| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004E21 | Sequence | 489 | 012814 (11) | ref|XP_009613485.1| | 5e-28 | PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo | 745 | 006982 (11) | dbj|BAF01799.1| | 1e-79 | H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop |
| JMFF020A23 | Sequence | 585 | 006982 (11) | emb|CAJ38391.1| | 8e-27 | mitochondrial ATP synthase, beta chain [Plantago major] | |||||
| JMFF028C23 | Sequence | 600 | 012814 (11) | ref|XP_009613485.1| | 5e-64 | PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo | 657 | 006982 (11) | dbj|BAF01799.1| | 1e-61 | H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop |
| JMFF034C13 | Sequence | 594 | 012814 (11) | ref|XP_009613485.1| | 2e-70 | PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo | 697 | 006982 (11) | dbj|BAF01799.1| | 3e-71 | H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop |
| JMFF047M06 | Sequence | 430 | 012814 (11) | ref|NP_001289494.1| | 4e-14 | ATP synthase subunit beta, mitochondrial-like [Nicotiana sylvestris] gb|AAD03392 | 245 | 006982 (11) | |||
| JMFN017F02 | Sequence | 505 | 006982 (11) | ref|XP_004238867.1| | 9e-14 | PREDICTED: ATP synthase subunit beta, mitochondrial-like [Solanum lycopersicum] | |||||
| JMFN046K15 | Sequence | 475 | 006982 (11) | dbj|BAF01799.1| | 6e-18 | H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop | |||||
| JMSF008I20 | Sequence | 296 | 012814 (11) | ref|XP_006344203.1| | 6e-04 | PREDICTED: ATP synthase subunit beta, mitochondrial-like [Solanum tuberosum] | 725 | 006982 (11) | dbj|BAF01799.1| | 9e-81 | H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop |
| JMSF020M20 | Sequence | 688 | 012814 (11) | ref|XP_009613485.1| | 8e-86 | PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo | 775 | 006982 (11) | dbj|BAF01799.1| | 1e-93 | H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop |
| JMSF031N15 | Sequence | 639 | 012814 (11) | ref|XP_009613485.1| | 7e-75 | PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo | 678 | 006982 (11) | emb|CAJ38391.1| | 2e-68 | mitochondrial ATP synthase, beta chain [Plantago major] |
| JMSF043D01 | Sequence | 581 | 012814 (11) | ref|XP_009613485.1| | 1e-71 | PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo | 740 | 006982 (11) | emb|CAJ38391.1| | 6e-74 | mitochondrial ATP synthase, beta chain [Plantago major] |
This contig is upended
. : . : . : . : . : . :
rJMSF020M20+ AACNACCTTTGCTCACTTGGATGCCACAACTGTGTTGTCCCGTCAGATTT
____________________________________________________________
consensus AACNACCTTTGCTCACTTGGATGCCACAACTGTGTTGTCCCGTCAGATTT
. : . : . : . : . : . :
rJMSF020M20+ CTGAGCTTGGTATATATCCTGCTGTCGATCCACTTGATTCAACATCTAGAATGCTCTCCC
rJMSF031N15+ CTAGAATGCTCTCCC
rJMSF008I20+ GAGCTTGGTATATATCCTGCTGTCGATCCACTTGATTCAACATCTAGAATGCTCTCCC
rJMFF034C13+ TTGATTCAACATNTAGAATGCTCTCCC
rJMFF004E21+ GAGCTTGGTATATATCCTGCTGTCGATCCACTTGATTCAACATNTAGAATGCTCTCCC
rJMSF043D01+ GTATATATCCTGCTGTCGATNCACTTGATTCAACATTTAGAATGCTCTCCC
____________________________________________________________
consensus CTGAGCTTGGTATATATCCTGCTGTCGATCCACTTGATTCAACATCTAGAATGCTCTCCC
. : . : . : . : . : . :
rJMSF020M20+ CTCACATTTTGGGGGAGGATCACTACAACACTGCTCGTGGAGTACAGAAAGTTTTGCAGA
rJMSF031N15+ CTCACATTTTGGGGGAGGATCACTACAACACTGCTCGTGGAGTACAGAAAGTTTTGCAGA
rJMSF008I20+ CTCACATTTTGGGGGAGGATCACTACAACACTGCTCGTGGAGTACAGAAAGTTTTGCAGA
rJMFF034C13+ CTCACATTTTGGGGGAGGATCACTACAACACTGCTCGTGGAGTACAGAAAGTTTTGCAGA
rJMFF028C23+ GGAGGATCACTACAACACTGCTCGTGGAGTACAGAAAGTTTTGCAGA
rJMFF004E21+ NTCACATTTTGGGGGAGGATCACTACAACACTGCTCGTGGAGTACAGAAAGTTTTGCAGA
rJMSF043D01+ CTCACATTTTGGGGGAGGATCANTACAACACTGCTCGTGGAGTACAGAAAGTTTTGCAGA
____________________________________________________________
consensus CTCACATTTTGGGGGAGGATCACTACAACACTGCTCGTGGAGTACAGAAAGTTTTGCAGA
. : . : . : . : . : . :
rJMSF020M20+ ACTACAAGAATCTCCAAGATATTATTGCCATTTTGGGTATGGATGAGCTCAGTGAAGATG
rJMSF031N15+ ACTACAAGAATCTCCAAGATATTATTGCCATTTTGGGTATGGATGAGCTCAGTGAAGATG
rJMSF008I20+ ACTACAAGAATCTCCAAGATATTATTGCCATTTTGGGTATGGATGAGCTCAGTGAAGATG
rJMFF034C13+ ACTACAAGAATCTCCAAGATATTATTGCCATTTTGGGTATGGATGAGCTCAGTGAAGATG
rJMFF028C23+ ACTACAAGAATCTCCAAGATATTATTGCCATTTTGGGTATGGATGAGCTCAGTGAAGATG
rJMFF004E21+ ACTACAAGAATCTCCAAGATATTATTGCCATTTTGGGTATGGATGAGCTCAGTGAAGATG
rJMFF020A23+ GTATGGATGAGCTCAGTGAAGATG
rJMSF043D01+ ACTACAAGAATCTCCAAGATATTATTGCCATTTTGGGTATGGATGAGCTCAGTGAAGATG
