo775006982 (11)dbj|BAF01799.1|1e-93H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop
JMSF031N15Sequence639012814 (11)ref|XP_009613485.1|7e-75PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo678006982 (11)emb|CAJ38391.1|2e-68mitochondrial ATP synthase, beta chain [Plantago major]
JMSF043D01Sequence581012814 (11)ref|XP_009613485.1|1e-71PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo740006982 (11)emb|CAJ38391.1|6e-74mitochondrial ATP synthase, beta chain [Plantago major]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF020M20+ AACNACCTTTGCTCACTTGGATGCCACAACTGTGTTGTCCCGTCAGATTT
                      ____________________________________________________________
consensus AACNACCTTTGCTCACTTGGATGCCACAACTGTGTTGTCCCGTCAGATTT
 
. : . : . : . : . : . :
rJMSF020M20+ CTGAGCTTGGTATATATCCTGCTGTCGATCCACTTGATTCAACATCTAGAATGCTCTCCC
rJMSF031N15+ CTAGAATGCTCTCCC
rJMSF008I20+ GAGCTTGGTATATATCCTGCTGTCGATCCACTTGATTCAACATCTAGAATGCTCTCCC
rJMFF034C13+ TTGATTCAACATNTAGAATGCTCTCCC
rJMFF004E21+ GAGCTTGGTATATATCCTGCTGTCGATCCACTTGATTCAACATNTAGAATGCTCTCCC
rJMSF043D01+ GTATATATCCTGCTGTCGATNCACTTGATTCAACATTTAGAATGCTCTCCC
                      ____________________________________________________________
consensus CTGAGCTTGGTATATATCCTGCTGTCGATCCACTTGATTCAACATCTAGAATGCTCTCCC
 
. : . : . : . : . : . :
rJMSF020M20+ CTCACATTTTGGGGGAGGATCACTACAACACTGCTCGTGGAGTACAGAAAGTTTTGCAGA
rJMSF031N15+ CTCACATTTTGGGGGAGGATCACTACAACACTGCTCGTGGAGTACAGAAAGTTTTGCAGA
rJMSF008I20+ CTCACATTTTGGGGGAGGATCACTACAACACTGCTCGTGGAGTACAGAAAGTTTTGCAGA
rJMFF034C13+ CTCACATTTTGGGGGAGGATCACTACAACACTGCTCGTGGAGTACAGAAAGTTTTGCAGA
rJMFF028C23+ GGAGGATCACTACAACACTGCTCGTGGAGTACAGAAAGTTTTGCAGA
rJMFF004E21+ NTCACATTTTGGGGGAGGATCACTACAACACTGCTCGTGGAGTACAGAAAGTTTTGCAGA
rJMSF043D01+ CTCACATTTTGGGGGAGGATCANTACAACACTGCTCGTGGAGTACAGAAAGTTTTGCAGA
                      ____________________________________________________________
consensus CTCACATTTTGGGGGAGGATCACTACAACACTGCTCGTGGAGTACAGAAAGTTTTGCAGA
 
. : . : . : . : . : . :
rJMSF020M20+ ACTACAAGAATCTCCAAGATATTATTGCCATTTTGGGTATGGATGAGCTCAGTGAAGATG
rJMSF031N15+ ACTACAAGAATCTCCAAGATATTATTGCCATTTTGGGTATGGATGAGCTCAGTGAAGATG
rJMSF008I20+ ACTACAAGAATCTCCAAGATATTATTGCCATTTTGGGTATGGATGAGCTCAGTGAAGATG
rJMFF034C13+ ACTACAAGAATCTCCAAGATATTATTGCCATTTTGGGTATGGATGAGCTCAGTGAAGATG
rJMFF028C23+ ACTACAAGAATCTCCAAGATATTATTGCCATTTTGGGTATGGATGAGCTCAGTGAAGATG
rJMFF004E21+ ACTACAAGAATCTCCAAGATATTATTGCCATTTTGGGTATGGATGAGCTCAGTGAAGATG
rJMFF020A23+ GTATGGATGAGCTCAGTGAAGATG
rJMSF043D01+ ACTACAAGAATCTCCAAGATATTATTGCCATTTTGGGTATGGATGAGCTCAGTGAAGATG
                      ____________________________________________________________
consensus ACTACAAGAATCTCCAAGATATTATTGCCATTTTGGGTATGGATGAGCTCAGTGAAGATG
 
. : . : . : . : . : . :
rJMSF020M20+ ACAAGTTGA-CTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
rJMSF031N15+ ACAAGTTGA-CTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
rJMSF008I20+ ACAAGTTGA-CTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
rJMFF034C13+ ACAAGTTGA-CTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
rJMFF028C23+ ACAAGTTGA-CTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
rJMFF004E21+ ACAAGTTGA-CTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
rJMFF020A23+ ACAAGTTGATCTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
rJMSF043D01+ ACAAGTTGA-CTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
                      ____________________________________________________________
consensus ACAAGTTGA-CTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
 