____________________________________________________________
consensus ACTACAAGAATCTCCAAGATATTATTGCCATTTTGGGTATGGATGAGCTCAGTGAAGATG
. : . : . : . : . : . :
rJMSF020M20+ ACAAGTTGA-CTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
rJMSF031N15+ ACAAGTTGA-CTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
rJMSF008I20+ ACAAGTTGA-CTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
rJMFF034C13+ ACAAGTTGA-CTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
rJMFF028C23+ ACAAGTTGA-CTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
rJMFF004E21+ ACAAGTTGA-CTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
rJMFF020A23+ ACAAGTTGATCTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
rJMSF043D01+ ACAAGTTGA-CTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
____________________________________________________________
consensus ACAAGTTGA-CTGTTGCCCGTGCACGTAAGATCCAAAGGTTCTTGAGCCAGCCTTTCCAT
. : . : . : . : . : . :
rJMSF020M20+ GTTGCTGAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
rJMSF031N15+ GTTGCTGAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
rJMSF008I20+ GTTGCTGAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
rJMFF034C13+ GTTGCTGAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
JMFN046K15- GAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
rJMFF028C23+ GTTGCTGAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
rJMFF004E21+ GTTGCTGAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
rJMFF020A23+ GTNGCTGAAGTTNTCACGGGTGCCCCTGGAAAGTATGTTGATTNGAAGGAGAGTATTAAC
rJMSF043D01+ GTTGCTGAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
JMFN017F02- CCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
____________________________________________________________
consensus GTTGCTGAAGTTTTCACGGGTGCCCCTGGAAAGTATGTTGATTTGAAGGAGAGTATTAAC
. : . : . : . : . : . :
rJMSF020M20+ AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
rJMSF031N15+ AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
rJMSF008I20+ AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
rJMFF034C13+ AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
JMFN046K15- AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
rJMFF028C23+ AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
rJMFF004E21+ AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
rJMFF020A23+ AGCTTCCAGGGTGTCTTGGATGNCAAGTATGATGATCTTTTTGAGCAGTCATTTTACATG
rJMSF043D01+ AGCTTCCAGGGTGTNTTGGATGGCAAGTATGATGATCTTTTTGAGCAGTCATTTTACATG
JMFN017F02- AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
____________________________________________________________
consensus AGCTTCCAGGGTGTCTTGGATGGCAAGTATGATGATCTTTCTGAGCAGTCATTTTACATG
. : . : . : . : . : . :
rJMSF020M20+ GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
rJMSF031N15+ GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
rJMSF008I20+ GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
rJMFF034C13+ GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
JMFN046K15- GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
rJMFF028C23+ GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
rJMFF004E21+ GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
rJMFF020A23+ GNTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGNTGCA
rJMSF043D01+ GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATTTGCTGCA
JMFN017F02- GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
____________________________________________________________
consensus GTTGGTGGAATCGATGAGGTCATTGCAAAGGCAGAGAAGATTGCCAAGGAATCTGCTGCA
. : . : . : . : . : . :
rJMSF020M20+ TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
rJMSF031N15+ TAGAG-ATACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
rJMSF008I20+ TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
rJMFF034C13+ TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
JMFN046K15- TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
rJMFF028C23+ TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
rJMFF004E21+ TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
rJMFF020A23+ TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
rJMSF043D01+ TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
JMFN017F02- TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
____________________________________________________________
consensus TAGAGAAGACAAAATCGCAAGTTTCCTTTTGTGCTTTCACCAATAACTGCAGAAATAAGT
. : . : . : . : . : . :
rJMSF020M20+ ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
rJMSF031N15+ ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
rJMSF008I20+ ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
rJMFF034C13+ ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
JMFN046K15- ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
rJMFF028C23+ ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
rJMFF004E21+ ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
rJMFF020A23+ ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTNTCCTCCGTTCATGGGGGTCT
rJMSF043D01+ ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTNTCCTCCGTTCATGGGGGTTT
JMFN017F02- ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
____________________________________________________________
consensus ACTTTTTCTGTGACAATGCCAAACACCGGAGATCCAACTCTCCTCCGTTCATGGGGGTCT
. : . : . : . : . : . :
rJMSF020M20+ GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
rJMSF031N15+ GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
rJMSF008I20+ GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
rJMFF034C13+ GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
JMFN046K15- GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
rJMFF028C23+ GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
rJMFF004E21+ GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
rJMFF020A23+ GAGTGGTCCAAAATTTTCTGTTTTTGNTTAANGTGTATTGCGGGATTGAGAAATAGAGAA
rJMSF043D01+ GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
JMFN017F02- GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
rJMFF047M06+ AGAGAA
____________________________________________________________
consensus GAGTGGTCCAAAATTTTCTGTTTTTGTTTAACGTGTATTGCGGGATTGAGAAATAGAGAA
. : . : . : . : . : . :
rJMSF020M20+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
rJMSF031N15+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
rJMSF008I20+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
rJMFF034C13+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
JMFN046K15- ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
rJMFF028C23+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
rJMFF004E21+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
rJMFF020A23+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
rJMSF043D01+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
JMFN017F02- ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
rJMFF047M06+ ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
____________________________________________________________
consensus ATGGAGGCCGGAGCCACAGGCGGTCGCCTTGATAATCCACCACCCTTCCCCCCTTACACC
. : . : . : . : . : . :
rJMSF020M20+ CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
rJMSF031N15+ CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
rJMSF008I20+ CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
rJMFF034C13+ CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
JMFN046K15- CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
rJMFF028C23+ CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
rJMFF004E21+ CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
rJMFF020A23+ CTTCCACCCCTGGGTTGTANGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
rJMSF043D01+ CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCNGGCATATTCT
JMFN017F02- CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
rJMFF047M06+ CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
____________________________________________________________
consensus CTTCCACCCCTGGGTTGTATGTTGTGATTTCACATAATAAGGGGTGAGCAGGCATA-TCT
. : . : . : . : . : . :
rJMSF020M20+ GTACATT
rJMSF031N15+ GTACAT
rJMSF008I20+ GTACATTAG
rJMFF034C13+ GTACATTAGTTA
JMFN046K15- GT
rJMFF028C23+ GTACATTAGTTA
rJMFF004E21+ GTACATTAGTTATGAT
rJMFF020A23+ GTACATTAGTTATGATTCTTAT
rJMSF043D01+ GTACNTTAGTTATGATTCTTATTTTAAAAT
JMFN017F02- GTACATTAGTTATGATTCTTATTTTAAAATTGTTGCATTGCCAAATT
rJMFF047M06+ GTACATTAGTTATGATTTTTATTTTAAAATTGTTGCATTGCCAAATTTTGXXXXXXXXXX
____________________________________________________________
consensus GTACATTAGTTATGATTCTTATTTTAAAATTGTTGCATTGCCAAATTTTGNNNNNNNNNN
. : . : . : . : . : . :
rJMFF047M06+ XXXXXXXXXXXXXXXCCAAAAAAAAAAAAAAAACTCGCCAGGGTGATCCGCCATAAGGGC
____________________________________________________________
consensus NNNNNNNNNNNNNNNCCAAAAAAAAAAAAAAAACTCGCCAGGGTGATCCGCCATAAGGGC