. : . : . : . : . : . :
rJMSF020M20+ GTTGCTGAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
rJMSF031N15+ GTTGCTGAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
rJMSF008I20+ GTTGCTGAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
rJMFF034C13+ GTTGCTGAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
JMFN046K15- GAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
rJMFF028C23+ GTTGCTGAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
rJMFF004E21+ GTTGCTGAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
rJMFF020A23+ GTNGCTGAAGTTNTCACGGGTGCCCCTGGAAAGTATGTTGATTNGAAGGAGAGTATTAAC
rJMSF043D01+ GTTGCTGAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
JMFN017F02- CCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
                      ____________________________________________________________
consensus GTTGCTGAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
 
. : . : . : . : . : . :
rJMSF020M20+ AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
rJMSF031N15+ AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
rJMSF008I20+ AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
rJMFF034C13+ AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
JMFN046K15- AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
rJMFF028C23+ AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
rJMFF004E21+ AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
rJMFF020A23+ AGCTTCCAGGGTGTCTTGGATGNCAAGTATGATGATCTTTTTGAGCAGTCATTTTACATG
rJMSF043D01+ AGCTTCCAGGGTGTNTTGGATGGCAAGTATGATGATCTTTTTGAGCAGTCATTTTACATG
JMFN017F02- AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
                      ____________________________________________________________
consensus AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
 
. : . : . : . : . : . :
rJMSF020M20+ GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
rJMSF031N15+ GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
rJMSF008I20+ GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
rJMFF034C13+ GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
JMFN046K15- GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
rJMFF028C23+ GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
rJMFF004E21+ GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
rJMFF020A23+ GNTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGNTGCA
rJMSF043D01+ GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATTTGCTGCA
JMFN017F02- GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
                      ____________________________________________________________
consensus GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
 
. : . : . : . : . : . :
rJMSF020M20+ TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
rJMSF031N15+ TAGAG-ATACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
rJMSF008I20+ TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
rJMFF034C13+ TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
JMFN046K15- TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
rJMFF028C23+ TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
rJMFF004E21+ TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
rJMFF020A23+ TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
rJMSF043D01+ TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
JMFN017F02- TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
                      ____________________________________________________________
consensus TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
 
. : . : . : . : . : . :
rJMSF020M20+ ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
rJMSF031N15+ ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
rJMSF008I20+ ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
rJMFF034C13+ ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
JMFN046K15- ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
rJMFF028C23+ ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
rJMFF004E21+ ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
rJMFF020A23+ ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTNTCCTCCGTTCATGGGGGTCT
rJMSF043D01+ ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTNTCCTCCGTTCATGGGGGTTT
JMFN017F02- ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
                      ____________________________________________________________
consensus ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
 
. : . : . : . : . : . :
rJMSF020M20+ GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
rJMSF031N15+ GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
rJMSF008I20+ GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
rJMFF034C13+ GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
JMFN046K15- GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
rJMFF028C23+ GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
rJMFF004E21+ GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
rJMFF020A23+ GAGTGGTCCAAAATTTTCTGTTTTTGNTTAANGTGTATTGCGGGATTGAGAAATAGAGAA
rJMSF043D01+ GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
JMFN017F02- GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
rJMFF047M06+ AGAGAA
                      ____________________________________________________________
consensus GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
 
. : . : . : . : . : . :
rJMSF020M20+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
rJMSF031N15+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
rJMSF008I20+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
rJMFF034C13+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
JMFN046K15- ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
rJMFF028C23+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
rJMFF004E21+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
rJMFF020A23+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
rJMSF043D01+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
JMFN017F02- ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
rJMFF047M06+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
                      ____________________________________________________________
consensus ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
 
. : . : . : . : . : . :
rJMSF020M20+ CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
rJMSF031N15+ CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
rJMSF008I20+ CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
rJMFF034C13+ CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
JMFN046K15- CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
rJMFF028C23+ CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
rJMFF004E21+ CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
rJMFF020A23+ CTTCCACCCCTGGGTTGTANGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
rJMSF043D01+ CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCNGGCATATTCT
JMFN017F02- CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
rJMFF047M06+ CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
                      ____________________________________________________________
consensus CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
 
. : . : . : . : . : . :
rJMSF020M20+ GTACATT
rJMSF031N15+ GTACAT
rJMSF008I20+ GTACATTAG
rJMFF034C13+ GTACATTAGTTA
JMFN046K15- GT
rJMFF028C23+ GTACATTAGTTA
rJMFF004E21+ GTACATTAGTTATGAT
rJMFF020A23+ GTACATTAGTTATGATTCTTAT
rJMSF043D01+ GTACNTTAGTTATGATTCTTATTTTAAAAT
JMFN017F02- GTACATTAGTTATGATTCTTATTTTAAAATTGTTGCATTGCCAAATT
rJMFF047M06+ GTACATTAGTTATGATTTTTATTTTAAAATTGTTGCATTGCCAAATTTTGXXXXXXXXXX
                      ____________________________________________________________
consensus GTACATTAGTTATGATTCTTATTTTAAAATTGTTGCATTGCCAAATTTTGNNNNNNNNNN
 
. : . : . : . : . : . :
rJMFF047M06+ XXXXXXXXXXXXXXXCCAAAAAAAAAAAAAAAACTCGCCAGGGTGATCCGCCATAAGGGC
                      ____________________________________________________________
consensus NNNNNNNNNNNNNNNCCAAAAAAAAAAAAAAAACTCGCCAGGGTGATCCGCCATAAGGGC